Wall clock time and date at job start Tue Mar 31 2020 07:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00367 * 2 1 4 4 H 1.48495 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46832 * 300.00385 * 3 2 1 6 6 H 1.48501 * 109.46963 * 60.00306 * 3 2 1 7 7 C 1.37884 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99665 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46646 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99840 * 179.97438 * 10 9 7 12 12 O 1.21582 * 119.99695 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99583 * 180.02562 * 13 11 10 15 15 H 1.08994 * 112.85154 * 336.19420 * 14 13 11 16 16 C 1.53779 * 113.69134 * 107.46310 * 14 13 11 17 17 C 1.53785 * 87.08093 * 89.12362 * 16 14 13 18 18 H 1.09002 * 113.61570 * 270.88522 * 17 16 14 19 19 C 1.50701 * 113.69000 * 139.98979 * 17 16 14 20 20 C 1.38217 * 120.01407 * 320.93728 * 19 17 16 21 21 C 1.38223 * 120.02485 * 179.97438 * 20 19 17 22 22 C 1.38268 * 120.05516 * 0.02562 * 21 20 19 23 23 C 1.38182 * 120.01926 * 0.02562 * 22 21 20 24 24 C 1.38439 * 120.01037 * 140.65853 * 19 17 16 25 25 F 1.35103 * 120.02645 * 0.02562 * 24 19 17 26 26 C 1.53781 * 87.08241 * 25.43228 * 17 16 14 27 27 H 0.97006 * 120.00022 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47512 * 60.00229 * 9 7 2 29 29 H 1.08993 * 109.47166 * 299.99516 * 9 7 2 30 30 H 0.97005 * 120.00544 * 359.97438 * 10 9 7 31 31 H 0.96999 * 120.00116 * 359.97438 * 13 11 10 32 32 H 1.09003 * 113.61775 * 334.58239 * 16 14 13 33 33 H 1.08996 * 113.61960 * 203.66965 * 16 14 13 34 34 H 1.07997 * 119.98900 * 359.97438 * 20 19 17 35 35 H 1.08004 * 119.97478 * 180.02562 * 21 20 19 36 36 H 1.07994 * 119.98905 * 179.97438 * 22 21 20 37 37 H 1.08007 * 120.00648 * 179.97438 * 23 22 21 38 38 H 1.09005 * 113.61302 * 89.11252 * 26 17 16 39 39 H 1.08996 * 113.61527 * 219.93415 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0015 12 8 0.5582 -5.1055 -0.0006 13 7 2.6294 -5.9078 -0.0021 14 6 2.1410 -7.2890 -0.0023 15 1 1.1337 -7.3818 0.4034 16 6 2.3329 -8.0121 -1.3459 17 6 3.7143 -8.4444 -0.8263 18 1 4.5083 -7.7328 -1.0527 19 6 4.0793 -9.8621 -1.1841 20 6 3.1172 -10.8538 -1.1482 21 6 3.4516 -12.1541 -1.4769 22 6 4.7487 -12.4644 -1.8415 23 6 5.7124 -11.4748 -1.8771 24 6 5.3770 -10.1705 -1.5546 25 9 6.3171 -9.2010 -1.5950 26 6 3.1399 -8.2957 0.5925 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 3.1566 -3.4355 -0.0028 31 1 3.5831 -5.7306 -0.0031 32 1 2.3797 -7.3384 -2.2016 33 1 1.6438 -8.8428 -1.4971 34 1 2.1038 -10.6127 -0.8632 35 1 2.6991 -12.9283 -1.4490 36 1 5.0089 -13.4808 -2.0977 37 1 6.7257 -11.7175 -2.1615 38 1 2.6712 -9.2040 0.9713 39 1 3.8385 -7.8523 1.3021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438320410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:12 Heat of formation + Delta-G solvation = -59.164428 kcal Electronic energy + Delta-G solvation = -22098.214765 eV Core-core repulsion = 18533.607027 eV Total energy + Delta-G solvation = -3564.607739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.86798 -41.51113 -40.31531 -38.79668 -36.11263 -34.68614 -34.03944 -31.72319 -31.35972 -29.13546 -26.68641 -26.25176 -24.74655 -23.67627 -22.62418 -22.01300 -20.11429 -19.92544 -18.65984 -18.02949 -17.40957 -17.27174 -16.88247 -16.60097 -16.48211 -16.34587 -15.71419 -15.33916 -15.01079 -14.88394 -14.61472 -14.26025 -14.03505 -14.02229 -13.77650 -13.41851 -12.99906 -12.96335 -12.84312 -12.74394 -12.31139 -12.21827 -11.86243 -11.70781 -11.44925 -11.24411 -11.17604 -10.81459 -10.21931 -9.83648 -9.59364 -9.51544 -8.28458 -6.44627 0.23357 0.30095 1.43360 1.44902 1.58061 1.86632 2.22696 2.39482 2.66004 3.06499 3.32798 3.47900 3.50117 3.66321 3.74793 3.89020 3.98993 4.13920 4.22595 4.42132 4.43940 4.66485 4.76171 4.84558 4.92901 5.01702 5.04142 5.07751 5.16260 5.20315 5.27605 5.30309 5.48162 5.49549 5.53709 5.65131 5.74216 5.85536 6.00758 6.26536 6.67322 7.24475 7.31135 7.72750 8.84141 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.034342 B = 0.002571 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.126907 B =10886.558920 C =11494.825910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.693 3.307 12 O -0.646 6.646 13 N -0.716 5.716 14 C 0.128 3.872 15 H 0.084 0.916 16 C -0.139 4.139 17 C -0.070 4.070 18 H 0.092 0.908 19 C -0.111 4.111 20 C -0.096 4.096 21 C -0.125 4.125 22 C -0.097 4.097 23 C -0.161 4.161 24 C 0.070 3.930 25 F -0.153 7.153 26 C -0.116 4.116 27 H 0.269 0.731 28 H -0.015 1.015 29 H -0.014 1.014 30 H 0.404 0.596 31 H 0.408 0.592 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.116 0.884 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.948 -26.747 -2.331 29.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.378 5.378 11 C 0.393 3.607 12 O -0.529 6.529 13 N -0.372 5.372 14 C 0.022 3.978 15 H 0.102 0.898 16 C -0.178 4.178 17 C -0.088 4.088 18 H 0.110 0.890 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.143 4.143 22 C -0.114 4.114 23 C -0.179 4.179 24 C 0.051 3.949 25 F -0.132 7.132 26 C -0.154 4.154 27 H 0.078 0.922 28 H 0.003 0.997 29 H 0.004 0.996 30 H 0.239 0.761 31 H 0.245 0.755 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.165 0.835 35 H 0.173 0.827 36 H 0.176 0.824 37 H 0.163 0.837 38 H 0.134 0.866 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.752 -26.767 -2.325 29.326 hybrid contribution 0.977 1.499 -0.141 1.795 sum 12.729 -25.268 -2.466 28.401 Atomic orbital electron populations 1.70147 1.08235 1.28502 1.50002 1.26069 0.95810 1.03867 0.93910 0.85090 0.78991 0.77272 0.77708 1.17773 1.20427 1.20362 1.21626 0.94271 0.90499 1.52785 0.89935 1.18410 0.88089 0.83312 0.93980 1.45324 1.10893 1.03892 1.77677 1.16289 0.85141 0.81545 0.77699 1.90829 1.16614 1.84872 1.60579 1.44630 1.08750 1.04062 1.79764 1.21745 0.98966 0.79355 0.97740 0.89765 1.23593 0.96500 1.00448 0.97229 1.21428 0.97315 0.92649 0.97409 0.88981 1.19866 0.92285 0.96755 1.02267 1.21197 0.99553 0.92253 0.98332 1.21588 0.97358 0.96761 0.98629 1.21383 0.92441 1.00010 0.97596 1.21412 1.02308 0.91058 1.03153 1.17950 0.86330 0.86360 1.04224 1.91448 1.64451 1.62854 1.94427 1.23386 0.97436 0.99135 0.95459 0.92223 0.99666 0.99563 0.76086 0.75546 0.92424 0.87128 0.83492 0.82743 0.82438 0.83728 0.86578 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.99 42.88 29.54 68.60 2.03 44.91 16 4 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -30.70 9.28 25.60 0.24 -30.46 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.29 16.14 5.43 85.63 0.46 16.60 16 10 N -0.72 -32.08 5.55 -482.30 -2.68 -34.76 16 11 C 0.69 29.58 8.57 179.05 1.53 31.12 16 12 O -0.65 -33.88 15.94 -3.97 -0.06 -33.95 16 13 N -0.72 -21.35 5.27 -455.28 -2.40 -23.75 16 14 C 0.13 3.21 4.32 45.52 0.20 3.41 16 15 H 0.08 2.49 7.46 -2.39 -0.02 2.47 16 16 C -0.14 -2.96 7.26 31.12 0.23 -2.73 16 17 C -0.07 -1.30 3.79 -11.01 -0.04 -1.34 16 18 H 0.09 1.87 7.43 -2.39 -0.02 1.85 16 19 C -0.11 -1.93 5.30 -19.82 -0.10 -2.04 16 20 C -0.10 -1.26 8.54 22.26 0.19 -1.07 16 21 C -0.13 -1.28 10.04 22.27 0.22 -1.05 16 22 C -0.10 -0.99 10.04 22.26 0.22 -0.76 16 23 C -0.16 -2.29 10.03 22.31 0.22 -2.06 16 24 C 0.07 1.33 7.25 22.38 0.16 1.49 16 25 F -0.15 -3.41 16.35 44.97 0.74 -2.68 16 26 C -0.12 -2.02 7.29 31.12 0.23 -1.80 16 27 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 28 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 30 H 0.40 14.83 8.34 -92.70 -0.77 14.06 16 31 H 0.41 9.61 8.72 -92.71 -0.81 8.80 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 1.91 6.40 -2.39 -0.02 1.90 16 34 H 0.15 1.50 6.73 -2.91 -0.02 1.48 16 35 H 0.15 0.75 8.06 -2.91 -0.02 0.72 16 36 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.12 1.58 7.64 -2.38 -0.02 1.56 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -75.61 335.21 1.64 -73.97 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -0.49 Total: 22.80 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 4.22 Total: 9.94 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -4.79 Total: -114.99 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.06 Total: -33.95 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.74 Total: -2.68 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -75.61 1.64 -73.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438320410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.804 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds