Wall clock time and date at job start Tue Mar 31 2020 07:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00243 * 2 1 4 4 H 1.48494 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46764 * 300.00257 * 3 2 1 6 6 H 1.48505 * 109.47130 * 59.99551 * 3 2 1 7 7 C 1.37876 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00198 * 183.60287 * 7 2 1 9 9 C 1.50703 * 120.00104 * 3.60475 * 7 2 1 10 10 C 1.53007 * 115.54606 * 294.41649 * 9 7 2 11 11 N 1.46896 * 109.47112 * 279.26626 * 10 9 7 12 12 C 1.46895 * 110.99958 * 174.79306 * 11 10 9 13 13 H 1.09008 * 109.47150 * 33.34399 * 12 11 10 14 14 C 1.50696 * 109.47112 * 273.34293 * 12 11 10 15 15 N 1.34780 * 119.99840 * 180.02562 * 14 12 11 16 16 O 1.21273 * 120.00172 * 0.02562 * 14 12 11 17 17 C 1.50709 * 109.47059 * 153.34343 * 12 11 10 18 18 C 1.38239 * 119.97258 * 45.83511 * 17 12 11 19 19 C 1.38201 * 120.02101 * 179.72561 * 18 17 12 20 20 C 1.38455 * 119.97850 * 0.52639 * 19 18 17 21 21 F 1.35096 * 120.03097 * 179.72867 * 20 19 18 22 22 C 1.38465 * 119.94705 * 359.74732 * 20 19 18 23 23 C 1.38202 * 119.97280 * 0.02562 * 22 20 19 24 24 C 1.52996 * 117.51756 * 80.11420 * 9 7 2 25 25 C 1.52991 * 117.50322 * 148.74415 * 9 7 2 26 26 H 0.96996 * 120.00327 * 5.00172 * 1 2 3 27 27 H 1.09006 * 109.46521 * 159.26849 * 10 9 7 28 28 H 1.09001 * 109.47168 * 39.27042 * 10 9 7 29 29 H 1.00903 * 110.99749 * 298.74787 * 11 10 9 30 30 H 0.97004 * 120.00062 * 359.97438 * 15 14 12 31 31 H 0.97005 * 119.99632 * 180.02562 * 15 14 12 32 32 H 1.08001 * 119.98865 * 359.97438 * 18 17 12 33 33 H 1.08004 * 120.00725 * 180.25177 * 19 18 17 34 34 H 1.07998 * 120.01434 * 179.97438 * 22 20 19 35 35 H 1.07994 * 119.98748 * 180.02562 * 23 22 20 36 36 H 1.09007 * 117.49752 * 214.97934 * 24 9 7 37 37 H 1.09003 * 117.50025 * 359.97438 * 24 9 7 38 38 H 1.09000 * 117.49644 * 359.97438 * 25 9 7 39 39 H 1.08997 * 117.50109 * 144.97830 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0829 -1.1949 0.0593 9 6 1.2533 -2.4979 -0.0809 10 6 0.3623 -2.8222 1.1199 11 7 1.1843 -3.3751 2.2045 12 6 0.3834 -3.5838 3.4181 13 1 -0.6337 -3.8594 3.1393 14 6 0.3556 -2.3122 4.2264 15 7 -0.3238 -2.2678 5.3896 16 8 0.9445 -1.3289 3.8302 17 6 0.9958 -4.6884 4.2403 18 6 2.3599 -4.7082 4.4636 19 6 2.9218 -5.7175 5.2222 20 6 2.1195 -6.7151 5.7495 21 9 2.6684 -7.7053 6.4866 22 6 0.7541 -6.6974 5.5204 23 6 0.1937 -5.6844 4.7655 24 6 0.7722 -2.9515 -1.4606 25 6 1.9432 -3.6679 -0.7851 26 1 -0.4850 0.8368 -0.0732 27 1 -0.3912 -3.5532 0.8262 28 1 -0.1291 -1.9121 1.4640 29 1 1.6345 -4.2310 1.9167 30 1 -0.7951 -3.0543 5.7063 31 1 -0.3420 -1.4492 5.9097 32 1 2.9862 -3.9324 4.0485 33 1 3.9871 -5.7305 5.3999 34 1 0.1273 -7.4752 5.9309 35 1 -0.8713 -5.6701 4.5870 36 1 -0.1792 -3.4810 -1.5129 37 1 0.9986 -2.3066 -2.3097 38 1 2.9403 -3.4945 -1.1899 39 1 1.7626 -4.6687 -0.3928 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429781872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:20 Heat of formation + Delta-G solvation = -24.950371 kcal Electronic energy + Delta-G solvation = -23336.104432 eV Core-core repulsion = 19772.980326 eV Total energy + Delta-G solvation = -3563.124106 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.02619 -39.97120 -38.32827 -36.86507 -34.38591 -33.22034 -31.80741 -31.27500 -30.59007 -26.68964 -25.37082 -23.79826 -22.99664 -22.16765 -21.08309 -19.74294 -18.91324 -17.82414 -17.12524 -16.84948 -16.58100 -15.85792 -15.71860 -15.36131 -14.55797 -14.46673 -14.16585 -13.85804 -13.75769 -13.58311 -13.39670 -13.06050 -12.97915 -12.55809 -12.31574 -11.72864 -11.21444 -11.19176 -10.99112 -10.85698 -10.50518 -10.37278 -10.13484 -9.62768 -9.39246 -9.25351 -9.23949 -8.72134 -8.61623 -8.40526 -7.99584 -7.58790 -5.84966 -3.85261 0.94764 1.10450 3.14298 3.42066 3.43697 3.52677 3.55731 3.80193 4.11532 4.54852 4.60129 4.65247 4.74730 4.84803 5.16322 5.23735 5.35696 5.39945 5.50643 5.60177 5.77110 5.85749 5.96449 6.14268 6.19174 6.36681 6.41879 6.52268 6.68949 6.73718 6.75015 6.90983 7.09134 7.14769 7.41950 7.62785 7.75131 7.90357 8.09450 8.14559 8.62943 8.79975 9.11046 9.78066 11.24942 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.004524 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.966122 B = 6187.986901 C = 6704.001822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.467 4.467 8 H 0.057 0.943 9 C 0.065 3.935 10 C 0.105 3.895 11 N -0.646 5.646 12 C 0.113 3.887 13 H 0.070 0.930 14 C 0.514 3.486 15 N -0.867 5.867 16 O -0.483 6.483 17 C -0.096 4.096 18 C -0.060 4.060 19 C -0.153 4.153 20 C 0.095 3.905 21 F -0.143 7.143 22 C -0.156 4.156 23 C -0.085 4.085 24 C -0.182 4.182 25 C -0.210 4.210 26 H 0.256 0.744 27 H -0.007 1.007 28 H 0.101 0.899 29 H 0.336 0.664 30 H 0.392 0.608 31 H 0.397 0.603 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -12.911 12.321 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.064 3.936 10 C -0.023 4.023 11 N -0.278 5.278 12 C -0.001 4.001 13 H 0.087 0.913 14 C 0.296 3.704 15 N -0.433 5.433 16 O -0.353 6.353 17 C -0.097 4.097 18 C -0.078 4.078 19 C -0.172 4.172 20 C 0.076 3.924 21 F -0.122 7.122 22 C -0.175 4.175 23 C -0.104 4.104 24 C -0.221 4.221 25 C -0.247 4.247 26 H 0.065 0.935 27 H 0.011 0.989 28 H 0.120 0.880 29 H 0.155 0.845 30 H 0.219 0.781 31 H 0.227 0.773 32 H 0.165 0.835 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.433 -11.623 12.140 16.868 hybrid contribution -0.379 -0.213 0.213 0.484 sum -1.811 -11.836 12.353 17.204 Atomic orbital electron populations 1.69915 1.05853 1.26286 1.50432 1.24830 0.94702 0.98649 0.94583 0.86581 0.80253 0.84262 0.77107 1.19899 1.21491 1.21138 1.20370 0.92286 0.88446 1.49320 0.92462 1.18776 0.95269 0.92110 0.87422 1.21727 0.92352 0.97948 0.90282 1.60080 1.31848 1.32371 1.03462 1.20280 0.97277 0.90138 0.92356 0.91282 1.20501 0.78755 0.90179 0.80954 1.43893 1.56925 1.17494 1.25027 1.90874 1.41038 1.35509 1.67879 1.19860 0.94233 0.96071 0.99542 1.21131 0.94711 0.97317 0.94686 1.21213 1.00692 0.94937 1.00331 1.17779 0.91985 0.87517 0.95130 1.91488 1.86167 1.59768 1.74764 1.21047 0.93231 1.00956 1.02251 1.20935 1.00086 0.93064 0.96326 1.22786 0.95285 1.03702 1.00287 1.22818 0.96790 0.96283 1.08852 0.93466 0.98888 0.88038 0.84514 0.78079 0.77281 0.83476 0.84623 0.84790 0.84891 0.92131 0.90312 0.90528 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 12.03 55.43 0.67 -25.19 16 2 C 0.07 2.12 5.38 -17.82 -0.10 2.02 16 3 Si 0.89 22.62 29.54 -169.99 -5.02 17.59 16 4 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.47 -13.15 8.83 -34.44 -0.30 -13.45 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.07 1.61 1.57 -155.66 -0.24 1.36 16 10 C 0.10 2.38 5.14 -3.82 -0.02 2.36 16 11 N -0.65 -12.38 5.36 -109.18 -0.58 -12.96 16 12 C 0.11 1.74 2.63 -70.02 -0.18 1.56 16 13 H 0.07 0.98 7.63 -51.92 -0.40 0.58 16 14 C 0.51 8.87 7.21 -10.99 -0.08 8.79 16 15 N -0.87 -10.38 8.77 31.22 0.27 -10.11 16 16 O -0.48 -11.33 16.95 5.56 0.09 -11.23 16 17 C -0.10 -1.18 4.45 -104.61 -0.47 -1.64 16 18 C -0.06 -0.76 9.04 -39.59 -0.36 -1.12 16 19 C -0.15 -1.71 10.03 -39.51 -0.40 -2.11 16 20 C 0.10 1.04 7.30 -39.42 -0.29 0.76 16 21 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 22 C -0.16 -1.48 10.03 -39.51 -0.40 -1.88 16 23 C -0.09 -0.82 9.66 -39.59 -0.38 -1.21 16 24 C -0.18 -4.22 9.88 -26.74 -0.26 -4.49 16 25 C -0.21 -4.51 9.59 -26.74 -0.26 -4.76 16 26 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 27 H -0.01 -0.15 7.94 -51.93 -0.41 -0.56 16 28 H 0.10 2.72 6.44 -51.93 -0.33 2.38 16 29 H 0.34 5.88 7.65 -39.29 -0.30 5.58 16 30 H 0.39 3.36 8.72 -40.82 -0.36 3.01 16 31 H 0.40 4.41 8.93 -40.82 -0.36 4.04 16 32 H 0.15 2.09 7.90 -52.49 -0.41 1.68 16 33 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 0.96 7.99 -52.49 -0.42 0.55 16 36 H 0.06 1.31 8.08 -51.92 -0.42 0.89 16 37 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.06 1.16 8.01 -51.93 -0.42 0.74 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -33.10 339.79 -8.22 -41.31 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.07 Total: 10.88 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -3.73 Total: -13.80 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.36 Total: -48.27 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.10 -8.22 -41.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429781872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.361 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds