Wall clock time and date at job start Tue Mar 31 2020 06:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00589 * 2 1 4 4 H 1.48506 * 109.46981 * 270.00046 * 3 2 1 5 5 H 1.48505 * 109.46832 * 29.99838 * 3 2 1 6 6 H 1.48498 * 109.47386 * 149.99966 * 3 2 1 7 7 C 1.37881 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99918 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47265 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47707 * 54.99322 * 11 10 9 13 13 N 1.46910 * 109.47179 * 294.99764 * 11 10 9 14 14 C 1.50702 * 109.47220 * 174.99782 * 11 10 9 15 15 O 1.21288 * 119.99948 * 93.21305 * 14 11 10 16 16 N 1.34772 * 119.99933 * 273.21350 * 14 11 10 17 17 C 1.46538 * 124.97914 * 355.15894 * 16 14 11 18 18 C 1.53738 * 105.19480 * 179.97438 * 17 16 14 19 19 C 1.51211 * 104.58328 * 359.78944 * 18 17 16 20 20 C 1.38557 * 108.56135 * 0.35329 * 19 18 17 21 21 C 1.39616 * 119.05762 * 179.83278 * 20 19 18 22 22 C 1.37896 * 120.33740 * 359.74938 * 21 20 19 23 23 C 1.38216 * 120.24880 * 359.97438 * 22 21 20 24 24 C 1.38362 * 130.97521 * 179.55767 * 19 18 17 25 25 F 1.35097 * 119.95463 * 0.62052 * 24 19 18 26 26 H 0.97006 * 119.99350 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47579 * 59.99269 * 9 7 2 28 28 H 1.09000 * 109.47232 * 299.99410 * 9 7 2 29 29 H 1.09003 * 109.47233 * 59.99281 * 10 9 7 30 30 H 1.08997 * 109.46777 * 299.99436 * 10 9 7 31 31 H 1.00907 * 110.99643 * 300.00334 * 13 11 10 32 32 H 1.00898 * 110.99604 * 63.95327 * 13 11 10 33 33 H 1.08994 * 110.29598 * 298.90577 * 17 16 14 34 34 H 1.08997 * 110.29938 * 60.94965 * 17 16 14 35 35 H 1.08998 * 110.41592 * 118.77794 * 18 17 16 36 36 H 1.09000 * 110.41276 * 241.10460 * 18 17 16 37 37 H 1.08001 * 119.82991 * 179.77410 * 21 20 19 38 38 H 1.07996 * 119.86968 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.09727 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 1 0.7874 -5.0073 -0.8403 13 7 0.7286 -5.1181 1.2568 14 6 2.4544 -6.1300 -0.1227 15 8 2.8814 -6.6736 0.8739 16 7 2.8514 -6.5480 -1.3409 17 6 2.3318 -6.0406 -2.6137 18 6 3.0909 -6.8216 -3.6988 19 6 4.0166 -7.7382 -2.9310 20 6 3.8200 -7.5289 -1.5755 21 6 4.5675 -8.2712 -0.6593 22 6 5.4840 -9.2024 -1.1002 23 6 5.6700 -9.4094 -2.4541 24 6 4.9328 -8.6774 -3.3700 25 9 5.1127 -8.8768 -4.6940 26 1 -0.4849 0.8401 0.0004 27 1 0.6244 -2.5570 -0.8896 28 1 0.6239 -2.5567 0.8903 29 1 2.8718 -3.6045 0.8905 30 1 2.8716 -3.6045 -0.8895 31 1 1.3488 -5.1022 2.0526 32 1 0.0240 -4.4000 1.3331 33 1 1.2615 -6.2325 -2.6885 34 1 2.5313 -4.9730 -2.7049 35 1 2.3959 -7.4006 -4.3070 36 1 3.6664 -6.1402 -4.3253 37 1 4.4269 -8.1156 0.4002 38 1 6.0579 -9.7728 -0.3849 39 1 6.3882 -10.1396 -2.7966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424165314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:25 Heat of formation + Delta-G solvation = -78.221131 kcal Electronic energy + Delta-G solvation = -22959.047421 eV Core-core repulsion = 19393.613321 eV Total energy + Delta-G solvation = -3565.434099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.91147 -42.30001 -40.01305 -37.45119 -37.18666 -34.88051 -33.31434 -31.75299 -31.12105 -29.95684 -28.28635 -26.14875 -24.37815 -24.00318 -22.72060 -22.21587 -20.60697 -19.17627 -18.42467 -17.98690 -17.43635 -17.05755 -16.97731 -16.57952 -16.48499 -16.43080 -15.75470 -15.68300 -15.53476 -14.85664 -14.64994 -14.29080 -14.09126 -13.87502 -13.56979 -13.44994 -13.38624 -13.04484 -12.90882 -12.79698 -12.57342 -12.54110 -12.34853 -11.85243 -11.75155 -11.32738 -11.29676 -10.91075 -10.56861 -9.76682 -9.71252 -8.98504 -8.22705 -6.32740 0.02951 0.10564 1.38736 1.39622 1.41530 1.50470 1.53954 2.39063 2.57088 3.05083 3.11424 3.21695 3.43757 3.55566 3.65932 3.95930 3.97717 4.06153 4.10380 4.13623 4.30308 4.32392 4.54162 4.61108 4.72400 4.76368 4.89292 4.95402 5.02190 5.06726 5.08550 5.29576 5.37116 5.44354 5.62206 5.78366 5.87952 5.96294 6.15315 6.19932 6.40569 6.80574 6.82016 7.36469 8.87912 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021510 B = 0.003529 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.423603 B = 7932.592645 C = 8478.980969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.033 3.967 10 C -0.120 4.120 11 C 0.089 3.911 12 H 0.114 0.886 13 N -0.829 5.829 14 C 0.536 3.464 15 O -0.541 6.541 16 N -0.556 5.556 17 C 0.088 3.912 18 C -0.074 4.074 19 C -0.183 4.183 20 C 0.152 3.848 21 C -0.163 4.163 22 C -0.059 4.059 23 C -0.171 4.171 24 C 0.128 3.872 25 F -0.138 7.138 26 H 0.264 0.736 27 H 0.007 0.993 28 H 0.005 0.995 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.346 0.654 32 H 0.358 0.642 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.167 0.833 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.018 -17.494 -7.993 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.584 4.584 8 H 0.071 0.929 9 C -0.004 4.004 10 C -0.160 4.160 11 C -0.026 4.026 12 H 0.132 0.868 13 N -0.362 5.362 14 C 0.327 3.673 15 O -0.417 6.417 16 N -0.278 5.278 17 C -0.033 4.033 18 C -0.111 4.111 19 C -0.187 4.187 20 C 0.056 3.944 21 C -0.184 4.184 22 C -0.077 4.077 23 C -0.190 4.190 24 C 0.108 3.892 25 F -0.117 7.117 26 H 0.073 0.927 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.173 0.827 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.185 0.815 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.739 -18.271 -7.681 21.277 hybrid contribution 0.541 2.082 0.247 2.165 sum 8.280 -16.189 -7.435 19.645 Atomic orbital electron populations 1.70048 1.07374 1.27792 1.51170 1.25811 0.95710 1.02795 0.94692 0.85576 0.78622 0.79121 0.78517 1.19671 1.20762 1.19421 1.21582 0.93262 0.92465 1.51096 0.92943 1.18947 0.93850 0.91562 0.96066 1.22124 0.98948 0.93579 1.01339 1.21373 0.94361 0.90347 0.96508 0.86783 1.58797 1.18375 1.55909 1.03086 1.20922 0.81430 0.83744 0.81213 1.90597 1.56719 1.57362 1.37015 1.46051 1.37461 1.36551 1.07784 1.22563 1.00615 1.00357 0.79719 1.21116 0.96713 0.96571 0.96736 1.20129 1.02481 1.02122 0.93969 1.18428 0.91135 0.90997 0.93791 1.21148 0.98633 0.98642 0.99974 1.21076 0.95526 0.95469 0.95626 1.21352 1.02480 1.02646 0.92541 1.17060 0.97378 0.97004 0.77772 1.91486 1.94334 1.94090 1.31761 0.92673 0.97498 0.97645 0.93638 0.91960 0.84092 0.82653 0.87545 0.88609 0.86849 0.87499 0.85601 0.81517 0.81549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.02 13.29 21.45 0.28 -52.74 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -29.45 9.11 25.60 0.23 -29.21 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.03 1.56 4.74 29.85 0.14 1.71 16 10 C -0.12 -4.61 4.78 30.59 0.15 -4.46 16 11 C 0.09 2.93 2.77 44.17 0.12 3.05 16 12 H 0.11 3.38 7.17 -2.39 -0.02 3.36 16 13 N -0.83 -27.46 9.00 -171.79 -1.55 -29.01 16 14 C 0.54 17.87 6.99 87.66 0.61 18.48 16 15 O -0.54 -20.71 14.50 -3.05 -0.04 -20.75 16 16 N -0.56 -15.68 3.13 -629.51 -1.97 -17.65 16 17 C 0.09 1.84 6.27 86.62 0.54 2.39 16 18 C -0.07 -1.33 6.93 30.26 0.21 -1.12 16 19 C -0.18 -4.19 6.21 -19.60 -0.12 -4.32 16 20 C 0.15 4.17 6.62 38.27 0.25 4.42 16 21 C -0.16 -4.27 9.46 22.52 0.21 -4.05 16 22 C -0.06 -1.10 10.02 22.18 0.22 -0.87 16 23 C -0.17 -2.97 10.04 22.33 0.22 -2.75 16 24 C 0.13 2.68 7.29 22.36 0.16 2.84 16 25 F -0.14 -2.86 17.26 44.97 0.78 -2.09 16 26 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 27 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.01 0.26 6.87 -2.39 -0.02 0.25 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 2.30 7.76 -2.39 -0.02 2.28 16 31 H 0.35 11.69 8.55 -89.69 -0.77 10.93 16 32 H 0.36 11.85 7.55 -89.70 -0.68 11.17 16 33 H 0.11 1.84 7.94 -2.39 -0.02 1.82 16 34 H 0.10 1.99 7.76 -2.39 -0.02 1.97 16 35 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.13 3.77 6.29 -2.91 -0.02 3.75 16 38 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -65.70 329.34 2.60 -63.10 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.35 Total: 27.31 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 3.42 Total: -12.96 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -3.23 Total: -99.39 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.04 Total: -20.75 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.09 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -65.70 2.60 -63.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424165314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.120 kcal (2) G-P(sol) polarization free energy of solvation -65.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds