Wall clock time and date at job start Tue Mar 31 2020 07:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46948 * 300.00131 * 3 2 1 6 6 H 1.48500 * 109.47115 * 59.99966 * 3 2 1 7 7 C 1.37876 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47658 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47040 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99360 * 179.97438 * 11 10 9 13 13 O 1.21582 * 120.00451 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99760 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00387 * 179.97438 * 14 12 11 16 16 H 1.09002 * 115.56071 * 9.31146 * 15 14 12 17 17 C 1.52997 * 117.50268 * 223.62595 * 15 14 12 18 18 C 1.53001 * 117.50225 * 155.00007 * 15 14 12 19 19 H 1.09000 * 117.51662 * 0.02562 * 18 15 14 20 20 C 1.50701 * 117.50031 * 214.98190 * 18 15 14 21 21 C 1.38218 * 120.01214 * 299.96572 * 20 18 15 22 22 C 1.38225 * 120.02313 * 180.02562 * 21 20 18 23 23 C 1.38270 * 120.05340 * 359.97438 * 22 21 20 24 24 C 1.38175 * 120.02272 * 359.97438 * 23 22 21 25 25 C 1.38436 * 120.01380 * 119.98524 * 20 18 15 26 26 F 1.35106 * 120.02572 * 359.95685 * 25 20 18 27 27 H 0.96999 * 120.00397 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47177 * 59.99458 * 9 7 2 29 29 H 1.09004 * 109.46922 * 299.99987 * 9 7 2 30 30 H 1.08996 * 109.46998 * 59.99666 * 10 9 7 31 31 H 1.09004 * 109.46754 * 299.99857 * 10 9 7 32 32 H 0.96998 * 120.00032 * 359.97438 * 11 10 9 33 33 H 0.97004 * 120.00066 * 359.97438 * 14 12 11 34 34 H 1.09000 * 117.50333 * 145.01918 * 17 15 14 35 35 H 1.09001 * 117.50085 * 359.97438 * 17 15 14 36 36 H 1.08000 * 119.98639 * 0.02562 * 21 20 18 37 37 H 1.08003 * 119.97189 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.98207 * 180.27551 * 23 22 21 39 39 H 1.08007 * 120.00907 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0016 13 8 3.4026 -6.0980 0.0020 14 7 1.5130 -7.2652 0.0016 15 6 2.2454 -8.5339 0.0015 16 1 3.3209 -8.4561 0.1605 17 6 1.7479 -9.6368 -0.9349 18 6 1.5335 -9.7608 0.5749 19 1 0.5199 -9.6244 0.9520 20 6 2.3729 -10.7690 1.3165 21 6 3.4130 -11.4110 0.6712 22 6 4.1827 -12.3362 1.3510 23 6 3.9136 -12.6202 2.6772 24 6 2.8750 -11.9788 3.3246 25 6 2.1022 -11.0528 2.6442 26 9 1.0861 -10.4255 3.2761 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8713 -3.6039 0.8922 31 1 2.8727 -3.6047 -0.8878 32 1 0.5428 -4.9308 0.0005 33 1 0.5429 -7.2652 0.0016 34 1 2.4960 -10.2846 -1.3919 35 1 0.8752 -9.4187 -1.5506 36 1 3.6243 -11.1897 -0.3645 37 1 4.9955 -12.8371 0.8461 38 1 4.5185 -13.3400 3.2085 39 1 2.6647 -12.2011 4.3604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458649521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:30 Heat of formation + Delta-G solvation = -34.714353 kcal Electronic energy + Delta-G solvation = -21700.543677 eV Core-core repulsion = 18136.996173 eV Total energy + Delta-G solvation = -3563.547504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.09694 -40.12708 -39.29971 -37.31425 -34.79209 -33.29879 -32.66153 -30.87972 -30.59222 -29.24976 -24.85822 -24.46536 -22.91212 -22.27740 -20.99397 -20.82471 -20.58338 -18.35461 -17.78757 -16.94740 -16.39536 -16.14948 -16.01587 -15.74156 -15.12445 -14.64259 -14.50330 -14.44656 -14.37571 -13.50567 -13.45184 -13.30955 -12.99883 -12.78632 -12.37872 -12.26730 -11.78765 -11.57867 -11.45455 -11.17629 -11.03603 -10.81719 -10.60857 -10.32030 -9.97995 -9.57209 -9.34825 -9.24049 -9.07838 -8.66853 -8.45841 -8.22389 -6.08618 -4.11127 0.79923 0.86828 2.85836 3.13139 3.29298 3.36889 3.42354 3.44551 3.82725 3.99897 4.25746 4.37444 4.40152 4.51598 4.61264 4.62886 4.71846 4.85694 4.98049 5.02465 5.28656 5.43249 5.51367 5.68070 5.72914 5.73277 5.83773 6.03043 6.08407 6.29350 6.39974 6.54560 6.56895 6.77739 6.97494 7.19505 7.57154 7.63788 7.90661 8.25561 8.39865 8.91947 8.97139 9.53670 11.03131 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031698 B = 0.002348 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.130010 B =11923.332092 C =12027.154920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.736 5.736 12 C 0.702 3.298 13 O -0.595 6.595 14 N -0.724 5.724 15 C 0.131 3.869 16 H 0.141 0.859 17 C -0.184 4.184 18 C -0.136 4.136 19 H 0.118 0.882 20 C -0.079 4.079 21 C -0.093 4.093 22 C -0.126 4.126 23 C -0.098 4.098 24 C -0.152 4.152 25 C 0.104 3.896 26 F -0.136 7.136 27 H 0.261 0.739 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.394 0.606 33 H 0.397 0.603 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.539 -27.588 2.046 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.390 5.390 12 C 0.402 3.598 13 O -0.473 6.473 14 N -0.377 5.377 15 C 0.023 3.977 16 H 0.158 0.842 17 C -0.223 4.223 18 C -0.156 4.156 19 H 0.136 0.864 20 C -0.080 4.080 21 C -0.111 4.111 22 C -0.144 4.144 23 C -0.116 4.116 24 C -0.171 4.171 25 C 0.085 3.915 26 F -0.115 7.115 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.227 0.773 33 H 0.231 0.769 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.497 -27.339 2.074 27.639 hybrid contribution -0.882 0.970 0.209 1.327 sum 2.615 -26.369 2.283 26.596 Atomic orbital electron populations 1.69962 1.06096 1.26752 1.50550 1.25001 0.94900 0.99439 0.95028 0.86451 0.80185 0.83311 0.77590 1.19557 1.20949 1.20951 1.21089 0.93317 0.90322 1.51106 0.92142 1.19336 0.94265 0.91086 0.97837 1.21619 0.95662 0.80268 1.00741 1.45537 1.09920 1.05243 1.78254 1.15992 0.85633 0.80331 0.77808 1.90884 1.11707 1.86516 1.58223 1.44524 1.09068 1.03707 1.80439 1.21476 0.97058 0.78362 1.00838 0.84181 1.23687 1.04453 1.02699 0.91441 1.21487 1.00223 0.98175 0.95671 0.86359 1.19131 0.97888 0.98636 0.92335 1.21007 0.93962 0.95662 1.00473 1.21205 1.00025 0.98445 0.94770 1.21021 0.96593 0.99166 0.94788 1.21157 0.97059 0.97859 1.01047 1.17518 0.88132 0.95221 0.90616 1.91505 1.57217 1.80830 1.81938 0.92917 0.95942 0.95949 0.92694 0.92680 0.77305 0.76933 0.87512 0.87760 0.84696 0.85218 0.85064 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 10 C 0.14 3.04 5.61 -4.04 -0.02 3.01 16 11 N -0.74 -13.17 5.56 -65.23 -0.36 -13.54 16 12 C 0.70 12.49 8.57 -86.92 -0.74 11.75 16 13 O -0.59 -12.91 15.91 5.29 0.08 -12.83 16 14 N -0.72 -9.44 5.57 -58.68 -0.33 -9.76 16 15 C 0.13 1.52 6.07 -67.93 -0.41 1.11 16 16 H 0.14 1.90 7.40 -51.93 -0.38 1.51 16 17 C -0.18 -1.55 9.79 -26.73 -0.26 -1.81 16 18 C -0.14 -1.31 5.72 -91.77 -0.52 -1.84 16 19 H 0.12 1.12 7.87 -51.93 -0.41 0.72 16 20 C -0.08 -0.78 5.62 -104.56 -0.59 -1.36 16 21 C -0.09 -0.75 9.30 -39.59 -0.37 -1.12 16 22 C -0.13 -0.88 10.04 -39.57 -0.40 -1.28 16 23 C -0.10 -0.68 10.04 -39.59 -0.40 -1.08 16 24 C -0.15 -1.29 10.03 -39.52 -0.40 -1.68 16 25 C 0.10 1.10 7.25 -39.42 -0.29 0.81 16 26 F -0.14 -1.62 16.61 2.25 0.04 -1.58 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.39 6.02 8.49 -40.82 -0.35 5.67 16 33 H 0.40 4.03 8.84 -40.82 -0.36 3.67 16 34 H 0.11 0.74 6.18 -51.93 -0.32 0.42 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.14 0.87 6.02 -52.49 -0.32 0.55 16 37 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -33.31 341.21 -9.72 -43.03 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.06 Total: 5.20 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -4.95 Total: -6.62 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.05 Total: -48.82 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.31 -9.72 -43.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458649521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.319 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds