Wall clock time and date at job start Tue Mar 31 2020 06:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00589 * 2 1 4 4 H 1.48506 * 109.46981 * 270.00046 * 3 2 1 5 5 H 1.48505 * 109.46832 * 29.99838 * 3 2 1 6 6 H 1.48498 * 109.47386 * 149.99966 * 3 2 1 7 7 C 1.37881 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99918 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47265 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47707 * 54.99322 * 11 10 9 13 13 N 1.46910 * 109.47179 * 294.99764 * 11 10 9 14 14 C 1.50702 * 109.47220 * 174.99782 * 11 10 9 15 15 O 1.21288 * 119.99948 * 93.21305 * 14 11 10 16 16 N 1.34772 * 119.99933 * 273.21350 * 14 11 10 17 17 C 1.46538 * 124.97914 * 355.15894 * 16 14 11 18 18 C 1.53738 * 105.19480 * 179.97438 * 17 16 14 19 19 C 1.51211 * 104.58328 * 359.78944 * 18 17 16 20 20 C 1.38557 * 108.56135 * 0.35329 * 19 18 17 21 21 C 1.39616 * 119.05762 * 179.83278 * 20 19 18 22 22 C 1.37896 * 120.33740 * 359.74938 * 21 20 19 23 23 C 1.38216 * 120.24880 * 359.97438 * 22 21 20 24 24 C 1.38362 * 130.97521 * 179.55767 * 19 18 17 25 25 F 1.35097 * 119.95463 * 0.62052 * 24 19 18 26 26 H 0.97006 * 119.99350 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47579 * 59.99269 * 9 7 2 28 28 H 1.09000 * 109.47232 * 299.99410 * 9 7 2 29 29 H 1.09003 * 109.47233 * 59.99281 * 10 9 7 30 30 H 1.08997 * 109.46777 * 299.99436 * 10 9 7 31 31 H 1.00907 * 110.99643 * 300.00334 * 13 11 10 32 32 H 1.00898 * 110.99604 * 63.95327 * 13 11 10 33 33 H 1.08994 * 110.29598 * 298.90577 * 17 16 14 34 34 H 1.08997 * 110.29938 * 60.94965 * 17 16 14 35 35 H 1.08998 * 110.41592 * 118.77794 * 18 17 16 36 36 H 1.09000 * 110.41276 * 241.10460 * 18 17 16 37 37 H 1.08001 * 119.82991 * 179.77410 * 21 20 19 38 38 H 1.07996 * 119.86968 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.09727 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 1 0.7874 -5.0073 -0.8403 13 7 0.7286 -5.1181 1.2568 14 6 2.4544 -6.1300 -0.1227 15 8 2.8814 -6.6736 0.8739 16 7 2.8514 -6.5480 -1.3409 17 6 2.3318 -6.0406 -2.6137 18 6 3.0909 -6.8216 -3.6988 19 6 4.0166 -7.7382 -2.9310 20 6 3.8200 -7.5289 -1.5755 21 6 4.5675 -8.2712 -0.6593 22 6 5.4840 -9.2024 -1.1002 23 6 5.6700 -9.4094 -2.4541 24 6 4.9328 -8.6774 -3.3700 25 9 5.1127 -8.8768 -4.6940 26 1 -0.4849 0.8401 0.0004 27 1 0.6244 -2.5570 -0.8896 28 1 0.6239 -2.5567 0.8903 29 1 2.8718 -3.6045 0.8905 30 1 2.8716 -3.6045 -0.8895 31 1 1.3488 -5.1022 2.0526 32 1 0.0240 -4.4000 1.3331 33 1 1.2615 -6.2325 -2.6885 34 1 2.5313 -4.9730 -2.7049 35 1 2.3959 -7.4006 -4.3070 36 1 3.6664 -6.1402 -4.3253 37 1 4.4269 -8.1156 0.4002 38 1 6.0579 -9.7728 -0.3849 39 1 6.3882 -10.1396 -2.7966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424165314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:26 Heat of formation + Delta-G solvation = -59.606764 kcal Electronic energy + Delta-G solvation = -22958.240241 eV Core-core repulsion = 19393.613321 eV Total energy + Delta-G solvation = -3564.626920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.02932 -41.25332 -38.86045 -36.49023 -35.66557 -32.93946 -32.34404 -30.17329 -30.00128 -29.07469 -26.75471 -24.55483 -23.44114 -22.75645 -21.82137 -20.63428 -19.44555 -17.92513 -17.07654 -16.49549 -16.39592 -16.09468 -15.90280 -15.55598 -15.47652 -14.72789 -14.51712 -14.32005 -14.24719 -13.57082 -13.26688 -13.13439 -12.97540 -12.59561 -12.53211 -12.25961 -12.03665 -11.89903 -11.72088 -11.49740 -11.15231 -10.99293 -10.73909 -10.36834 -10.07792 -10.04211 -9.44645 -9.30984 -8.82774 -8.50094 -8.36611 -8.00000 -6.14251 -4.17654 0.97134 1.01330 2.60264 2.61565 3.23673 3.30818 3.34095 3.48865 4.03506 4.09092 4.29794 4.34912 4.58033 4.82479 4.84520 4.95525 5.03857 5.12142 5.21643 5.23183 5.37686 5.44490 5.53187 5.59714 5.66129 5.76276 5.90217 6.01104 6.15610 6.21611 6.27071 6.41046 6.75459 6.79029 7.16299 7.38492 7.43429 7.53077 7.75909 7.82459 8.03063 8.24222 8.87984 9.47763 10.96585 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021510 B = 0.003529 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.423603 B = 7932.592645 C = 8478.980969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.137 4.137 11 C 0.080 3.920 12 H 0.099 0.901 13 N -0.831 5.831 14 C 0.538 3.462 15 O -0.511 6.511 16 N -0.555 5.555 17 C 0.097 3.903 18 C -0.079 4.079 19 C -0.182 4.182 20 C 0.187 3.813 21 C -0.146 4.146 22 C -0.065 4.065 23 C -0.183 4.183 24 C 0.139 3.861 25 F -0.139 7.139 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.347 0.653 32 H 0.358 0.642 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.840 -16.743 -6.631 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.177 4.177 11 C -0.035 4.035 12 H 0.117 0.883 13 N -0.364 5.364 14 C 0.329 3.671 15 O -0.384 6.384 16 N -0.279 5.279 17 C -0.025 4.025 18 C -0.116 4.116 19 C -0.186 4.186 20 C 0.090 3.910 21 C -0.167 4.167 22 C -0.083 4.083 23 C -0.203 4.203 24 C 0.119 3.881 25 F -0.117 7.117 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.174 0.826 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.547 -17.503 -6.281 19.715 hybrid contribution 0.860 1.933 -0.137 2.120 sum 7.407 -15.571 -6.418 18.398 Atomic orbital electron populations 1.69945 1.06023 1.26874 1.50266 1.25003 0.94874 0.99328 0.95013 0.86577 0.79877 0.83282 0.78203 1.20561 1.21101 1.19862 1.21154 0.93034 0.90806 1.51377 0.92697 1.19096 0.93600 0.90956 0.97455 1.22398 1.00018 0.93552 1.01729 1.21489 0.94398 0.91608 0.96000 0.88285 1.58785 1.18470 1.56137 1.03031 1.21072 0.81565 0.83768 0.80681 1.90614 1.55649 1.56310 1.35825 1.46080 1.37509 1.36568 1.07702 1.22296 0.99423 1.00156 0.80641 1.21028 0.96718 0.96684 0.97147 1.19904 1.02327 1.01978 0.94408 1.18179 0.90109 0.89987 0.92729 1.21063 0.97407 0.97409 1.00788 1.20766 0.96437 0.96398 0.94730 1.20979 1.03101 1.03207 0.93050 1.16869 0.97069 0.96705 0.77474 1.91482 1.94339 1.94099 1.31806 0.92816 0.96241 0.96294 0.92376 0.92503 0.83929 0.82575 0.89224 0.88621 0.88883 0.88754 0.83661 0.84493 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.09 9.11 -34.44 -0.31 -14.40 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 10 C -0.14 -2.61 4.78 -26.73 -0.13 -2.74 16 11 C 0.08 1.31 2.77 -68.86 -0.19 1.12 16 12 H 0.10 1.50 7.17 -51.93 -0.37 1.13 16 13 N -0.83 -13.61 9.00 -5.65 -0.05 -13.66 16 14 C 0.54 8.91 6.99 -10.99 -0.08 8.83 16 15 O -0.51 -9.54 14.50 5.55 0.08 -9.46 16 16 N -0.56 -7.94 3.13 -112.91 -0.35 -8.29 16 17 C 0.10 1.07 6.27 -3.64 -0.02 1.05 16 18 C -0.08 -0.78 6.93 -27.25 -0.19 -0.97 16 19 C -0.18 -2.23 6.21 -104.21 -0.65 -2.87 16 20 C 0.19 2.61 6.62 -83.58 -0.55 2.05 16 21 C -0.15 -1.93 9.46 -39.19 -0.37 -2.30 16 22 C -0.06 -0.67 10.02 -39.71 -0.40 -1.07 16 23 C -0.18 -1.86 10.04 -39.49 -0.40 -2.26 16 24 C 0.14 1.61 7.29 -39.44 -0.29 1.32 16 25 F -0.14 -1.61 17.26 2.25 0.04 -1.57 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.05 7.76 -51.93 -0.40 0.65 16 31 H 0.35 5.74 8.55 -39.29 -0.34 5.40 16 32 H 0.36 5.84 7.55 -39.29 -0.30 5.54 16 33 H 0.09 0.85 7.94 -51.93 -0.41 0.44 16 34 H 0.10 1.04 7.76 -51.93 -0.40 0.64 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.15 2.10 6.29 -52.49 -0.33 1.77 16 38 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 329.34 15.07 4.96 4.96 Total: -1.00 -30.61 329.34 -8.40 -39.01 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.99 Total: 8.02 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -3.80 Total: -10.22 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.33 Total: -46.65 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.61 -8.40 -39.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424165314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.599 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds