Wall clock time and date at job start Tue Mar 31 2020 06:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35599 * 117.00100 * 2 1 4 4 N 1.32693 * 120.54731 * 0.28056 * 3 2 1 5 5 C 1.31823 * 120.78900 * 180.28354 * 4 3 2 6 6 N 1.31734 * 121.96297 * 359.68305 * 5 4 3 7 7 C 1.32485 * 121.02034 * 0.02562 * 6 5 4 8 8 C 1.38779 * 119.09158 * 359.97438 * 7 6 5 9 9 N 1.40213 * 120.88571 * 179.97438 * 8 7 6 10 10 C 1.34770 * 120.00283 * 339.35735 * 9 8 7 11 11 O 1.21598 * 119.99789 * 4.17047 * 10 9 8 12 12 N 1.34773 * 120.00128 * 184.17236 * 10 9 8 13 13 C 1.46502 * 119.99842 * 179.72404 * 12 10 9 14 14 C 1.53002 * 109.47251 * 176.10362 * 13 12 10 15 15 C 1.50703 * 115.54757 * 55.78712 * 14 13 12 16 16 H 1.08009 * 119.99477 * 264.97188 * 15 14 13 17 17 C 1.37868 * 120.00428 * 84.97238 * 15 14 13 18 18 N 1.31522 * 119.99789 * 1.57943 * 17 15 14 19 19 Si 1.86803 * 120.00401 * 181.58575 * 17 15 14 20 20 H 1.48491 * 109.47108 * 89.99809 * 19 17 15 21 21 H 1.48501 * 109.46809 * 210.00133 * 19 17 15 22 22 H 1.48499 * 109.46678 * 329.99602 * 19 17 15 23 23 C 1.52996 * 117.49926 * 270.11846 * 14 13 12 24 24 C 1.52996 * 117.49944 * 201.45799 * 14 13 12 25 25 H 1.09000 * 109.47316 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47334 * 300.00647 * 1 2 3 27 27 H 1.09002 * 109.46571 * 60.00118 * 1 2 3 28 28 H 1.08006 * 119.01821 * 179.70385 * 5 4 3 29 29 H 1.08011 * 120.45519 * 179.97438 * 7 6 5 30 30 H 0.97004 * 119.99530 * 159.35815 * 9 8 7 31 31 H 0.96992 * 120.00400 * 359.97438 * 12 10 9 32 32 H 1.09001 * 109.47352 * 296.10631 * 13 12 10 33 33 H 1.09000 * 109.47424 * 56.10220 * 13 12 10 34 34 H 0.97002 * 119.99681 * 185.02180 * 18 17 15 35 35 H 1.09002 * 117.50011 * 359.97438 * 23 14 13 36 36 H 1.08999 * 117.50167 * 145.01359 * 23 14 13 37 37 H 1.09007 * 117.49577 * 214.98162 * 24 14 13 38 38 H 1.08996 * 117.49908 * 359.97243 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 7 1.3326 2.3279 0.0056 5 6 1.9261 3.5050 0.0000 6 7 3.2380 3.6245 -0.0051 7 6 4.0209 2.5557 -0.0053 8 6 3.4414 1.2947 0.0005 9 7 4.2342 0.1382 0.0000 10 6 5.5142 0.1989 -0.4173 11 8 6.0045 1.2693 -0.7213 12 7 6.2509 -0.9269 -0.4976 13 6 7.6405 -0.8617 -0.9570 14 6 8.2744 -2.2510 -0.8631 15 6 7.5502 -3.3471 -1.6015 16 1 6.8416 -3.9731 -1.0794 17 6 7.7923 -3.5509 -2.9434 18 7 8.6780 -2.8090 -3.5719 19 14 6.8622 -4.8804 -3.8690 20 1 5.6142 -4.3086 -4.4352 21 1 7.7110 -5.4033 -4.9696 22 1 6.5222 -5.9862 -2.9379 23 6 8.9706 -2.6228 0.4476 24 6 9.8013 -2.3284 -0.8039 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.3186 4.3980 -0.0001 29 1 5.0956 2.6643 -0.0099 30 1 3.8612 -0.7055 0.2999 31 1 5.8599 -1.7807 -0.2548 32 1 7.6655 -0.5201 -1.9918 33 1 8.1979 -0.1650 -0.3309 34 1 8.7962 -2.9023 -4.5302 35 1 8.9774 -1.8774 1.2429 36 1 8.9051 -3.6601 0.7757 37 1 10.2820 -3.1723 -1.2989 38 1 10.3542 -1.3895 -0.8324 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432207575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:39 Heat of formation + Delta-G solvation = 17.294547 kcal Electronic energy + Delta-G solvation = -22965.480718 eV Core-core repulsion = 19424.108451 eV Total energy + Delta-G solvation = -3541.372267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48141 -39.68953 -38.51919 -36.93914 -34.97951 -33.67992 -33.04105 -32.03871 -30.22195 -27.72038 -26.41394 -25.34425 -23.99170 -23.69202 -21.25881 -20.69994 -19.56460 -18.93294 -18.69129 -17.54359 -16.99891 -16.39536 -16.04935 -15.28317 -15.17352 -14.85313 -14.72316 -14.50256 -14.19030 -14.04539 -13.46967 -13.30916 -12.76640 -12.32343 -12.18016 -11.84105 -11.67319 -11.38668 -11.14302 -11.02066 -10.98019 -10.58233 -10.29607 -10.17063 -9.93655 -9.58648 -9.28006 -9.11504 -8.63116 -8.48875 -8.23379 -7.95357 -6.14883 -4.25037 0.91027 1.08882 2.69052 2.73757 3.21184 3.29693 3.30108 3.37739 3.83446 3.98558 4.28781 4.30239 4.46291 4.73063 5.01024 5.06863 5.07812 5.14851 5.29130 5.34196 5.62386 5.94194 6.06953 6.26095 6.39209 6.46107 6.50646 6.64277 6.71706 6.76532 7.00423 7.05097 7.09621 7.20183 7.32315 7.48240 7.73518 8.05612 8.25715 8.32050 8.76686 8.82535 9.43306 10.92996 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.004081 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.992085 B = 6859.886810 C = 7741.313585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.305 6.305 3 C 0.323 3.677 4 N -0.556 5.556 5 C 0.291 3.709 6 N -0.517 5.517 7 C 0.144 3.856 8 C 0.070 3.930 9 N -0.670 5.670 10 C 0.698 3.302 11 O -0.586 6.586 12 N -0.704 5.704 13 C 0.179 3.821 14 C 0.023 3.977 15 C -0.502 4.502 16 H 0.060 0.940 17 C 0.075 3.925 18 N -0.872 5.872 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.211 4.211 24 C -0.142 4.142 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.197 0.803 29 H 0.212 0.788 30 H 0.414 0.586 31 H 0.403 0.597 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 5.657 7.967 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.209 6.209 3 C 0.132 3.868 4 N -0.286 5.286 5 C 0.003 3.997 6 N -0.235 5.235 7 C -0.021 4.021 8 C -0.033 4.033 9 N -0.317 5.317 10 C 0.399 3.601 11 O -0.466 6.466 12 N -0.355 5.355 13 C 0.056 3.944 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.078 0.922 17 C -0.129 4.129 18 N -0.508 5.508 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.248 4.248 24 C -0.180 4.180 25 H 0.117 0.883 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.213 0.787 29 H 0.227 0.773 30 H 0.250 0.750 31 H 0.238 0.762 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.836 6.977 7.479 16.413 hybrid contribution -0.753 -2.232 -0.489 2.406 sum -13.589 4.745 6.990 16.002 Atomic orbital electron populations 1.22917 0.76529 1.03295 1.02620 1.86198 1.23475 1.23728 1.87536 1.19792 0.87711 0.85795 0.93482 1.68032 1.41028 0.98794 1.20754 1.24568 0.89075 0.93508 0.92588 1.68543 1.06013 1.33414 1.15522 1.24404 1.03195 0.84287 0.90223 1.18613 0.87508 0.89833 1.07305 1.42428 1.11265 1.10266 1.67782 1.16017 0.79986 0.85540 0.78589 1.90708 1.71105 1.27761 1.57023 1.45180 1.14390 1.07412 1.68548 1.20935 0.77517 0.97269 0.98704 1.19032 0.91955 0.92522 0.94275 1.20327 1.24510 1.15032 0.94111 0.92209 1.24977 0.94241 0.95892 0.97797 1.69986 1.32062 1.39657 1.09111 0.86647 0.79793 0.82180 0.79747 1.20653 1.21160 1.19805 1.23057 1.09840 1.00197 0.91706 1.22473 0.95324 1.00927 0.99295 0.88271 0.92091 0.92060 0.78652 0.77260 0.75046 0.76243 0.91266 0.93901 0.92796 0.91612 0.90385 0.89557 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.41 101.05 1.05 1.41 16 2 O -0.30 -3.68 9.98 -18.49 -0.18 -3.86 16 3 C 0.32 4.41 7.55 -16.54 -0.12 4.29 16 4 N -0.56 -7.11 9.38 -14.50 -0.14 -7.25 16 5 C 0.29 3.52 12.28 -92.18 -1.13 2.38 16 6 N -0.52 -7.42 10.43 -14.51 -0.15 -7.57 16 7 C 0.14 2.23 10.13 -17.07 -0.17 2.06 16 8 C 0.07 1.05 6.58 -83.18 -0.55 0.50 16 9 N -0.67 -9.82 5.35 -13.91 -0.07 -9.90 16 10 C 0.70 12.49 8.48 -86.93 -0.74 11.75 16 11 O -0.59 -11.99 13.15 5.28 0.07 -11.92 16 12 N -0.70 -12.90 5.42 -65.22 -0.35 -13.26 16 13 C 0.18 3.82 5.56 -4.04 -0.02 3.79 16 14 C 0.02 0.51 1.57 -155.66 -0.25 0.27 16 15 C -0.50 -12.32 8.15 -34.44 -0.28 -12.60 16 16 H 0.06 1.43 7.81 -52.48 -0.41 1.02 16 17 C 0.08 1.93 5.42 -17.82 -0.10 1.84 16 18 N -0.87 -23.51 12.72 55.43 0.70 -22.80 16 19 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 23 C -0.21 -4.20 9.93 -26.70 -0.27 -4.47 16 24 C -0.14 -3.13 9.25 -26.70 -0.25 -3.37 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.20 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.21 3.56 5.31 -52.49 -0.28 3.28 16 30 H 0.41 5.06 8.40 -40.82 -0.34 4.71 16 31 H 0.40 6.78 8.02 -40.82 -0.33 6.45 16 32 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.04 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.09 2.05 8.14 -51.92 -0.42 1.63 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -29.07 331.71 -7.68 -36.76 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -4.72 Total: 12.00 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -2.82 Total: 7.84 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.01 Total: -60.78 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.12 Total: -15.78 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.07 -7.68 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432207575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.050 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds