Wall clock time and date at job start Tue Mar 31 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 N 1.46497 * 109.47128 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00024 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99711 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00053 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99984 * 179.97438 * 13 11 10 15 15 H 1.08996 * 112.84712 * 336.20425 * 14 13 11 16 16 C 1.53782 * 113.60866 * 107.50802 * 14 13 11 17 17 C 1.53777 * 87.08315 * 89.11806 * 16 14 13 18 18 H 1.09001 * 113.61508 * 270.88475 * 17 16 14 19 19 C 1.50698 * 113.61958 * 139.97589 * 17 16 14 20 20 C 1.38244 * 119.97271 * 322.23175 * 19 17 16 21 21 C 1.38203 * 120.02498 * 179.76039 * 20 19 17 22 22 C 1.38458 * 119.97234 * 0.51072 * 21 20 19 23 23 F 1.35099 * 120.02401 * 179.76492 * 22 21 20 24 24 C 1.38457 * 119.95024 * 359.74265 * 22 21 20 25 25 C 1.38202 * 119.97304 * 359.97438 * 24 22 21 26 26 C 1.53778 * 87.08210 * 25.43014 * 17 16 14 27 27 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 28 28 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 29 29 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 30 30 H 0.97000 * 119.99741 * 359.97438 * 10 9 7 31 31 H 0.97003 * 120.00270 * 0.02562 * 13 11 10 32 32 H 1.09000 * 113.61071 * 203.66648 * 16 14 13 33 33 H 1.09003 * 113.61805 * 334.56955 * 16 14 13 34 34 H 1.08001 * 119.99037 * 0.02562 * 20 19 17 35 35 H 1.07998 * 120.01403 * 180.24980 * 21 20 19 36 36 H 1.08000 * 120.01542 * 179.97438 * 24 22 21 37 37 H 1.08002 * 119.98509 * 179.97438 * 25 24 22 38 38 H 1.09006 * 113.61910 * 220.02116 * 26 17 16 39 39 H 1.09000 * 113.69570 * 89.12506 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 7 2.2030 -3.6127 -0.0119 11 6 1.7537 -4.8834 -0.0125 12 8 0.5582 -5.1055 -0.0075 13 7 2.6294 -5.9078 -0.0186 14 6 2.1410 -7.2891 -0.0187 15 1 1.1355 -7.3824 0.3914 16 6 2.3288 -8.0086 -1.3647 17 6 3.7120 -8.4415 -0.8510 18 1 4.5049 -7.7289 -1.0783 19 6 4.0748 -9.8583 -1.2142 20 6 3.1055 -10.8440 -1.2030 21 6 3.4360 -12.1427 -1.5408 22 6 4.7406 -12.4586 -1.8803 23 9 5.0658 -13.7287 -2.2060 24 6 5.7116 -11.4716 -1.8861 25 6 5.3776 -10.1724 -1.5537 26 6 3.1425 -8.2966 0.5701 27 1 -0.4849 0.8401 0.0041 28 1 0.6280 -2.5591 0.8866 29 1 0.6206 -2.5548 -0.8933 30 1 3.1566 -3.4354 -0.0155 31 1 3.5831 -5.7306 -0.0222 32 1 1.6394 -8.8394 -1.5156 33 1 2.3722 -7.3328 -2.2189 34 1 2.0888 -10.5982 -0.9343 35 1 2.6778 -12.9118 -1.5358 36 1 6.7297 -11.7168 -2.1504 37 1 6.1350 -9.4025 -1.5578 38 1 3.8428 -7.8532 1.2781 39 1 2.6755 -9.2054 0.9496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458724637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:14 Heat of formation + Delta-G solvation = -38.361100 kcal Electronic energy + Delta-G solvation = -21764.211801 eV Core-core repulsion = 18200.506162 eV Total energy + Delta-G solvation = -3563.705639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.17927 -40.58082 -39.12436 -37.70707 -34.13625 -33.12063 -32.18398 -31.49900 -30.43518 -27.13126 -25.84596 -25.07617 -23.46290 -22.72578 -21.73739 -20.39154 -19.18029 -18.30020 -17.97001 -16.68650 -16.24537 -16.07017 -15.88349 -15.67666 -14.90594 -14.85429 -14.57416 -14.33749 -13.87753 -13.67155 -13.42310 -13.28682 -13.05837 -12.76849 -12.63010 -12.21601 -11.97203 -11.73161 -11.50124 -11.12190 -10.93201 -10.92258 -10.73684 -10.35926 -10.27624 -9.44817 -9.42490 -9.35317 -8.83995 -8.75696 -8.67384 -7.77484 -6.15634 -4.22054 0.79987 0.89291 3.21343 3.23810 3.26729 3.32072 3.36287 3.88852 3.94648 4.28801 4.32398 4.35575 4.53484 4.55876 4.60278 4.85053 4.92889 4.93212 5.05365 5.13755 5.20589 5.48627 5.54043 5.57696 5.69862 5.76445 5.80983 5.82381 5.93003 5.95759 6.10115 6.28979 6.55975 6.91366 7.12108 7.50972 7.55347 7.57137 7.90643 8.04222 8.76527 8.93941 9.32966 9.47874 10.94642 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.045216 B = 0.002262 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.103534 B =12376.485500 C =12775.178493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.694 3.306 12 O -0.599 6.599 13 N -0.739 5.739 14 C 0.146 3.854 15 H 0.103 0.897 16 C -0.148 4.148 17 C -0.075 4.075 18 H 0.099 0.901 19 C -0.074 4.074 20 C -0.088 4.088 21 C -0.151 4.151 22 C 0.087 3.913 23 F -0.143 7.143 24 C -0.152 4.152 25 C -0.088 4.088 26 C -0.137 4.137 27 H 0.265 0.735 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.386 0.614 31 H 0.391 0.609 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.076 0.924 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.643 -22.910 -2.118 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.394 3.606 12 O -0.478 6.478 13 N -0.395 5.395 14 C 0.038 3.962 15 H 0.121 0.879 16 C -0.187 4.187 17 C -0.094 4.094 18 H 0.117 0.883 19 C -0.074 4.074 20 C -0.106 4.106 21 C -0.170 4.170 22 C 0.068 3.932 23 F -0.122 7.122 24 C -0.171 4.171 25 C -0.106 4.106 26 C -0.176 4.176 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.218 0.782 31 H 0.224 0.776 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.094 0.906 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.337 -22.964 -2.121 25.272 hybrid contribution 1.468 0.777 -0.156 1.668 sum 11.804 -22.187 -2.277 25.234 Atomic orbital electron populations 1.69992 1.06079 1.27148 1.49029 1.24957 0.94927 0.99427 0.94803 0.86356 0.79780 0.82984 0.77731 1.19686 1.20819 1.20818 1.21264 0.93290 0.90433 1.52974 0.91909 1.18986 0.87784 0.81070 0.97624 1.45725 1.10795 1.04425 1.77170 1.16146 0.85216 0.81044 0.78197 1.90871 1.14231 1.84160 1.58575 1.44848 1.08625 1.04333 1.81695 1.21484 0.98883 0.80191 0.95631 0.87902 1.23625 0.95364 1.00560 0.99138 1.21626 0.98171 0.92317 0.97237 0.88263 1.19878 0.93218 0.95596 0.98711 1.20947 1.00010 0.91397 0.98218 1.21155 0.94987 0.98149 1.02666 1.17744 0.94142 0.79203 1.02071 1.91493 1.93362 1.37010 1.90342 1.21145 0.99490 0.92977 1.03497 1.20964 0.96235 0.95577 0.97872 1.23453 0.98782 0.99745 0.95588 0.92519 0.95739 0.95721 0.78177 0.77551 0.89116 0.90569 0.84674 0.84792 0.84886 0.85005 0.90558 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.10 5.43 -5.20 -0.03 7.07 16 10 N -0.73 -15.37 5.55 -66.42 -0.37 -15.73 16 11 C 0.69 13.98 8.57 -86.92 -0.74 13.24 16 12 O -0.60 -14.77 15.94 5.29 0.08 -14.68 16 13 N -0.74 -10.36 5.27 -57.88 -0.30 -10.66 16 14 C 0.15 1.73 4.33 -67.11 -0.29 1.44 16 15 H 0.10 1.45 7.46 -51.93 -0.39 1.06 16 16 C -0.15 -1.48 7.25 -25.92 -0.19 -1.67 16 17 C -0.08 -0.61 3.86 -90.96 -0.35 -0.96 16 18 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 19 C -0.07 -0.59 5.29 -104.62 -0.55 -1.15 16 20 C -0.09 -0.68 8.60 -39.59 -0.34 -1.02 16 21 C -0.15 -1.22 10.03 -39.51 -0.40 -1.61 16 22 C 0.09 0.79 7.30 -39.42 -0.29 0.50 16 23 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 24 C -0.15 -1.21 10.03 -39.51 -0.40 -1.61 16 25 C -0.09 -0.67 9.71 -39.59 -0.38 -1.05 16 26 C -0.14 -1.16 7.29 -25.92 -0.19 -1.35 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.39 6.89 8.34 -40.82 -0.34 6.55 16 31 H 0.39 4.30 8.72 -40.82 -0.36 3.94 16 32 H 0.09 0.80 6.32 -51.93 -0.33 0.47 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.14 0.87 6.67 -52.49 -0.35 0.52 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.76 8.05 -52.49 -0.42 0.34 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.70 7.72 -51.93 -0.40 0.30 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -33.05 336.54 -9.40 -42.45 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.08 Total: 6.03 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -4.57 Total: -1.51 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.06 Total: -51.74 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.08 Total: -14.68 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.05 -9.40 -42.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458724637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.091 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds