Wall clock time and date at job start Tue Mar 31 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 N 1.46497 * 109.47128 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00024 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99711 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00053 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99984 * 179.97438 * 13 11 10 15 15 H 1.08996 * 112.84712 * 336.20425 * 14 13 11 16 16 C 1.53782 * 113.60866 * 107.50802 * 14 13 11 17 17 C 1.53777 * 87.08315 * 89.11806 * 16 14 13 18 18 H 1.09001 * 113.61508 * 270.88475 * 17 16 14 19 19 C 1.50698 * 113.61958 * 139.97589 * 17 16 14 20 20 C 1.38244 * 119.97271 * 322.23175 * 19 17 16 21 21 C 1.38203 * 120.02498 * 179.76039 * 20 19 17 22 22 C 1.38458 * 119.97234 * 0.51072 * 21 20 19 23 23 F 1.35099 * 120.02401 * 179.76492 * 22 21 20 24 24 C 1.38457 * 119.95024 * 359.74265 * 22 21 20 25 25 C 1.38202 * 119.97304 * 359.97438 * 24 22 21 26 26 C 1.53778 * 87.08210 * 25.43014 * 17 16 14 27 27 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 28 28 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 29 29 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 30 30 H 0.97000 * 119.99741 * 359.97438 * 10 9 7 31 31 H 0.97003 * 120.00270 * 0.02562 * 13 11 10 32 32 H 1.09000 * 113.61071 * 203.66648 * 16 14 13 33 33 H 1.09003 * 113.61805 * 334.56955 * 16 14 13 34 34 H 1.08001 * 119.99037 * 0.02562 * 20 19 17 35 35 H 1.07998 * 120.01403 * 180.24980 * 21 20 19 36 36 H 1.08000 * 120.01542 * 179.97438 * 24 22 21 37 37 H 1.08002 * 119.98509 * 179.97438 * 25 24 22 38 38 H 1.09006 * 113.61910 * 220.02116 * 26 17 16 39 39 H 1.09000 * 113.69570 * 89.12506 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 7 2.2030 -3.6127 -0.0119 11 6 1.7537 -4.8834 -0.0125 12 8 0.5582 -5.1055 -0.0075 13 7 2.6294 -5.9078 -0.0186 14 6 2.1410 -7.2891 -0.0187 15 1 1.1355 -7.3824 0.3914 16 6 2.3288 -8.0086 -1.3647 17 6 3.7120 -8.4415 -0.8510 18 1 4.5049 -7.7289 -1.0783 19 6 4.0748 -9.8583 -1.2142 20 6 3.1055 -10.8440 -1.2030 21 6 3.4360 -12.1427 -1.5408 22 6 4.7406 -12.4586 -1.8803 23 9 5.0658 -13.7287 -2.2060 24 6 5.7116 -11.4716 -1.8861 25 6 5.3776 -10.1724 -1.5537 26 6 3.1425 -8.2966 0.5701 27 1 -0.4849 0.8401 0.0041 28 1 0.6280 -2.5591 0.8866 29 1 0.6206 -2.5548 -0.8933 30 1 3.1566 -3.4354 -0.0155 31 1 3.5831 -5.7306 -0.0222 32 1 1.6394 -8.8394 -1.5156 33 1 2.3722 -7.3328 -2.2189 34 1 2.0888 -10.5982 -0.9343 35 1 2.6778 -12.9118 -1.5358 36 1 6.7297 -11.7168 -2.1504 37 1 6.1350 -9.4025 -1.5578 38 1 3.8428 -7.8532 1.2781 39 1 2.6755 -9.2054 0.9496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458724637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:14 Heat of formation + Delta-G solvation = -59.976837 kcal Electronic energy + Delta-G solvation = -21765.149130 eV Core-core repulsion = 18200.506162 eV Total energy + Delta-G solvation = -3564.642967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.86909 -41.52155 -40.36116 -38.67746 -36.08618 -34.62252 -33.94134 -32.07051 -31.26291 -29.08892 -26.61291 -25.98982 -24.67991 -23.96830 -22.56613 -21.98249 -20.09397 -19.89051 -18.68086 -18.04081 -17.37185 -17.22806 -16.84438 -16.57195 -16.42747 -16.30437 -15.69740 -15.42270 -14.93020 -14.77259 -14.42843 -14.31263 -14.03309 -13.93686 -13.82425 -13.57741 -13.33416 -12.86962 -12.83711 -12.72299 -12.20156 -12.12831 -11.77857 -11.59495 -11.43056 -11.21485 -11.12890 -10.80014 -10.18067 -10.01475 -9.56330 -9.41825 -8.27029 -6.43130 0.17518 0.32441 1.44836 1.46279 1.59399 1.90330 2.26505 2.40905 2.61295 3.08093 3.33807 3.52285 3.57237 3.74204 3.82919 3.88787 4.01325 4.05559 4.27069 4.39078 4.47701 4.71387 4.83312 4.90760 4.96749 5.08782 5.10888 5.12016 5.12210 5.21455 5.26730 5.29387 5.35125 5.51613 5.63132 5.69974 5.79709 5.87444 5.97548 6.31483 6.69300 7.26412 7.36247 7.77070 8.85522 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.045216 B = 0.002262 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.103534 B =12376.485500 C =12775.178493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.692 3.308 12 O -0.650 6.650 13 N -0.713 5.713 14 C 0.125 3.875 15 H 0.076 0.924 16 C -0.145 4.145 17 C -0.060 4.060 18 H 0.112 0.888 19 C -0.080 4.080 20 C -0.092 4.092 21 C -0.157 4.157 22 C 0.067 3.933 23 F -0.153 7.153 24 C -0.157 4.157 25 C -0.088 4.088 26 C -0.119 4.119 27 H 0.268 0.732 28 H -0.015 1.015 29 H -0.015 1.015 30 H 0.405 0.595 31 H 0.411 0.589 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.087 0.913 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.513 -23.012 -2.039 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.392 3.608 12 O -0.532 6.532 13 N -0.369 5.369 14 C 0.019 3.981 15 H 0.094 0.906 16 C -0.184 4.184 17 C -0.078 4.078 18 H 0.130 0.870 19 C -0.080 4.080 20 C -0.110 4.110 21 C -0.176 4.176 22 C 0.048 3.952 23 F -0.132 7.132 24 C -0.175 4.175 25 C -0.106 4.106 26 C -0.157 4.157 27 H 0.077 0.923 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.240 0.760 31 H 0.248 0.752 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.106 0.894 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.295 -23.131 -2.044 26.758 hybrid contribution 0.532 0.693 -0.191 0.895 sum 13.827 -22.438 -2.235 26.451 Atomic orbital electron populations 1.70155 1.08271 1.28462 1.50083 1.26082 0.95801 1.03916 0.93973 0.85088 0.79078 0.77266 0.77613 1.17582 1.20545 1.20506 1.21638 0.94335 0.90442 1.52636 0.89751 1.18397 0.88127 0.83405 0.93900 1.45292 1.10888 1.03848 1.77703 1.16318 0.85162 0.81606 0.77707 1.90838 1.16850 1.84903 1.60631 1.44574 1.08786 1.03859 1.79700 1.21770 0.98884 0.79484 0.98011 0.90578 1.23616 0.97304 1.00315 0.97189 1.21528 0.97187 0.92743 0.96312 0.86954 1.19915 0.93613 0.95353 0.99092 1.21115 1.00622 0.91254 0.98004 1.21334 0.95050 0.98711 1.02464 1.18041 0.94963 0.79146 1.03042 1.91465 1.93478 1.37711 1.90574 1.21367 1.00044 0.92966 1.03141 1.21207 0.96524 0.95863 0.97038 1.23389 0.97511 0.98702 0.96109 0.92282 0.99719 0.99740 0.75968 0.75226 0.87953 0.92151 0.83607 0.83749 0.83505 0.82936 0.89391 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.99 42.09 29.54 68.60 2.03 44.11 16 4 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -29.96 9.28 25.60 0.24 -29.72 16 8 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.29 15.79 5.43 85.63 0.46 16.25 16 10 N -0.72 -30.74 5.55 -482.30 -2.68 -33.42 16 11 C 0.69 28.27 8.57 179.06 1.53 29.81 16 12 O -0.65 -33.39 15.94 -4.00 -0.06 -33.45 16 13 N -0.71 -19.20 5.27 -455.29 -2.40 -21.60 16 14 C 0.12 2.84 4.33 45.52 0.20 3.04 16 15 H 0.08 2.18 7.46 -2.39 -0.02 2.16 16 16 C -0.15 -2.69 7.25 31.12 0.23 -2.47 16 17 C -0.06 -0.79 3.86 -11.02 -0.04 -0.83 16 18 H 0.11 1.24 8.09 -2.39 -0.02 1.22 16 19 C -0.08 -1.06 5.29 -19.86 -0.11 -1.16 16 20 C -0.09 -1.24 8.60 22.26 0.19 -1.05 16 21 C -0.16 -2.31 10.03 22.31 0.22 -2.08 16 22 C 0.07 1.12 7.30 22.37 0.16 1.28 16 23 F -0.15 -2.94 17.27 44.97 0.78 -2.16 16 24 C -0.16 -2.17 10.03 22.31 0.22 -1.94 16 25 C -0.09 -1.08 9.71 22.26 0.22 -0.87 16 26 C -0.12 -1.68 7.29 31.12 0.23 -1.45 16 27 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 28 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 29 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 30 H 0.40 13.93 8.34 -92.71 -0.77 13.16 16 31 H 0.41 7.98 8.72 -92.71 -0.81 7.17 16 32 H 0.10 1.65 6.32 -2.39 -0.02 1.64 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.15 1.57 6.67 -2.91 -0.02 1.56 16 35 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 36 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.15 1.18 8.05 -2.91 -0.02 1.16 16 38 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.11 1.29 7.72 -2.39 -0.02 1.28 16 Total: -1.00 -74.65 336.54 1.68 -72.98 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.49 Total: 20.10 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 4.22 Total: 9.37 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -4.79 Total: -110.95 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.06 Total: -33.45 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -74.65 1.68 -72.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458724637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.001 kcal (2) G-P(sol) polarization free energy of solvation -74.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds