Wall clock time and date at job start Tue Mar 31 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47194 * 2 1 4 4 C 1.50702 * 109.47241 * 239.99500 * 2 1 3 5 5 C 1.38255 * 120.02906 * 300.00466 * 4 2 1 6 6 C 1.38101 * 119.92957 * 179.97438 * 5 4 2 7 7 C 1.38495 * 120.21869 * 0.02562 * 6 5 4 8 8 C 1.38215 * 119.85196 * 359.97438 * 7 6 5 9 9 C 1.38098 * 120.03211 * 119.97649 * 4 2 1 10 10 C 1.51363 * 109.76166 * 179.74808 * 8 7 6 11 11 C 1.54194 * 105.24998 * 343.15179 * 10 8 7 12 12 C 1.51376 * 130.39085 * 179.97438 * 7 6 5 13 13 S 1.81401 * 109.46940 * 119.99560 * 2 1 3 14 14 O 1.42107 * 109.46715 * 188.60880 * 13 2 1 15 15 C 1.81397 * 103.00287 * 304.99653 * 13 2 1 16 16 C 1.53004 * 109.47180 * 179.97438 * 15 13 2 17 17 C 1.50696 * 109.46708 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00475 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99669 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00076 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00055 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47575 * 89.99920 * 21 19 17 23 23 H 1.48507 * 109.47156 * 209.99989 * 21 19 17 24 24 H 1.48504 * 109.47081 * 329.99606 * 21 19 17 25 25 H 1.09005 * 109.47009 * 300.00161 * 1 2 3 26 26 H 1.08995 * 109.47232 * 60.00169 * 1 2 3 27 27 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.03261 * 359.94597 * 5 4 2 29 29 H 1.08003 * 119.89167 * 179.97438 * 6 5 4 30 30 H 1.08000 * 119.89170 * 0.04210 * 9 4 2 31 31 H 1.09001 * 110.30770 * 101.74036 * 10 8 7 32 32 H 1.09004 * 110.30552 * 223.89434 * 10 8 7 33 33 H 1.08994 * 110.62511 * 267.86794 * 11 10 8 34 34 H 1.09003 * 111.11840 * 144.44315 * 11 10 8 35 35 H 1.08994 * 110.29686 * 316.13729 * 12 7 6 36 36 H 1.08993 * 110.30259 * 78.29396 * 12 7 6 37 37 H 1.09001 * 109.47058 * 300.00463 * 15 13 2 38 38 H 1.09001 * 109.46555 * 60.00346 * 15 13 2 39 39 H 1.08998 * 109.46792 * 300.00311 * 16 15 13 40 40 H 1.08997 * 109.46385 * 60.00524 * 16 15 13 41 41 H 0.97001 * 120.00325 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6987 -2.0341 -1.4497 6 6 2.1598 -2.6831 -2.5782 7 6 2.9562 -2.0125 -3.4915 8 6 3.2898 -0.6893 -3.2722 9 6 2.8260 -0.0400 -2.1402 10 6 4.1657 -0.1885 -4.4006 11 6 4.6822 -1.4581 -5.1071 12 6 3.5800 -2.4898 -4.7855 13 16 2.1346 -0.8550 1.4812 14 8 3.5415 -0.6838 1.5858 15 6 1.3150 0.0376 2.8309 16 6 1.7280 -0.5735 4.1714 17 6 1.0465 0.1677 5.2926 18 1 0.3853 0.9925 5.0713 19 6 1.2679 -0.2064 6.6010 20 7 0.6736 0.4408 7.5796 21 14 2.4132 -1.6315 6.9839 22 1 3.7973 -1.1219 7.1563 23 1 1.9720 -2.2987 8.2352 24 1 2.3806 -2.6072 5.8648 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.0785 -2.5601 -0.7390 29 1 1.8991 -3.7172 -2.7487 30 1 3.0864 0.9940 -1.9680 31 1 3.5798 0.4125 -5.0961 32 1 4.9974 0.3938 -4.0040 33 1 5.6388 -1.7689 -4.6871 34 1 4.7653 -1.3027 -6.1828 35 1 4.0161 -3.4799 -4.6524 36 1 2.8347 -2.5076 -5.5806 37 1 1.6087 1.0870 2.8036 38 1 0.2340 -0.0403 2.7142 39 1 1.4338 -1.6227 4.1983 40 1 2.8089 -0.4960 4.2883 41 1 0.8290 0.1774 8.5001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417205643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:07 Heat of formation + Delta-G solvation = -57.274492 kcal Electronic energy + Delta-G solvation = -20426.129032 eV Core-core repulsion = 17395.523672 eV Total energy + Delta-G solvation = -3030.605360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07320 -37.45877 -36.85184 -35.75168 -34.01173 -33.25801 -32.09289 -29.30738 -28.21345 -27.46004 -24.59291 -23.54994 -22.84017 -21.68112 -20.93807 -19.22283 -18.21862 -17.16196 -17.07304 -16.53946 -16.31176 -16.06161 -15.84795 -15.72244 -15.40685 -14.71793 -14.40712 -14.16403 -14.09783 -13.82846 -13.71510 -13.57437 -13.28697 -13.10076 -12.81850 -12.57528 -12.38431 -12.34653 -12.14109 -12.05120 -11.96263 -11.80256 -11.70915 -11.59292 -11.53456 -10.81647 -10.80172 -9.73018 -9.39042 -9.07137 -8.33376 -6.38381 0.16237 0.44793 0.75993 1.34023 1.35857 1.47234 1.70361 2.33000 2.72329 2.89096 3.01483 3.37995 3.66169 3.75000 3.94419 4.11495 4.16005 4.17582 4.25244 4.34355 4.34972 4.43907 4.58166 4.73453 4.77269 4.79850 4.85507 4.93917 4.96231 5.00782 5.07576 5.21933 5.24846 5.28028 5.29159 5.32419 5.39068 5.51301 5.55859 5.63008 5.71165 6.10327 6.22609 6.68136 7.26072 8.82830 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.034004 B = 0.003190 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.226610 B = 8775.907614 C = 8999.961166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.362 4.362 3 H 0.076 0.924 4 C -0.069 4.069 5 C -0.126 4.126 6 C -0.105 4.105 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.130 4.130 10 C -0.086 4.086 11 C -0.118 4.118 12 C -0.079 4.079 13 S 1.276 4.724 14 O -0.914 6.914 15 C -0.416 4.416 16 C 0.000 4.000 17 C -0.529 4.529 18 H 0.038 0.962 19 C 0.007 3.993 20 N -0.947 5.947 21 Si 0.936 3.064 22 H -0.281 1.281 23 H -0.273 1.273 24 H -0.233 1.233 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.165 0.835 29 H 0.154 0.846 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.143 0.857 39 H 0.054 0.946 40 H -0.003 1.003 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 -9.908 -28.637 30.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.480 4.480 3 H 0.095 0.905 4 C -0.070 4.070 5 C -0.144 4.144 6 C -0.122 4.122 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.149 4.149 10 C -0.123 4.123 11 C -0.155 4.155 12 C -0.115 4.115 13 S 1.480 4.520 14 O -0.910 6.910 15 C -0.554 4.554 16 C -0.039 4.039 17 C -0.568 4.568 18 H 0.056 0.944 19 C -0.190 4.190 20 N -0.587 5.587 21 Si 0.759 3.241 22 H -0.206 1.206 23 H -0.198 1.198 24 H -0.155 1.155 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.183 0.817 29 H 0.171 0.829 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.161 0.839 39 H 0.072 0.928 40 H 0.015 0.985 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.201 -10.648 -28.383 30.338 hybrid contribution 1.151 2.803 1.099 3.223 sum 2.351 -7.844 -27.284 28.486 Atomic orbital electron populations 1.21649 0.87672 1.05561 1.03399 1.26353 1.05707 1.07068 1.08860 0.90493 1.19113 0.98477 0.95216 0.94195 1.21386 1.00945 0.93116 0.98975 1.20998 0.96947 1.01109 0.93178 1.21070 0.98261 0.94393 0.97706 1.20875 0.99125 0.95784 0.95687 1.20667 0.99524 0.99816 0.94893 1.21114 0.97712 0.99072 0.94423 1.22304 0.98142 0.93453 1.01585 1.21112 0.97572 0.99818 0.93047 1.69442 0.87198 1.10329 0.85057 1.92972 1.29338 1.83717 1.84942 1.27526 1.11415 1.07568 1.08885 1.19202 0.95075 0.97806 0.91788 1.21377 1.27650 1.16618 0.91194 0.94358 1.25968 0.97310 0.99624 0.96102 1.70041 1.45427 1.43103 1.00162 0.85862 0.78548 0.80358 0.79327 1.20646 1.19803 1.15543 0.91159 0.91245 0.87775 0.81712 0.82876 0.87860 0.89375 0.91343 0.91255 0.88360 0.89489 0.88775 0.92504 0.83902 0.92756 0.98455 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.76 71.98 0.63 -1.62 16 2 C -0.36 -9.14 3.07 29.85 0.09 -9.05 16 3 H 0.08 2.20 7.87 -2.39 -0.02 2.18 16 4 C -0.07 -1.70 4.78 -19.89 -0.10 -1.80 16 5 C -0.13 -2.42 8.78 22.24 0.20 -2.23 16 6 C -0.10 -1.84 10.04 22.30 0.22 -1.62 16 7 C -0.11 -2.18 6.14 -19.59 -0.12 -2.30 16 8 C -0.11 -2.60 6.14 -19.60 -0.12 -2.72 16 9 C -0.13 -3.45 9.67 22.30 0.22 -3.24 16 10 C -0.09 -1.46 6.76 30.46 0.21 -1.25 16 11 C -0.12 -1.45 7.07 31.46 0.22 -1.23 16 12 C -0.08 -1.00 6.77 30.53 0.21 -0.79 16 13 S 1.28 39.63 12.28 -56.49 -0.69 38.94 16 14 O -0.91 -41.26 18.14 -148.98 -2.70 -43.96 16 15 C -0.42 -15.69 5.26 71.98 0.38 -15.32 16 16 C 0.00 -0.01 4.05 29.85 0.12 0.11 16 17 C -0.53 -30.88 9.66 25.60 0.25 -30.64 16 18 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 19 C 0.01 0.44 5.47 84.65 0.46 0.90 16 20 N -0.95 -59.76 13.96 21.45 0.30 -59.47 16 21 Si 0.94 44.67 27.47 68.60 1.88 46.55 16 22 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.23 -9.93 6.54 99.48 0.65 -9.28 16 25 H 0.07 1.29 6.51 -2.38 -0.02 1.28 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.10 1.23 7.40 -2.39 -0.02 1.21 16 28 H 0.17 2.00 7.59 -2.91 -0.02 1.98 16 29 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.10 2.81 7.94 -2.91 -0.02 2.79 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.14 4.43 6.90 -2.39 -0.02 4.42 16 39 H 0.05 2.30 7.20 -2.39 -0.02 2.28 16 40 H 0.00 -0.15 7.57 -2.39 -0.02 -0.17 16 41 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -82.77 343.48 2.60 -80.17 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.94 Total: 10.55 kcal Atomic # 6 Polarization: -75.65 SS G_CDS: 2.87 Total: -72.78 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.30 Total: -59.47 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -2.70 Total: -43.96 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Atomic # 16 Polarization: 39.63 SS G_CDS: -0.69 Total: 38.94 kcal Total: -82.77 2.60 -80.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417205643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.897 kcal (2) G-P(sol) polarization free energy of solvation -82.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds