Wall clock time and date at job start Tue Mar 31 2020 07:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00367 * 2 1 4 4 H 1.48495 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46832 * 300.00385 * 3 2 1 6 6 H 1.48501 * 109.46963 * 60.00306 * 3 2 1 7 7 C 1.37884 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99665 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46646 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99840 * 179.97438 * 10 9 7 12 12 O 1.21582 * 119.99695 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99583 * 180.02562 * 13 11 10 15 15 H 1.08994 * 112.85154 * 336.19420 * 14 13 11 16 16 C 1.53779 * 113.69134 * 107.46310 * 14 13 11 17 17 C 1.53785 * 87.08093 * 89.12362 * 16 14 13 18 18 H 1.09002 * 113.61570 * 270.88522 * 17 16 14 19 19 C 1.50701 * 113.69000 * 139.98979 * 17 16 14 20 20 C 1.38217 * 120.01407 * 320.93728 * 19 17 16 21 21 C 1.38223 * 120.02485 * 179.97438 * 20 19 17 22 22 C 1.38268 * 120.05516 * 0.02562 * 21 20 19 23 23 C 1.38182 * 120.01926 * 0.02562 * 22 21 20 24 24 C 1.38439 * 120.01037 * 140.65853 * 19 17 16 25 25 F 1.35103 * 120.02645 * 0.02562 * 24 19 17 26 26 C 1.53781 * 87.08241 * 25.43228 * 17 16 14 27 27 H 0.97006 * 120.00022 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47512 * 60.00229 * 9 7 2 29 29 H 1.08993 * 109.47166 * 299.99516 * 9 7 2 30 30 H 0.97005 * 120.00544 * 359.97438 * 10 9 7 31 31 H 0.96999 * 120.00116 * 359.97438 * 13 11 10 32 32 H 1.09003 * 113.61775 * 334.58239 * 16 14 13 33 33 H 1.08996 * 113.61960 * 203.66965 * 16 14 13 34 34 H 1.07997 * 119.98900 * 359.97438 * 20 19 17 35 35 H 1.08004 * 119.97478 * 180.02562 * 21 20 19 36 36 H 1.07994 * 119.98905 * 179.97438 * 22 21 20 37 37 H 1.08007 * 120.00648 * 179.97438 * 23 22 21 38 38 H 1.09005 * 113.61302 * 89.11252 * 26 17 16 39 39 H 1.08996 * 113.61527 * 219.93415 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0015 12 8 0.5582 -5.1055 -0.0006 13 7 2.6294 -5.9078 -0.0021 14 6 2.1410 -7.2890 -0.0023 15 1 1.1337 -7.3818 0.4034 16 6 2.3329 -8.0121 -1.3459 17 6 3.7143 -8.4444 -0.8263 18 1 4.5083 -7.7328 -1.0527 19 6 4.0793 -9.8621 -1.1841 20 6 3.1172 -10.8538 -1.1482 21 6 3.4516 -12.1541 -1.4769 22 6 4.7487 -12.4644 -1.8415 23 6 5.7124 -11.4748 -1.8771 24 6 5.3770 -10.1705 -1.5546 25 9 6.3171 -9.2010 -1.5950 26 6 3.1399 -8.2957 0.5925 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 3.1566 -3.4355 -0.0028 31 1 3.5831 -5.7306 -0.0031 32 1 2.3797 -7.3384 -2.2016 33 1 1.6438 -8.8428 -1.4971 34 1 2.1038 -10.6127 -0.8632 35 1 2.6991 -12.9283 -1.4490 36 1 5.0089 -13.4808 -2.0977 37 1 6.7257 -11.7175 -2.1615 38 1 2.6712 -9.2040 0.9713 39 1 3.8385 -7.8523 1.3021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438320410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:12 Heat of formation + Delta-G solvation = -37.087072 kcal Electronic energy + Delta-G solvation = -22097.257419 eV Core-core repulsion = 18533.607027 eV Total energy + Delta-G solvation = -3563.650393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.12075 -40.46169 -39.09591 -37.79192 -34.12018 -33.20124 -32.21494 -30.92504 -30.70702 -27.13571 -25.82458 -25.32013 -23.21904 -22.63540 -21.78475 -20.35933 -19.11999 -18.32341 -17.85194 -16.69105 -16.28131 -16.05727 -15.84605 -15.72283 -14.83935 -14.78716 -14.51421 -14.32666 -14.19645 -13.51266 -13.38320 -13.12089 -13.03579 -12.63444 -12.34021 -12.30596 -11.95463 -11.77008 -11.66145 -11.09099 -10.92368 -10.90558 -10.76245 -10.33785 -10.25636 -9.40010 -9.33263 -9.25176 -8.90008 -8.75278 -8.66081 -7.74948 -6.13767 -4.20032 0.83890 0.87566 3.23794 3.25395 3.29125 3.33678 3.38565 3.91241 3.97168 4.26830 4.33783 4.37639 4.54126 4.60683 4.66257 4.85739 4.92349 4.98875 5.01421 5.14883 5.22473 5.52411 5.55877 5.59532 5.67150 5.75394 5.81573 5.90983 5.96802 6.06571 6.08977 6.20919 6.57561 6.94041 7.14748 7.53535 7.57699 7.59299 7.92889 8.06472 8.78728 8.96363 9.35272 9.50069 10.96541 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.034342 B = 0.002571 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.126907 B =10886.558920 C =11494.825910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.695 3.305 12 O -0.600 6.600 13 N -0.739 5.739 14 C 0.147 3.853 15 H 0.104 0.896 16 C -0.145 4.145 17 C -0.079 4.079 18 H 0.101 0.899 19 C -0.097 4.097 20 C -0.089 4.089 21 C -0.128 4.128 22 C -0.099 4.099 23 C -0.154 4.154 24 C 0.098 3.902 25 F -0.138 7.138 26 C -0.136 4.136 27 H 0.265 0.735 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.386 0.614 31 H 0.392 0.608 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.963 -25.227 -2.324 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.394 3.606 12 O -0.479 6.479 13 N -0.395 5.395 14 C 0.040 3.960 15 H 0.122 0.878 16 C -0.184 4.184 17 C -0.097 4.097 18 H 0.119 0.881 19 C -0.098 4.098 20 C -0.107 4.107 21 C -0.146 4.146 22 C -0.118 4.118 23 C -0.173 4.173 24 C 0.079 3.921 25 F -0.117 7.117 26 C -0.174 4.174 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.218 0.782 31 H 0.225 0.775 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.113 0.887 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.685 -25.186 -2.317 27.083 hybrid contribution 1.630 1.193 -0.120 2.023 sum 11.315 -23.993 -2.436 26.639 Atomic orbital electron populations 1.69990 1.06080 1.27130 1.49092 1.24951 0.94919 0.99412 0.94807 0.86359 0.79808 0.82994 0.77720 1.19677 1.20821 1.20815 1.21268 0.93301 0.90437 1.52909 0.91908 1.18984 0.87782 0.81072 0.97614 1.45729 1.10810 1.04415 1.77159 1.16141 0.85200 0.81040 0.78181 1.90864 1.14212 1.84172 1.58623 1.44856 1.08681 1.04320 1.81654 1.21458 0.98843 0.80211 0.95525 0.87793 1.23610 0.95045 1.00544 0.99210 1.21589 0.98459 0.92053 0.97596 0.88113 1.19875 0.91927 0.96918 1.01082 1.20976 0.99340 0.91987 0.98424 1.21220 0.96670 0.96661 1.00086 1.21000 0.92803 0.99058 0.98891 1.21154 1.01152 0.91522 1.03475 1.17619 0.86181 0.85745 1.02534 1.91493 1.63905 1.62158 1.94109 1.23446 0.98726 0.99783 0.95445 0.92533 0.95737 0.95722 0.78155 0.77500 0.90551 0.89045 0.84731 0.85345 0.85216 0.84924 0.88684 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.22 5.43 -5.20 -0.03 7.19 16 10 N -0.73 -15.79 5.55 -66.42 -0.37 -16.16 16 11 C 0.69 14.42 8.57 -86.91 -0.74 13.67 16 12 O -0.60 -15.03 15.94 5.29 0.08 -14.94 16 13 N -0.74 -11.03 5.27 -57.88 -0.31 -11.34 16 14 C 0.15 1.87 4.32 -67.11 -0.29 1.58 16 15 H 0.10 1.51 7.46 -51.93 -0.39 1.12 16 16 C -0.15 -1.59 7.26 -25.92 -0.19 -1.78 16 17 C -0.08 -0.77 3.79 -90.96 -0.34 -1.12 16 18 H 0.10 1.05 7.43 -51.93 -0.39 0.67 16 19 C -0.10 -0.92 5.30 -104.56 -0.55 -1.47 16 20 C -0.09 -0.70 8.54 -39.59 -0.34 -1.04 16 21 C -0.13 -0.86 10.04 -39.58 -0.40 -1.26 16 22 C -0.10 -0.66 10.04 -39.59 -0.40 -1.06 16 23 C -0.15 -1.24 10.03 -39.51 -0.40 -1.64 16 24 C 0.10 0.98 7.25 -39.42 -0.29 0.70 16 25 F -0.14 -1.55 16.35 2.25 0.04 -1.52 16 26 C -0.14 -1.29 7.29 -25.92 -0.19 -1.48 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.39 7.16 8.34 -40.82 -0.34 6.82 16 31 H 0.39 4.79 8.72 -40.82 -0.36 4.43 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.85 6.40 -51.93 -0.33 0.52 16 34 H 0.13 0.88 6.73 -52.49 -0.35 0.52 16 35 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 36 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.09 0.77 7.64 -51.93 -0.40 0.37 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -33.44 335.21 -9.40 -42.84 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.04 Total: 6.88 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -4.57 Total: -1.24 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.06 Total: -53.10 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.94 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.44 -9.40 -42.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438320410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.758 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds