Wall clock time and date at job start Tue Mar 31 2020 07:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46948 * 300.00131 * 3 2 1 6 6 H 1.48500 * 109.47115 * 59.99966 * 3 2 1 7 7 C 1.37876 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47658 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47040 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99360 * 179.97438 * 11 10 9 13 13 O 1.21582 * 120.00451 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99760 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00387 * 179.97438 * 14 12 11 16 16 H 1.09002 * 115.56071 * 9.31146 * 15 14 12 17 17 C 1.52997 * 117.50268 * 223.62595 * 15 14 12 18 18 C 1.53001 * 117.50225 * 155.00007 * 15 14 12 19 19 H 1.09000 * 117.51662 * 0.02562 * 18 15 14 20 20 C 1.50701 * 117.50031 * 214.98190 * 18 15 14 21 21 C 1.38218 * 120.01214 * 299.96572 * 20 18 15 22 22 C 1.38225 * 120.02313 * 180.02562 * 21 20 18 23 23 C 1.38270 * 120.05340 * 359.97438 * 22 21 20 24 24 C 1.38175 * 120.02272 * 359.97438 * 23 22 21 25 25 C 1.38436 * 120.01380 * 119.98524 * 20 18 15 26 26 F 1.35106 * 120.02572 * 359.95685 * 25 20 18 27 27 H 0.96999 * 120.00397 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47177 * 59.99458 * 9 7 2 29 29 H 1.09004 * 109.46922 * 299.99987 * 9 7 2 30 30 H 1.08996 * 109.46998 * 59.99666 * 10 9 7 31 31 H 1.09004 * 109.46754 * 299.99857 * 10 9 7 32 32 H 0.96998 * 120.00032 * 359.97438 * 11 10 9 33 33 H 0.97004 * 120.00066 * 359.97438 * 14 12 11 34 34 H 1.09000 * 117.50333 * 145.01918 * 17 15 14 35 35 H 1.09001 * 117.50085 * 359.97438 * 17 15 14 36 36 H 1.08000 * 119.98639 * 0.02562 * 21 20 18 37 37 H 1.08003 * 119.97189 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.98207 * 180.27551 * 23 22 21 39 39 H 1.08007 * 120.00907 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0016 13 8 3.4026 -6.0980 0.0020 14 7 1.5130 -7.2652 0.0016 15 6 2.2454 -8.5339 0.0015 16 1 3.3209 -8.4561 0.1605 17 6 1.7479 -9.6368 -0.9349 18 6 1.5335 -9.7608 0.5749 19 1 0.5199 -9.6244 0.9520 20 6 2.3729 -10.7690 1.3165 21 6 3.4130 -11.4110 0.6712 22 6 4.1827 -12.3362 1.3510 23 6 3.9136 -12.6202 2.6772 24 6 2.8750 -11.9788 3.3246 25 6 2.1022 -11.0528 2.6442 26 9 1.0861 -10.4255 3.2761 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8713 -3.6039 0.8922 31 1 2.8727 -3.6047 -0.8878 32 1 0.5428 -4.9308 0.0005 33 1 0.5429 -7.2652 0.0016 34 1 2.4960 -10.2846 -1.3919 35 1 0.8752 -9.4187 -1.5506 36 1 3.6243 -11.1897 -0.3645 37 1 4.9955 -12.8371 0.8461 38 1 4.5185 -13.3400 3.2085 39 1 2.6647 -12.2011 4.3604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458649521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:29 Heat of formation + Delta-G solvation = -55.932666 kcal Electronic energy + Delta-G solvation = -21701.463772 eV Core-core repulsion = 18136.996173 eV Total energy + Delta-G solvation = -3564.467599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.89969 -41.22820 -40.24782 -38.20888 -36.53878 -34.90190 -34.19817 -31.70158 -31.40672 -30.83153 -26.77315 -25.13637 -23.82160 -23.29085 -22.64368 -21.95429 -21.52960 -19.59920 -18.67177 -18.42104 -17.79911 -17.08384 -16.80177 -16.64192 -16.59048 -16.47322 -15.76859 -15.40116 -15.14329 -15.01757 -14.88574 -14.30063 -14.19688 -13.81734 -13.46027 -13.21161 -13.03455 -12.97223 -12.59495 -12.51561 -12.33454 -12.21255 -12.12208 -11.69727 -11.55543 -11.50506 -11.23158 -10.61332 -10.30447 -9.94144 -9.74073 -9.31480 -8.24281 -6.34456 0.15411 0.25339 1.41361 1.42032 1.55043 1.64580 2.03391 2.41146 2.56144 3.00672 3.10641 3.25803 3.32159 3.58103 3.68039 3.78181 3.97451 4.09064 4.19588 4.38318 4.43322 4.45673 4.51522 4.69478 4.85454 4.89291 4.92084 5.06101 5.12156 5.23861 5.29653 5.41778 5.47334 5.49692 5.52966 5.58927 5.78352 5.95935 5.99724 6.16843 6.78916 7.07134 7.34886 7.54321 8.87918 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031698 B = 0.002348 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.130010 B =11923.332092 C =12027.154920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.732 5.732 12 C 0.702 3.298 13 O -0.637 6.637 14 N -0.705 5.705 15 C 0.098 3.902 16 H 0.118 0.882 17 C -0.154 4.154 18 C -0.126 4.126 19 H 0.117 0.883 20 C -0.098 4.098 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.095 4.095 24 C -0.161 4.161 25 C 0.072 3.928 26 F -0.153 7.153 27 H 0.266 0.734 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.407 0.593 33 H 0.412 0.588 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -29.067 1.516 29.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.386 5.386 12 C 0.402 3.598 13 O -0.519 6.519 14 N -0.359 5.359 15 C -0.009 4.009 16 H 0.136 0.864 17 C -0.193 4.193 18 C -0.146 4.146 19 H 0.135 0.865 20 C -0.099 4.099 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.113 4.113 24 C -0.179 4.179 25 C 0.053 3.947 26 F -0.132 7.132 27 H 0.075 0.925 28 H 0.028 0.972 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.243 0.757 33 H 0.249 0.751 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.178 0.822 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.162 -28.876 1.543 29.215 hybrid contribution -1.088 1.294 0.397 1.737 sum 3.074 -27.581 1.940 27.820 Atomic orbital electron populations 1.70061 1.07541 1.27943 1.51118 1.25881 0.95817 1.03136 0.94436 0.85379 0.78968 0.78698 0.77893 1.18949 1.20148 1.20261 1.21491 0.93619 0.91865 1.51375 0.92269 1.19135 0.94234 0.91654 0.96381 1.21094 0.94639 0.80968 0.99685 1.45213 1.10440 1.04366 1.78595 1.16078 0.85149 0.81118 0.77504 1.90852 1.13663 1.87205 1.60132 1.44310 1.09808 1.02841 1.78971 1.21549 0.96187 0.78321 1.04858 0.86416 1.23804 1.04842 0.99776 0.90848 1.21449 0.99755 0.96538 0.96814 0.86456 1.19289 0.98892 0.99347 0.92385 1.21287 0.93446 0.95619 1.01357 1.21612 1.00108 0.97649 0.94853 1.21420 0.95952 0.98930 0.95008 1.21429 0.97218 0.97509 1.01775 1.17914 0.88813 0.96615 0.91373 1.91453 1.58071 1.81368 1.82291 0.92543 0.97163 0.97386 0.93907 0.93597 0.75711 0.75100 0.85534 0.86294 0.83109 0.82413 0.82185 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.55 -30.79 9.11 25.60 0.23 -30.56 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.20 5.09 29.85 0.15 1.35 16 10 C 0.16 7.12 5.61 86.38 0.48 7.60 16 11 N -0.73 -26.40 5.56 -478.54 -2.66 -29.06 16 12 C 0.70 25.14 8.57 179.05 1.53 26.67 16 13 O -0.64 -28.24 15.91 -3.98 -0.06 -28.30 16 14 N -0.71 -18.09 5.57 -457.83 -2.55 -20.64 16 15 C 0.10 2.23 6.07 44.99 0.27 2.50 16 16 H 0.12 3.26 7.40 -2.39 -0.02 3.24 16 17 C -0.15 -2.27 9.79 30.59 0.30 -1.97 16 18 C -0.13 -2.32 5.72 -11.54 -0.07 -2.39 16 19 H 0.12 2.16 7.87 -2.39 -0.02 2.14 16 20 C -0.10 -1.86 5.62 -19.82 -0.11 -1.97 16 21 C -0.10 -1.43 9.30 22.26 0.21 -1.22 16 22 C -0.12 -1.40 10.04 22.27 0.22 -1.18 16 23 C -0.10 -1.10 10.04 22.26 0.22 -0.88 16 24 C -0.16 -2.56 10.03 22.31 0.22 -2.34 16 25 C 0.07 1.51 7.25 22.37 0.16 1.67 16 26 F -0.15 -3.75 16.61 44.97 0.75 -3.00 16 27 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.41 12.40 8.49 -92.71 -0.79 11.61 16 33 H 0.41 7.96 8.84 -92.71 -0.82 7.14 16 34 H 0.13 1.37 6.18 -2.39 -0.01 1.35 16 35 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.15 1.56 6.02 -2.91 -0.02 1.54 16 37 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 38 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 39 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -72.82 341.21 1.57 -71.25 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.51 Total: 20.06 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 4.30 Total: -1.91 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -4.93 Total: -104.10 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.06 Total: -28.30 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.75 Total: -3.00 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.82 1.57 -71.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458649521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.320 kcal (2) G-P(sol) polarization free energy of solvation -72.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds