Wall clock time and date at job start Tue Mar 31 2020 07:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00576 * 2 1 4 4 H 1.48492 * 109.47196 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47107 * 300.00358 * 3 2 1 6 6 H 1.48502 * 109.46598 * 59.99950 * 3 2 1 7 7 C 1.37877 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00128 * 173.53382 * 7 2 1 9 9 C 1.50699 * 120.00165 * 353.52830 * 7 2 1 10 10 C 1.53000 * 115.54829 * 295.00950 * 9 7 2 11 11 N 1.46898 * 109.47215 * 277.84116 * 10 9 7 12 12 C 1.46903 * 111.00095 * 185.13196 * 11 10 9 13 13 H 1.09000 * 109.47078 * 326.69535 * 12 11 10 14 14 C 1.50699 * 109.47096 * 86.69936 * 12 11 10 15 15 N 1.34770 * 119.99867 * 180.27475 * 14 12 11 16 16 O 1.21277 * 120.00088 * 359.97438 * 14 12 11 17 17 C 1.50706 * 109.47073 * 206.69531 * 12 11 10 18 18 C 1.38248 * 119.97372 * 313.78020 * 17 12 11 19 19 C 1.38193 * 120.02288 * 179.76921 * 18 17 12 20 20 C 1.38466 * 119.97696 * 0.49950 * 19 18 17 21 21 F 1.35100 * 120.02776 * 179.77218 * 20 19 18 22 22 C 1.38462 * 119.94211 * 359.74981 * 20 19 18 23 23 C 1.38194 * 119.98121 * 0.02562 * 22 20 19 24 24 C 1.52999 * 117.52021 * 80.70613 * 9 7 2 25 25 C 1.52998 * 117.50141 * 149.33842 * 9 7 2 26 26 H 0.97008 * 119.99204 * 5.01374 * 1 2 3 27 27 H 1.09007 * 109.47291 * 157.84549 * 10 9 7 28 28 H 1.09003 * 109.47521 * 37.84031 * 10 9 7 29 29 H 1.00904 * 111.00112 * 61.18175 * 11 10 9 30 30 H 0.97006 * 119.99913 * 179.72113 * 15 14 12 31 31 H 0.97006 * 120.00352 * 359.72112 * 15 14 12 32 32 H 1.08000 * 119.98710 * 0.02562 * 18 17 12 33 33 H 1.07996 * 120.01536 * 180.25370 * 19 18 17 34 34 H 1.08004 * 120.00813 * 179.97438 * 22 20 19 35 35 H 1.07997 * 119.99055 * 180.02562 * 23 22 20 36 36 H 1.09000 * 117.50271 * 214.97836 * 24 9 7 37 37 H 1.09000 * 117.49574 * 359.97438 * 24 9 7 38 38 H 1.09000 * 117.50056 * 359.97438 * 25 9 7 39 39 H 1.09001 * 117.49669 * 144.97583 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0793 -1.1971 -0.1059 9 6 1.2581 -2.4951 0.1460 10 6 0.5497 -2.7021 1.4862 11 7 1.5148 -3.1909 2.4799 12 6 0.8465 -3.5171 3.7468 13 1 0.0095 -2.8363 3.9018 14 6 0.3382 -4.9349 3.6962 15 7 -0.3179 -5.4536 4.7529 16 8 0.5148 -5.6072 2.7024 17 6 1.8266 -3.3751 4.8828 18 6 3.0940 -3.9162 4.7732 19 6 3.9951 -3.7825 5.8124 20 6 3.6247 -3.1153 6.9678 21 9 4.5033 -2.9880 7.9862 22 6 2.3533 -2.5783 7.0783 23 6 1.4554 -2.7092 6.0361 24 6 0.5881 -3.0703 -1.1034 25 6 1.8484 -3.7292 -0.5391 26 1 -0.4849 0.8370 -0.0734 27 1 -0.2496 -3.4334 1.3656 28 1 0.1280 -1.7555 1.8244 29 1 2.2560 -2.5216 2.6239 30 1 -0.6487 -6.3649 4.7188 31 1 -0.4595 -4.9157 5.5477 32 1 3.3814 -4.4400 3.8735 33 1 4.9866 -4.2017 5.7250 34 1 2.0631 -2.0580 7.9792 35 1 0.4638 -2.2900 6.1220 36 1 -0.3573 -3.5962 -0.9707 37 1 0.6867 -2.5075 -2.0317 38 1 2.7764 -3.6001 -1.0961 39 1 1.7324 -4.6885 -0.0347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429781871.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:18 Heat of formation + Delta-G solvation = -30.730386 kcal Electronic energy + Delta-G solvation = -23269.342137 eV Core-core repulsion = 19705.967391 eV Total energy + Delta-G solvation = -3563.374746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.99430 -40.02983 -38.43922 -36.74963 -34.41189 -33.40775 -31.96600 -31.25131 -30.58767 -26.75165 -25.43806 -23.79745 -22.98459 -22.18867 -20.87829 -19.86981 -19.01664 -17.79080 -17.22668 -16.88692 -16.55113 -15.94693 -15.68783 -15.39488 -14.63587 -14.50453 -14.24951 -13.89574 -13.76658 -13.67143 -13.41163 -13.37572 -12.75335 -12.40084 -12.31671 -11.74151 -11.39482 -11.15511 -11.02737 -10.91127 -10.84071 -10.40423 -10.02347 -9.81106 -9.49218 -9.30492 -9.20961 -8.77861 -8.62363 -8.42861 -8.03454 -7.59131 -6.02468 -4.07081 0.97491 1.13521 2.92551 3.25739 3.35114 3.39501 3.42399 3.67998 4.14627 4.39703 4.56049 4.65755 4.77550 4.86852 5.16482 5.21790 5.25231 5.29577 5.52866 5.71779 5.79914 5.87931 5.99750 6.15461 6.25896 6.41251 6.60973 6.68301 6.76313 6.87497 6.93988 6.98307 7.04507 7.24956 7.44231 7.58113 7.63450 7.86449 7.91497 8.14523 8.52943 8.56494 8.95466 9.56696 11.04960 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.005277 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.130954 B = 5304.680043 C = 6572.258774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.885 3.115 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.490 4.490 8 H 0.060 0.940 9 C 0.052 3.948 10 C 0.109 3.891 11 N -0.655 5.655 12 C 0.110 3.890 13 H 0.074 0.926 14 C 0.523 3.477 15 N -0.863 5.863 16 O -0.509 6.509 17 C -0.096 4.096 18 C -0.060 4.060 19 C -0.153 4.153 20 C 0.096 3.904 21 F -0.143 7.143 22 C -0.155 4.155 23 C -0.084 4.084 24 C -0.177 4.177 25 C -0.190 4.190 26 H 0.259 0.741 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.352 0.648 30 H 0.397 0.603 31 H 0.396 0.604 32 H 0.146 0.854 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -6.548 15.609 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.713 3.287 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.051 3.949 10 C -0.019 4.019 11 N -0.288 5.288 12 C -0.004 4.004 13 H 0.092 0.908 14 C 0.306 3.694 15 N -0.428 5.428 16 O -0.381 6.381 17 C -0.097 4.097 18 C -0.078 4.078 19 C -0.172 4.172 20 C 0.077 3.923 21 F -0.122 7.122 22 C -0.174 4.174 23 C -0.102 4.102 24 C -0.215 4.215 25 C -0.227 4.227 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.173 0.827 30 H 0.227 0.773 31 H 0.223 0.777 32 H 0.163 0.837 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.053 -7.324 14.695 16.453 hybrid contribution 0.067 1.838 0.856 2.029 sum 1.120 -5.486 15.552 16.529 Atomic orbital electron populations 1.69996 1.05830 1.26444 1.49530 1.24991 0.94765 0.98761 0.94846 0.86643 0.80407 0.84080 0.77557 1.19666 1.21090 1.21103 1.20614 0.93048 0.88989 1.50112 0.92225 1.18691 0.97130 0.91151 0.87933 1.21501 0.92190 0.96452 0.91747 1.60258 1.13666 1.50192 1.04674 1.20296 0.95660 0.94048 0.90424 0.90813 1.20616 0.77101 0.89187 0.82534 1.43889 1.61650 1.18468 1.18841 1.90745 1.55060 1.60992 1.31303 1.19808 0.95392 0.99640 0.94837 1.21075 0.91913 0.96597 0.98259 1.21194 1.01426 1.01681 0.92887 1.17779 0.88026 1.00709 0.85817 1.91489 1.68272 1.94274 1.58145 1.21052 0.92599 1.02899 1.00858 1.20943 0.99711 0.97579 0.92003 1.22699 0.94112 1.04343 1.00371 1.22739 0.96200 0.97923 1.05883 0.93160 0.93936 0.93491 0.82738 0.77253 0.77679 0.83667 0.84642 0.84763 0.84831 0.92221 0.90720 0.91344 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.40 12.47 55.43 0.69 -23.71 16 2 C 0.07 1.84 5.26 -17.82 -0.09 1.75 16 3 Si 0.89 20.69 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.49 -13.07 8.83 -34.44 -0.30 -13.37 16 8 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 9 C 0.05 1.28 1.49 -155.66 -0.23 1.05 16 10 C 0.11 2.46 5.16 -3.83 -0.02 2.44 16 11 N -0.66 -12.35 5.31 -109.18 -0.58 -12.93 16 12 C 0.11 1.63 2.63 -70.01 -0.18 1.45 16 13 H 0.07 1.06 7.63 -51.93 -0.40 0.66 16 14 C 0.52 7.97 7.20 -10.99 -0.08 7.89 16 15 N -0.86 -8.84 8.78 31.22 0.27 -8.56 16 16 O -0.51 -10.15 16.96 5.56 0.09 -10.05 16 17 C -0.10 -1.19 4.45 -104.61 -0.47 -1.65 16 18 C -0.06 -0.76 9.05 -39.59 -0.36 -1.12 16 19 C -0.15 -1.75 10.03 -39.51 -0.40 -2.15 16 20 C 0.10 1.10 7.30 -39.41 -0.29 0.81 16 21 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 22 C -0.16 -1.57 10.03 -39.51 -0.40 -1.97 16 23 C -0.08 -0.86 9.66 -39.59 -0.38 -1.24 16 24 C -0.18 -4.33 9.88 -26.73 -0.26 -4.59 16 25 C -0.19 -4.43 9.89 -26.73 -0.26 -4.70 16 26 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 27 H 0.04 0.99 7.55 -51.92 -0.39 0.60 16 28 H 0.05 1.15 7.17 -51.93 -0.37 0.78 16 29 H 0.35 6.74 8.15 -39.29 -0.32 6.42 16 30 H 0.40 3.58 8.93 -40.82 -0.36 3.21 16 31 H 0.40 2.92 8.72 -40.82 -0.36 2.57 16 32 H 0.15 1.98 7.91 -52.49 -0.42 1.56 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 35 H 0.13 1.07 7.99 -52.49 -0.42 0.65 16 36 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 37 H 0.07 1.89 8.14 -51.93 -0.42 1.46 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -31.05 341.29 -8.20 -39.25 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -5.11 Total: 12.27 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -3.73 Total: -15.39 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.39 Total: -45.21 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.05 -8.20 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429781871.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.519 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds