Wall clock time and date at job start Tue Mar 31 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35599 * 117.00100 * 2 1 4 4 N 1.32693 * 120.54731 * 0.28056 * 3 2 1 5 5 C 1.31823 * 120.78900 * 180.28354 * 4 3 2 6 6 N 1.31734 * 121.96297 * 359.68305 * 5 4 3 7 7 C 1.32485 * 121.02034 * 0.02562 * 6 5 4 8 8 C 1.38779 * 119.09158 * 359.97438 * 7 6 5 9 9 N 1.40213 * 120.88571 * 179.97438 * 8 7 6 10 10 C 1.34770 * 120.00283 * 339.35735 * 9 8 7 11 11 O 1.21598 * 119.99789 * 4.17047 * 10 9 8 12 12 N 1.34773 * 120.00128 * 184.17236 * 10 9 8 13 13 C 1.46502 * 119.99842 * 179.72404 * 12 10 9 14 14 C 1.53002 * 109.47251 * 176.10362 * 13 12 10 15 15 C 1.50703 * 115.54757 * 55.78712 * 14 13 12 16 16 H 1.08009 * 119.99477 * 264.97188 * 15 14 13 17 17 C 1.37868 * 120.00428 * 84.97238 * 15 14 13 18 18 N 1.31522 * 119.99789 * 1.57943 * 17 15 14 19 19 Si 1.86803 * 120.00401 * 181.58575 * 17 15 14 20 20 H 1.48491 * 109.47108 * 89.99809 * 19 17 15 21 21 H 1.48501 * 109.46809 * 210.00133 * 19 17 15 22 22 H 1.48499 * 109.46678 * 329.99602 * 19 17 15 23 23 C 1.52996 * 117.49926 * 270.11846 * 14 13 12 24 24 C 1.52996 * 117.49944 * 201.45799 * 14 13 12 25 25 H 1.09000 * 109.47316 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47334 * 300.00647 * 1 2 3 27 27 H 1.09002 * 109.46571 * 60.00118 * 1 2 3 28 28 H 1.08006 * 119.01821 * 179.70385 * 5 4 3 29 29 H 1.08011 * 120.45519 * 179.97438 * 7 6 5 30 30 H 0.97004 * 119.99530 * 159.35815 * 9 8 7 31 31 H 0.96992 * 120.00400 * 359.97438 * 12 10 9 32 32 H 1.09001 * 109.47352 * 296.10631 * 13 12 10 33 33 H 1.09000 * 109.47424 * 56.10220 * 13 12 10 34 34 H 0.97002 * 119.99681 * 185.02180 * 18 17 15 35 35 H 1.09002 * 117.50011 * 359.97438 * 23 14 13 36 36 H 1.08999 * 117.50167 * 145.01359 * 23 14 13 37 37 H 1.09007 * 117.49577 * 214.98162 * 24 14 13 38 38 H 1.08996 * 117.49908 * 359.97243 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 7 1.3326 2.3279 0.0056 5 6 1.9261 3.5050 0.0000 6 7 3.2380 3.6245 -0.0051 7 6 4.0209 2.5557 -0.0053 8 6 3.4414 1.2947 0.0005 9 7 4.2342 0.1382 0.0000 10 6 5.5142 0.1989 -0.4173 11 8 6.0045 1.2693 -0.7213 12 7 6.2509 -0.9269 -0.4976 13 6 7.6405 -0.8617 -0.9570 14 6 8.2744 -2.2510 -0.8631 15 6 7.5502 -3.3471 -1.6015 16 1 6.8416 -3.9731 -1.0794 17 6 7.7923 -3.5509 -2.9434 18 7 8.6780 -2.8090 -3.5719 19 14 6.8622 -4.8804 -3.8690 20 1 5.6142 -4.3086 -4.4352 21 1 7.7110 -5.4033 -4.9696 22 1 6.5222 -5.9862 -2.9379 23 6 8.9706 -2.6228 0.4476 24 6 9.8013 -2.3284 -0.8039 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.3186 4.3980 -0.0001 29 1 5.0956 2.6643 -0.0099 30 1 3.8612 -0.7055 0.2999 31 1 5.8599 -1.7807 -0.2548 32 1 7.6655 -0.5201 -1.9918 33 1 8.1979 -0.1650 -0.3309 34 1 8.7962 -2.9023 -4.5302 35 1 8.9774 -1.8774 1.2429 36 1 8.9051 -3.6601 0.7757 37 1 10.2820 -3.1723 -1.2989 38 1 10.3542 -1.3895 -0.8324 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432207575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:38 Heat of formation + Delta-G solvation = -3.215119 kcal Electronic energy + Delta-G solvation = -22966.370084 eV Core-core repulsion = 19424.108451 eV Total energy + Delta-G solvation = -3542.261633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.57999 -41.03649 -39.47617 -38.61843 -36.26816 -35.19582 -34.12107 -33.95260 -31.37014 -28.52644 -28.06920 -27.12889 -25.10873 -24.78288 -22.92563 -22.10552 -21.28871 -20.11642 -19.73081 -18.91808 -18.17268 -17.81346 -17.36339 -16.72767 -16.47351 -16.20887 -16.09398 -15.85652 -15.46056 -15.26260 -14.93956 -14.54768 -14.40940 -13.85609 -13.47931 -13.07601 -12.93990 -12.82549 -12.72006 -12.38555 -12.36133 -12.28793 -11.99333 -11.46075 -11.28228 -11.14244 -10.92779 -10.43044 -10.41427 -10.13750 -9.89782 -9.18407 -8.09172 -6.22601 -0.16089 -0.00516 1.42619 1.42797 1.46181 1.53072 1.75959 2.00669 2.43180 2.74929 3.01279 3.09779 3.21542 3.31488 3.56393 3.70823 3.91217 4.26321 4.42092 4.42274 4.55133 4.58147 4.69035 4.74058 4.76748 4.97279 5.00572 5.05177 5.31863 5.36302 5.52786 5.60021 5.69796 5.74913 5.78628 5.88950 6.01879 6.37779 6.85089 6.96375 7.01925 7.41678 7.48087 8.98423 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.004081 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.992085 B = 6859.886810 C = 7741.313585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.331 3.669 4 N -0.555 5.555 5 C 0.300 3.700 6 N -0.533 5.533 7 C 0.134 3.866 8 C 0.048 3.952 9 N -0.655 5.655 10 C 0.700 3.300 11 O -0.615 6.615 12 N -0.701 5.701 13 C 0.196 3.804 14 C 0.002 3.998 15 C -0.502 4.502 16 H 0.066 0.934 17 C 0.027 3.973 18 N -0.906 5.906 19 Si 0.946 3.054 20 H -0.282 1.282 21 H -0.293 1.293 22 H -0.263 1.263 23 C -0.178 4.178 24 C -0.154 4.154 25 H 0.126 0.874 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.238 0.762 29 H 0.192 0.808 30 H 0.426 0.574 31 H 0.411 0.589 32 H 0.029 0.971 33 H 0.047 0.953 34 H 0.258 0.742 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.397 5.287 9.178 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.215 6.215 3 C 0.140 3.860 4 N -0.285 5.285 5 C 0.012 3.988 6 N -0.252 5.252 7 C -0.030 4.030 8 C -0.054 4.054 9 N -0.303 5.303 10 C 0.400 3.600 11 O -0.496 6.496 12 N -0.353 5.353 13 C 0.071 3.929 14 C 0.001 3.999 15 C -0.540 4.540 16 H 0.084 0.916 17 C -0.173 4.173 18 N -0.544 5.544 19 Si 0.772 3.228 20 H -0.208 1.208 21 H -0.219 1.219 22 H -0.187 1.187 23 C -0.215 4.215 24 C -0.192 4.192 25 H 0.144 0.856 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.253 0.747 29 H 0.208 0.792 30 H 0.264 0.736 31 H 0.247 0.753 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.198 6.577 8.724 18.717 hybrid contribution -0.160 -2.060 -0.820 2.223 sum -15.358 4.517 7.904 17.853 Atomic orbital electron populations 1.23222 0.74506 1.05274 1.02939 1.86203 1.25433 1.22875 1.86972 1.19869 0.87332 0.86649 0.92171 1.68182 1.40593 0.98752 1.20975 1.25408 0.88624 0.94625 0.90111 1.68561 1.07062 1.33022 1.16521 1.24121 1.02768 0.85210 0.90885 1.18634 0.88239 0.89439 1.09100 1.42117 1.10025 1.10983 1.67190 1.16052 0.80792 0.84810 0.78341 1.90710 1.72037 1.28731 1.58141 1.44934 1.13538 1.08038 1.68790 1.20515 0.79141 0.96628 0.96574 1.19081 0.91977 0.92526 0.96274 1.20654 1.24008 1.15087 0.94201 0.91638 1.25653 0.95131 0.97660 0.98903 1.70112 1.33795 1.41518 1.08943 0.85745 0.78328 0.80206 0.78493 1.20779 1.21886 1.18675 1.23041 1.06353 1.01149 0.90986 1.22395 0.95256 1.00484 1.01110 0.85562 0.91373 0.92081 0.74657 0.79168 0.73597 0.75278 0.95217 0.93435 0.93321 0.89208 0.89807 0.91864 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.41 113.37 1.18 1.68 16 2 O -0.31 -6.79 9.98 -89.09 -0.89 -7.68 16 3 C 0.33 8.46 7.55 84.98 0.64 9.10 16 4 N -0.55 -12.88 9.38 -312.48 -2.93 -15.81 16 5 C 0.30 6.54 12.28 180.89 2.22 8.77 16 6 N -0.53 -14.77 10.43 -199.81 -2.08 -16.85 16 7 C 0.13 4.18 10.13 84.72 0.86 5.04 16 8 C 0.05 1.40 6.58 38.34 0.25 1.65 16 9 N -0.65 -18.74 5.35 -316.20 -1.69 -20.43 16 10 C 0.70 25.01 8.48 179.06 1.52 26.53 16 11 O -0.61 -25.68 13.15 -4.02 -0.05 -25.73 16 12 N -0.70 -25.46 5.42 -478.52 -2.59 -28.05 16 13 C 0.20 8.43 5.56 86.38 0.48 8.91 16 14 C 0.00 0.10 1.57 -52.93 -0.08 0.01 16 15 C -0.50 -24.37 8.15 25.60 0.21 -24.16 16 16 H 0.07 3.04 7.81 -2.91 -0.02 3.02 16 17 C 0.03 1.40 5.42 84.65 0.46 1.86 16 18 N -0.91 -49.90 12.72 21.44 0.27 -49.62 16 19 Si 0.95 41.03 29.54 68.60 2.03 43.06 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 23 C -0.18 -6.79 9.93 30.62 0.30 -6.49 16 24 C -0.15 -6.79 9.25 30.62 0.28 -6.51 16 25 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 27 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 28 H 0.24 2.97 8.06 -2.91 -0.02 2.94 16 29 H 0.19 6.69 5.31 -3.02 -0.02 6.67 16 30 H 0.43 9.83 8.40 -92.71 -0.78 9.06 16 31 H 0.41 13.40 8.02 -92.71 -0.74 12.66 16 32 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 34 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 35 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.06 3.05 8.14 -2.38 -0.02 3.03 16 38 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -62.71 331.71 -0.03 -62.74 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.41 Total: 31.99 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 8.32 Total: 26.40 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -9.03 Total: -130.78 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.94 Total: -33.41 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -62.71 -0.03 -62.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432207575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.529 kcal (2) G-P(sol) polarization free energy of solvation -62.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds