Wall clock time and date at job start Tue Mar 31 2020 06:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00230 * 2 1 4 4 H 1.48500 * 109.47236 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47634 * 300.00396 * 3 2 1 6 6 H 1.48496 * 109.47069 * 60.00601 * 3 2 1 7 7 C 1.37885 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99633 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46963 * 180.02562 * 9 7 2 11 11 C 1.34765 * 120.00179 * 179.97438 * 10 9 7 12 12 O 1.21597 * 119.99967 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00272 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99992 * 174.96701 * 13 11 10 15 15 C 1.53000 * 115.55053 * 301.15995 * 14 13 11 16 16 C 1.50701 * 109.47099 * 270.16461 * 15 14 13 17 17 C 1.38247 * 119.97544 * 86.13659 * 16 15 14 18 18 C 1.38198 * 120.02880 * 180.02562 * 17 16 15 19 19 C 1.38463 * 119.97216 * 0.22770 * 18 17 16 20 20 F 1.35094 * 120.02216 * 179.73328 * 19 18 17 21 21 C 1.38464 * 119.94778 * 359.49457 * 19 18 17 22 22 C 1.38196 * 119.97131 * 0.52858 * 21 19 18 23 23 C 1.53001 * 117.52155 * 86.86134 * 14 13 11 24 24 C 1.53003 * 60.00107 * 107.48089 * 23 14 13 25 25 H 0.96999 * 119.99432 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46941 * 60.00375 * 9 7 2 27 27 H 1.09000 * 109.47001 * 300.00480 * 9 7 2 28 28 H 0.97007 * 119.99589 * 0.02562 * 10 9 7 29 29 H 0.96996 * 119.99663 * 354.96544 * 13 11 10 30 30 H 1.08998 * 109.47229 * 150.17001 * 15 14 13 31 31 H 1.08994 * 109.47417 * 30.16237 * 15 14 13 32 32 H 1.08002 * 119.98565 * 0.02562 * 17 16 15 33 33 H 1.07998 * 120.01249 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.01098 * 180.25549 * 21 19 18 35 35 H 1.08002 * 119.98684 * 179.74130 * 22 21 19 36 36 H 1.08997 * 117.49974 * 214.97278 * 23 14 13 37 37 H 1.09004 * 117.49372 * 359.97438 * 23 14 13 38 38 H 1.08997 * 117.49773 * 252.51508 * 24 23 14 39 39 H 1.08994 * 117.51810 * 107.48072 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5582 -5.1055 0.0000 13 7 2.6295 -5.9078 -0.0005 14 6 2.1449 -7.2858 0.1113 15 6 1.3339 -7.6000 1.3701 16 6 2.2622 -8.0642 2.4628 17 6 2.8830 -7.1388 3.2811 18 6 3.7349 -7.5632 4.2831 19 6 3.9701 -8.9156 4.4644 20 9 4.8068 -9.3314 5.4401 21 6 3.3433 -9.8418 3.6479 22 6 2.4922 -9.4149 2.6463 23 6 1.7497 -8.0034 -1.1809 24 6 3.0356 -8.3958 -0.4505 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 3.1566 -3.4355 -0.0002 29 1 3.5806 -5.7327 -0.0750 30 1 0.6108 -8.3853 1.1499 31 1 0.8081 -6.7030 1.6969 32 1 2.7022 -6.0838 3.1372 33 1 4.2200 -6.8401 4.9220 34 1 3.5229 -10.8971 3.7910 35 1 2.0064 -10.1369 2.0066 36 1 0.9120 -8.6992 -1.1343 37 1 1.8499 -7.4500 -2.1147 38 1 3.9819 -8.1006 -0.9037 39 1 3.0441 -9.3496 0.0769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458714053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:01 Heat of formation + Delta-G solvation = -32.249532 kcal Electronic energy + Delta-G solvation = -22548.557171 eV Core-core repulsion = 18985.116550 eV Total energy + Delta-G solvation = -3563.440621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.02082 -40.06360 -38.92576 -37.21904 -34.07982 -32.73584 -32.01451 -31.82151 -31.24710 -27.23843 -26.76071 -23.23364 -22.97649 -22.57808 -21.83730 -20.62554 -19.41510 -18.02020 -17.76536 -16.66145 -16.22301 -15.99042 -15.72584 -15.51709 -15.05623 -14.82701 -14.28694 -14.14295 -13.93937 -13.72202 -13.47476 -13.24306 -12.89708 -12.16795 -12.05886 -11.98615 -11.96520 -11.76419 -11.50225 -11.10775 -10.93314 -10.92940 -10.68661 -10.30482 -10.15895 -9.36044 -9.31419 -9.25456 -8.90916 -8.72727 -8.46123 -7.76967 -6.16169 -4.22550 0.99418 1.08278 3.19813 3.23539 3.31381 3.34612 3.41625 3.67544 3.98851 4.12250 4.32135 4.53281 4.65563 4.68600 4.74340 4.94005 4.99937 5.05403 5.14256 5.20178 5.22572 5.53855 5.60691 5.69331 5.78784 5.87074 5.88542 5.96908 6.08369 6.10677 6.18317 6.46381 6.76000 6.94612 7.10564 7.50869 7.54960 7.56432 7.90111 8.03954 8.76292 8.94286 9.33532 9.48014 10.94061 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018169 B = 0.003413 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.750325 B = 8201.817618 C = 9234.985794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.730 5.730 11 C 0.695 3.305 12 O -0.593 6.593 13 N -0.727 5.727 14 C 0.140 3.860 15 C -0.054 4.054 16 C -0.078 4.078 17 C -0.079 4.079 18 C -0.150 4.150 19 C 0.086 3.914 20 F -0.145 7.145 21 C -0.154 4.154 22 C -0.091 4.091 23 C -0.174 4.174 24 C -0.175 4.175 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.386 0.614 29 H 0.393 0.607 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.400 -19.717 4.084 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.147 3.853 10 N -0.382 5.382 11 C 0.395 3.605 12 O -0.471 6.471 13 N -0.383 5.383 14 C 0.051 3.949 15 C -0.092 4.092 16 C -0.078 4.078 17 C -0.097 4.097 18 C -0.169 4.169 19 C 0.067 3.933 20 F -0.123 7.123 21 C -0.173 4.173 22 C -0.109 4.109 23 C -0.213 4.213 24 C -0.213 4.213 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.218 0.782 29 H 0.226 0.774 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.123 -19.730 4.141 21.381 hybrid contribution 1.549 1.089 0.120 1.897 sum 8.672 -18.641 4.260 20.996 Atomic orbital electron populations 1.69988 1.06076 1.27146 1.49039 1.24944 0.94907 0.99394 0.94782 0.86370 0.79811 0.83026 0.77741 1.19680 1.20826 1.20807 1.21267 0.93284 0.90452 1.52982 0.91940 1.18972 0.87741 0.81042 0.97575 1.45747 1.10783 1.04420 1.77256 1.16131 0.85237 0.80835 0.78338 1.90872 1.14049 1.84082 1.58119 1.44578 1.08836 1.03543 1.81304 1.20040 1.00887 0.80367 0.93647 1.20377 0.95141 1.03180 0.90504 1.19992 0.98023 0.93028 0.96752 1.21024 0.94841 1.00421 0.93421 1.21176 1.01142 0.94001 1.00555 1.17723 0.93288 0.93100 0.89158 1.91482 1.69307 1.90984 1.60559 1.21082 0.99556 0.99550 0.97078 1.20916 0.97539 0.95363 0.97100 1.23437 0.97881 1.02989 0.96960 1.23323 0.95582 0.98652 1.03710 0.92524 0.95784 0.95748 0.78236 0.77355 0.89916 0.88369 0.84890 0.84853 0.85023 0.85154 0.88327 0.88496 0.88589 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.95 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -14.57 9.28 -34.43 -0.32 -14.89 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.27 7.04 5.43 -5.19 -0.03 7.01 16 10 N -0.73 -15.13 5.55 -66.41 -0.37 -15.50 16 11 C 0.69 13.63 8.20 -86.93 -0.71 12.91 16 12 O -0.59 -14.01 15.11 5.28 0.08 -13.93 16 13 N -0.73 -10.35 5.49 -52.41 -0.29 -10.64 16 14 C 0.14 1.73 1.88 -131.82 -0.25 1.48 16 15 C -0.05 -0.66 5.31 -27.88 -0.15 -0.81 16 16 C -0.08 -0.85 4.74 -104.62 -0.50 -1.34 16 17 C -0.08 -0.91 9.71 -39.59 -0.38 -1.30 16 18 C -0.15 -1.63 10.03 -39.51 -0.40 -2.03 16 19 C 0.09 0.94 7.30 -39.42 -0.29 0.65 16 20 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 21 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 22 C -0.09 -0.83 8.59 -39.59 -0.34 -1.17 16 23 C -0.17 -1.98 10.10 -26.73 -0.27 -2.25 16 24 C -0.18 -1.64 9.71 -26.73 -0.26 -1.90 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.39 6.86 8.34 -40.82 -0.34 6.52 16 29 H 0.39 4.59 8.84 -40.82 -0.36 4.23 16 30 H 0.08 0.89 7.79 -51.93 -0.40 0.48 16 31 H 0.10 1.55 6.64 -51.93 -0.34 1.20 16 32 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.13 0.90 7.95 -52.49 -0.42 0.48 16 36 H 0.10 1.00 8.03 -51.93 -0.42 0.58 16 37 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.81 6.92 -51.93 -0.36 0.45 16 LS Contribution 340.49 15.07 5.13 5.13 Total: -1.00 -31.96 340.49 -9.21 -41.18 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.14 Total: 8.69 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -4.38 Total: -3.82 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.08 Total: -51.35 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.08 Total: -13.93 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.96 -9.21 -41.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458714053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.927 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds