Wall clock time and date at job start Tue Mar 31 2020 06:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48501 * 109.46864 * 239.99546 * 3 2 1 5 5 H 1.48496 * 109.47475 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47151 * 119.99958 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00060 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99973 * 179.97438 * 10 9 7 12 12 O 1.21588 * 120.00151 * 359.73121 * 11 10 9 13 13 N 1.34784 * 119.99935 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99893 * 179.72905 * 13 11 10 15 15 C 1.50699 * 109.46700 * 180.02562 * 14 13 11 16 16 C 1.38216 * 120.01645 * 104.72664 * 15 14 13 17 17 C 1.38222 * 120.02864 * 179.72001 * 16 15 14 18 18 C 1.50699 * 119.97585 * 180.25376 * 17 16 15 19 19 C 1.53003 * 117.49792 * 188.91651 * 18 17 16 20 20 C 1.52994 * 60.00245 * 252.51115 * 19 18 17 21 21 C 1.38274 * 120.05034 * 0.54771 * 17 16 15 22 22 C 1.38175 * 120.02022 * 359.72823 * 21 17 16 23 23 C 1.38442 * 120.01348 * 284.99541 * 15 14 13 24 24 F 1.35104 * 120.02036 * 359.97438 * 23 15 14 25 25 H 0.97003 * 120.00435 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46987 * 59.99452 * 9 7 2 27 27 H 1.08997 * 109.46849 * 300.00214 * 9 7 2 28 28 H 0.97004 * 120.00009 * 0.02562 * 10 9 7 29 29 H 0.97005 * 119.99846 * 359.72693 * 13 11 10 30 30 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 31 31 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 32 32 H 1.07999 * 119.98505 * 359.97438 * 16 15 14 33 33 H 1.08999 * 115.55353 * 334.62493 * 18 17 16 34 34 H 1.08999 * 117.49793 * 0.02562 * 19 18 17 35 35 H 1.09000 * 117.49668 * 145.01634 * 19 18 17 36 36 H 1.08998 * 117.49727 * 252.51247 * 20 19 18 37 37 H 1.09000 * 117.50266 * 107.48622 * 20 19 18 38 38 H 1.07991 * 119.98720 * 179.70022 * 21 17 16 39 39 H 1.08002 * 120.00747 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5583 -5.1055 0.0065 13 7 2.6296 -5.9078 0.0016 14 6 2.1412 -7.2890 0.0081 15 6 3.3134 -8.2361 0.0080 16 6 3.6635 -8.9031 1.1668 17 6 4.7350 -9.7763 1.1655 18 6 5.1122 -10.5072 2.4283 19 6 6.4240 -11.2948 2.4236 20 6 5.0863 -12.0366 2.3939 21 6 5.4648 -9.9751 0.0080 22 6 5.1201 -9.3051 -1.1502 23 6 4.0433 -8.4344 -1.1515 24 9 3.7050 -7.7792 -2.2836 25 1 -0.4851 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 3.1567 -3.4355 0.0009 29 1 3.5833 -5.7305 -0.0024 30 1 1.5389 -7.4571 0.9009 31 1 1.5325 -7.4634 -0.8790 32 1 3.0971 -8.7450 2.0727 33 1 4.8208 -10.0197 3.3586 34 1 7.0143 -11.2838 1.5074 35 1 6.9959 -11.3253 3.3510 36 1 4.7781 -12.5553 3.3017 37 1 4.7962 -12.5141 1.4579 38 1 6.3047 -10.6539 0.0094 39 1 5.6905 -9.4602 -2.0541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458725633.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:01 Heat of formation + Delta-G solvation = -55.583270 kcal Electronic energy + Delta-G solvation = -21965.156133 eV Core-core repulsion = 18400.703685 eV Total energy + Delta-G solvation = -3564.452448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.93938 -41.08696 -40.49008 -37.80808 -36.31192 -35.71762 -34.36361 -32.47678 -31.31735 -29.31981 -27.07274 -24.75104 -24.38365 -23.62963 -23.03601 -21.93145 -20.92731 -19.84930 -18.69912 -18.04595 -17.78065 -17.42976 -16.94049 -16.69328 -16.44521 -16.35472 -15.64948 -15.43366 -15.10203 -14.94708 -14.66273 -14.19385 -14.07644 -13.96131 -13.90351 -13.51311 -13.43054 -12.92043 -12.67507 -12.44793 -12.25862 -12.23246 -11.95330 -11.52230 -11.49979 -11.32445 -11.22379 -10.79658 -10.35312 -10.06541 -9.63202 -9.39241 -8.27986 -6.44737 -0.01945 0.16052 1.43248 1.48092 1.56064 1.86564 2.20224 2.38224 2.48815 3.06589 3.12112 3.24160 3.39576 3.53287 3.60130 3.77305 3.99161 4.13983 4.15258 4.21294 4.29034 4.54305 4.57402 4.81754 4.89407 4.92937 5.06165 5.08931 5.11299 5.19721 5.26572 5.28176 5.31263 5.41333 5.47988 5.52820 5.65292 5.84348 5.84488 6.20149 6.66274 7.22689 7.26885 7.67411 8.84236 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.025283 B = 0.002670 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.183944 B =10484.790961 C =10659.308702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.286 3.714 10 N -0.723 5.723 11 C 0.693 3.307 12 O -0.647 6.647 13 N -0.729 5.729 14 C 0.185 3.815 15 C -0.139 4.139 16 C -0.069 4.069 17 C -0.061 4.061 18 C -0.133 4.133 19 C -0.169 4.169 20 C -0.166 4.166 21 C -0.081 4.081 22 C -0.148 4.148 23 C 0.088 3.912 24 F -0.150 7.150 25 H 0.269 0.731 26 H -0.015 1.015 27 H -0.012 1.012 28 H 0.404 0.596 29 H 0.407 0.593 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.144 0.856 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.161 0.839 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.784 -25.230 3.549 31.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.376 5.376 11 C 0.393 3.607 12 O -0.529 6.529 13 N -0.386 5.386 14 C 0.061 3.939 15 C -0.140 4.140 16 C -0.087 4.087 17 C -0.061 4.061 18 C -0.151 4.151 19 C -0.206 4.206 20 C -0.203 4.203 21 C -0.099 4.099 22 C -0.166 4.166 23 C 0.068 3.932 24 F -0.128 7.128 25 H 0.078 0.922 26 H 0.003 0.997 27 H 0.006 0.994 28 H 0.239 0.761 29 H 0.242 0.758 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.178 0.822 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 16.506 -25.278 3.506 30.393 hybrid contribution 0.276 1.299 -0.424 1.394 sum 16.782 -23.979 3.082 29.430 Atomic orbital electron populations 1.70138 1.08269 1.28670 1.49820 1.26081 0.95814 1.03896 0.93826 0.85175 0.77880 0.76466 0.79477 1.18750 1.20974 1.18577 1.21565 0.94283 0.90468 1.53116 0.89896 1.18426 0.88077 0.83250 0.94014 1.45310 1.10932 1.03768 1.77599 1.16264 0.85014 0.81533 0.77891 1.90837 1.16549 1.84924 1.60634 1.44934 1.08943 1.04197 1.80538 1.19838 0.93530 0.78021 1.02518 1.19773 0.98656 1.01633 0.93947 1.20932 0.96377 0.94685 0.96753 1.19384 0.94984 0.96731 0.94974 1.21056 1.04073 0.93990 0.96019 1.23198 0.90245 1.02461 1.04657 1.23117 1.00976 0.92057 1.04181 1.21244 0.99577 0.98510 0.90588 1.21357 0.96650 0.97272 1.01329 1.17913 0.97379 0.95936 0.81976 1.91504 1.91982 1.79761 1.49577 0.92192 0.99730 0.99440 0.76074 0.75754 0.90419 0.92502 0.83791 0.86320 0.87442 0.87384 0.87505 0.88488 0.82202 0.82669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.99 43.04 29.54 68.60 2.03 45.07 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.56 -31.16 9.28 25.60 0.24 -30.92 16 8 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.29 16.40 5.43 85.63 0.46 16.86 16 10 N -0.72 -32.97 5.55 -482.30 -2.68 -35.64 16 11 C 0.69 30.88 8.57 179.05 1.53 32.42 16 12 O -0.65 -35.05 16.34 -3.99 -0.07 -35.12 16 13 N -0.73 -23.75 5.55 -482.30 -2.68 -26.43 16 14 C 0.18 5.33 5.49 85.63 0.47 5.80 16 15 C -0.14 -3.06 5.25 -19.82 -0.10 -3.17 16 16 C -0.07 -1.21 9.36 22.26 0.21 -1.00 16 17 C -0.06 -0.85 5.61 -19.86 -0.11 -0.96 16 18 C -0.13 -1.39 6.04 -11.54 -0.07 -1.46 16 19 C -0.17 -1.20 9.86 30.59 0.30 -0.90 16 20 C -0.17 -1.35 10.16 30.59 0.31 -1.04 16 21 C -0.08 -1.00 9.30 22.26 0.21 -0.80 16 22 C -0.15 -2.30 10.03 22.31 0.22 -2.08 16 23 C 0.09 1.92 7.25 22.37 0.16 2.08 16 24 F -0.15 -4.04 16.76 44.97 0.75 -3.29 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 26 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 27 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H 0.40 15.35 8.34 -92.71 -0.77 14.58 16 29 H 0.41 10.89 8.48 -92.70 -0.79 10.11 16 30 H 0.08 2.22 7.95 -2.39 -0.02 2.20 16 31 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 32 H 0.14 2.22 8.00 -2.91 -0.02 2.19 16 33 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 0.56 6.17 -2.39 -0.01 0.55 16 35 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.16 1.07 6.02 -2.91 -0.02 1.05 16 39 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -75.57 341.27 1.48 -74.10 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -0.46 Total: 22.74 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 4.30 Total: 15.49 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -5.07 Total: -118.99 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.07 Total: -35.12 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.75 Total: -3.29 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.57 1.48 -74.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458725633.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.516 kcal (2) G-P(sol) polarization free energy of solvation -75.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds