Wall clock time and date at job start Tue Mar 31 2020 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35776 * 116.99498 * 2 1 4 4 N 1.32147 * 120.19080 * 359.97438 * 3 2 1 5 5 N 1.28309 * 122.18396 * 180.02562 * 4 3 2 6 6 C 1.31894 * 122.44305 * 0.02562 * 5 4 3 7 7 C 1.38531 * 120.03757 * 359.97438 * 6 5 4 8 8 C 1.39331 * 117.93582 * 359.97438 * 7 6 5 9 9 N 1.39773 * 121.11316 * 180.02562 * 8 7 6 10 10 C 1.34778 * 119.99627 * 10.02386 * 9 8 7 11 11 O 1.21585 * 120.00294 * 5.68869 * 10 9 8 12 12 N 1.34777 * 119.99749 * 185.68650 * 10 9 8 13 13 C 1.46492 * 120.00045 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47327 * 185.14202 * 13 12 10 15 15 C 1.50694 * 115.55046 * 58.03696 * 14 13 12 16 16 H 1.08004 * 120.00037 * 264.81650 * 15 14 13 17 17 C 1.37880 * 120.00289 * 84.80504 * 15 14 13 18 18 N 1.31518 * 119.99634 * 2.06572 * 17 15 14 19 19 Si 1.86792 * 120.00291 * 182.05450 * 17 15 14 20 20 H 1.48500 * 109.46950 * 60.00857 * 19 17 15 21 21 H 1.48500 * 109.47126 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47563 * 300.00524 * 19 17 15 23 23 C 1.52999 * 117.49467 * 272.36891 * 14 13 12 24 24 C 1.53004 * 117.49833 * 203.70832 * 14 13 12 25 25 H 1.09000 * 109.47260 * 60.00413 * 1 2 3 26 26 H 1.09003 * 109.46364 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47515 * 299.99867 * 1 2 3 28 28 H 1.08000 * 119.98358 * 179.97438 * 6 5 4 29 29 H 1.08004 * 121.03398 * 180.02562 * 7 6 5 30 30 H 0.96997 * 120.00077 * 190.02635 * 9 8 7 31 31 H 0.97004 * 119.99668 * 0.02562 * 12 10 9 32 32 H 1.08998 * 109.47290 * 305.14020 * 13 12 10 33 33 H 1.09003 * 109.47365 * 65.13789 * 13 12 10 34 34 H 0.97000 * 119.99780 * 185.01658 * 18 17 15 35 35 H 1.08991 * 117.50073 * 359.97438 * 23 14 13 36 36 H 1.08998 * 117.49596 * 145.02176 * 23 14 13 37 37 H 1.08998 * 117.49339 * 214.98044 * 24 14 13 38 38 H 1.08999 * 117.49865 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 7 1.3292 2.3204 -0.0005 5 7 1.8715 3.4833 -0.0010 6 6 3.1793 3.6541 -0.0016 7 6 4.0222 2.5548 -0.0011 8 6 3.4425 1.2878 0.0006 9 7 4.2302 0.1331 0.0017 10 6 5.5595 0.2245 0.2044 11 8 6.0590 1.2960 0.4886 12 7 6.3352 -0.8720 0.0921 13 6 7.7800 -0.7728 0.3129 14 6 8.4372 -2.1188 0.0009 15 6 8.2182 -2.6409 -1.3957 16 1 7.4170 -3.3380 -1.5922 17 6 9.0405 -2.2284 -2.4227 18 7 10.0410 -1.4112 -2.1762 19 14 8.7337 -2.8306 -4.1641 20 1 7.3773 -2.4124 -4.6007 21 1 9.7497 -2.2465 -5.0761 22 1 8.8305 -4.3121 -4.1999 23 6 8.5196 -3.1441 1.1335 24 6 9.7831 -2.4185 0.6642 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.5933 4.6516 -0.0024 29 1 5.0954 2.6760 -0.0011 30 1 3.8202 -0.7339 -0.1434 31 1 5.9367 -1.7267 -0.1350 32 1 8.1956 -0.0056 -0.3402 33 1 7.9713 -0.5074 1.3527 34 1 10.5747 -1.0634 -2.9078 35 1 8.1060 -2.8596 2.1010 36 1 8.4157 -4.1963 0.8685 37 1 10.5098 -2.9935 0.0904 38 1 10.2005 -1.6566 1.3224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558213803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:51 Heat of formation + Delta-G solvation = 7.332900 kcal Electronic energy + Delta-G solvation = -22958.866433 eV Core-core repulsion = 19417.062197 eV Total energy + Delta-G solvation = -3541.804237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.60817 -41.13629 -39.43057 -38.66693 -36.55008 -35.27934 -33.96310 -33.13809 -31.94555 -28.54537 -28.17459 -27.18677 -25.19782 -24.85793 -22.94828 -22.16405 -21.28061 -20.15586 -19.59516 -19.16761 -18.02009 -17.78582 -17.44039 -16.75477 -16.60572 -16.39667 -15.87383 -15.51801 -15.44393 -15.22438 -15.06321 -14.70012 -14.48810 -13.93869 -13.47207 -12.97602 -12.94898 -12.81386 -12.78545 -12.41273 -12.36957 -12.28643 -11.99885 -11.68510 -11.37034 -10.97313 -10.74715 -10.50438 -10.40276 -10.17960 -9.90748 -9.37994 -8.09596 -6.22371 -0.31018 -0.05530 1.31527 1.43043 1.45324 1.50395 1.77785 1.91890 2.42606 2.56154 2.97833 3.08310 3.20362 3.34037 3.54517 3.84750 4.00724 4.25365 4.37302 4.42604 4.47580 4.56009 4.64657 4.69082 4.72828 4.77271 4.94808 5.04438 5.05692 5.29647 5.31895 5.53854 5.61006 5.69591 5.78317 5.82347 5.92767 6.37143 6.84091 6.88676 7.34310 7.47758 7.60858 8.97721 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.003865 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.144139 B = 7243.194614 C = 7474.365709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.311 6.311 3 C 0.231 3.769 4 N -0.295 5.295 5 N -0.260 5.260 6 C 0.049 3.951 7 C -0.146 4.146 8 C 0.160 3.840 9 N -0.653 5.653 10 C 0.700 3.300 11 O -0.604 6.604 12 N -0.699 5.699 13 C 0.195 3.805 14 C 0.002 3.998 15 C -0.502 4.502 16 H 0.063 0.937 17 C 0.029 3.971 18 N -0.905 5.905 19 Si 0.943 3.057 20 H -0.274 1.274 21 H -0.293 1.293 22 H -0.271 1.271 23 C -0.179 4.179 24 C -0.154 4.154 25 H 0.061 0.939 26 H 0.131 0.869 27 H 0.061 0.939 28 H 0.210 0.790 29 H 0.188 0.812 30 H 0.429 0.571 31 H 0.411 0.589 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.258 0.742 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.989 2.002 4.649 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.215 6.215 3 C 0.041 3.959 4 N -0.150 5.150 5 N -0.103 5.103 6 C -0.117 4.117 7 C -0.178 4.178 8 C 0.049 3.951 9 N -0.299 5.299 10 C 0.400 3.600 11 O -0.485 6.485 12 N -0.351 5.351 13 C 0.071 3.929 14 C 0.001 3.999 15 C -0.540 4.540 16 H 0.081 0.919 17 C -0.172 4.172 18 N -0.542 5.542 19 Si 0.770 3.230 20 H -0.199 1.199 21 H -0.219 1.219 22 H -0.196 1.196 23 C -0.216 4.216 24 C -0.192 4.192 25 H 0.079 0.921 26 H 0.149 0.851 27 H 0.080 0.920 28 H 0.227 0.773 29 H 0.204 0.796 30 H 0.268 0.732 31 H 0.247 0.753 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.673 3.230 4.808 16.709 hybrid contribution 1.199 -1.483 -1.307 2.312 sum -14.474 1.747 3.501 14.994 Atomic orbital electron populations 1.23235 0.74698 1.05457 1.02727 1.86169 1.25164 1.22164 1.88045 1.21166 0.88315 0.88527 0.97890 1.72837 1.31742 0.94103 1.16333 1.72547 1.12839 1.13124 1.11838 1.24592 0.89522 1.01883 0.95704 1.23372 1.05725 0.89784 0.98886 1.18077 0.87609 0.88771 1.00630 1.42263 1.05688 1.09268 1.72682 1.16050 0.80661 0.84826 0.78450 1.90663 1.73698 1.27715 1.56435 1.44972 1.08072 1.09907 1.72132 1.20562 0.77087 0.97875 0.97406 1.19074 0.97181 0.91488 0.92147 1.20613 1.14517 1.26986 0.91842 0.91864 1.25616 0.94233 0.95409 1.01981 1.70091 1.18772 1.32956 1.32402 0.85854 0.77597 0.78742 0.80826 1.19931 1.21933 1.19609 1.23049 1.02442 0.97774 0.98298 1.22397 0.91603 1.02568 1.02627 0.92069 0.85064 0.92013 0.77301 0.79585 0.73225 0.75295 0.94593 0.93533 0.93288 0.89015 0.89871 0.91939 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.40 113.37 1.18 1.69 16 2 O -0.31 -6.86 9.88 -91.04 -0.90 -7.76 16 3 C 0.23 6.17 7.60 85.06 0.65 6.81 16 4 N -0.30 -8.27 10.40 -169.89 -1.77 -10.04 16 5 N -0.26 -7.19 11.49 -57.33 -0.66 -7.84 16 6 C 0.05 1.18 11.30 84.75 0.96 2.14 16 7 C -0.15 -4.11 9.07 22.60 0.21 -3.91 16 8 C 0.16 4.53 6.66 38.55 0.26 4.79 16 9 N -0.65 -17.92 5.39 -316.13 -1.71 -19.63 16 10 C 0.70 23.80 8.47 179.05 1.52 25.32 16 11 O -0.60 -23.81 13.00 -3.98 -0.05 -23.86 16 12 N -0.70 -24.12 5.38 -478.54 -2.58 -26.69 16 13 C 0.20 8.05 5.54 86.38 0.48 8.52 16 14 C 0.00 0.08 1.51 -52.93 -0.08 0.00 16 15 C -0.50 -24.09 8.39 25.60 0.21 -23.88 16 16 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 17 C 0.03 1.45 5.42 84.65 0.46 1.91 16 18 N -0.90 -49.12 12.72 21.45 0.27 -48.85 16 19 Si 0.94 40.84 29.54 68.60 2.03 42.86 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 C -0.18 -6.57 9.94 30.62 0.30 -6.27 16 24 C -0.15 -6.59 9.25 30.62 0.28 -6.31 16 25 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 26 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 28 H 0.21 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.19 5.86 5.06 -14.00 -0.07 5.79 16 30 H 0.43 9.47 8.24 -92.71 -0.76 8.71 16 31 H 0.41 12.52 8.27 -92.71 -0.77 11.76 16 32 H 0.04 1.75 8.13 -2.39 -0.02 1.73 16 33 H 0.05 1.83 8.11 -2.39 -0.02 1.82 16 34 H 0.26 13.69 8.32 -92.71 -0.77 12.92 16 35 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -61.65 331.61 0.59 -61.06 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.47 Total: 29.93 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.42 Total: 10.82 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -6.43 Total: -113.05 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.95 Total: -31.62 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -61.65 0.59 -61.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558213803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.390 kcal (2) G-P(sol) polarization free energy of solvation -61.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds