Wall clock time and date at job start Tue Mar 31 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99597 * 2 1 4 4 C 1.53005 * 109.46994 * 183.80124 * 3 2 1 5 5 N 1.46496 * 115.54813 * 54.48796 * 4 3 2 6 6 S 1.65597 * 120.00422 * 65.83314 * 5 4 3 7 7 O 1.42100 * 106.40666 * 177.85958 * 6 5 4 8 8 O 1.42103 * 106.40517 * 310.78276 * 6 5 4 9 9 N 1.65606 * 107.21638 * 64.32003 * 6 5 4 10 10 C 1.46500 * 119.99770 * 267.13255 * 9 6 5 11 11 C 1.46500 * 119.99636 * 87.13645 * 9 6 5 12 12 H 1.08990 * 109.47566 * 359.97438 * 11 9 6 13 13 C 1.53000 * 109.46854 * 239.99624 * 11 9 6 14 14 C 1.50703 * 109.47147 * 120.00480 * 11 9 6 15 15 H 1.07999 * 119.99995 * 32.45175 * 14 11 9 16 16 C 1.37873 * 119.99788 * 212.46286 * 14 11 9 17 17 N 1.31516 * 119.99976 * 179.04036 * 16 14 11 18 18 Si 1.86798 * 120.00096 * 359.03656 * 16 14 11 19 19 H 1.48504 * 109.47141 * 87.70789 * 18 16 14 20 20 H 1.48497 * 109.47542 * 207.70527 * 18 16 14 21 21 H 1.48505 * 109.47432 * 327.70742 * 18 16 14 22 22 C 1.52999 * 117.50101 * 268.81833 * 4 3 2 23 23 C 1.52999 * 117.50057 * 200.15348 * 4 3 2 24 24 H 1.08999 * 109.46786 * 295.48854 * 1 2 3 25 25 H 1.09005 * 109.46843 * 175.49702 * 1 2 3 26 26 H 1.08994 * 109.47404 * 55.49055 * 1 2 3 27 27 H 1.09005 * 109.47293 * 303.80266 * 3 2 1 28 28 H 1.08996 * 109.47173 * 63.80353 * 3 2 1 29 29 H 0.97002 * 120.00163 * 245.83701 * 5 4 3 30 30 H 1.08999 * 109.46987 * 94.60730 * 10 9 6 31 31 H 1.09003 * 109.46834 * 214.59821 * 10 9 6 32 32 H 1.08993 * 109.47160 * 334.60373 * 10 9 6 33 33 H 1.08995 * 109.47659 * 184.83521 * 13 11 9 34 34 H 1.09000 * 109.47295 * 304.83581 * 13 11 9 35 35 H 1.09004 * 109.47007 * 64.83261 * 13 11 9 36 36 H 0.97006 * 119.99703 * 179.97438 * 17 16 14 37 37 H 1.09002 * 117.49177 * 359.97438 * 22 4 3 38 38 H 1.08989 * 117.50005 * 145.02143 * 22 4 3 39 39 H 1.08988 * 117.50115 * 214.98133 * 23 4 3 40 40 H 1.09005 * 117.49417 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5325 1.1861 -0.0956 5 7 4.0349 0.4006 -1.2256 6 16 3.8064 0.9388 -2.7749 7 8 4.4432 -0.0046 -3.6256 8 8 2.4308 1.2784 -2.8830 9 7 4.6511 2.3546 -2.9316 10 6 3.9853 3.6360 -2.6848 11 6 6.0642 2.3255 -3.3171 12 1 6.3817 1.2922 -3.4562 13 6 6.9065 2.9737 -2.2166 14 6 6.2493 3.0861 -4.6049 15 1 5.6222 3.9376 -4.8241 16 6 7.2191 2.6947 -5.5034 17 7 7.3682 3.3468 -6.6357 18 14 8.3214 1.2382 -5.1123 19 1 7.6704 -0.0137 -5.5751 20 1 9.6246 1.4036 -5.8049 21 1 8.5457 1.1667 -3.6460 22 6 4.3199 1.1222 1.2147 23 6 4.3652 2.3880 0.3549 24 1 -0.3633 0.4422 0.9277 25 1 -0.3633 -1.0246 -0.0807 26 1 -0.3634 0.5822 -0.8468 27 1 1.6356 1.8700 -0.8540 28 1 1.7435 1.8219 0.9221 29 1 4.5014 -0.4348 -1.0663 30 1 4.1587 3.9428 -1.6533 31 1 4.3876 4.3906 -3.3607 32 1 2.9144 3.5280 -2.8566 33 1 7.9459 3.0298 -2.5399 34 1 6.5333 3.9783 -2.0174 35 1 6.8404 2.3749 -1.3082 36 1 8.0508 3.0716 -7.2676 37 1 3.7533 1.1658 2.1448 38 1 5.2118 0.4962 1.2358 39 1 5.2869 2.5940 -0.1891 40 1 3.8283 3.2640 0.7191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569210952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:43 Heat of formation + Delta-G solvation = -115.122905 kcal Electronic energy + Delta-G solvation = -23621.561721 eV Core-core repulsion = 20177.598602 eV Total energy + Delta-G solvation = -3443.963119 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.86831 -38.31384 -38.02795 -37.65290 -36.87666 -34.48000 -33.04894 -31.64119 -29.01438 -27.31001 -26.98439 -26.42131 -23.43975 -22.39682 -21.80476 -19.99167 -19.24615 -18.71575 -18.25293 -17.71577 -17.09803 -16.91315 -16.43866 -16.27566 -15.83874 -15.27714 -14.96551 -14.67857 -14.48307 -14.39833 -13.75009 -13.56781 -13.50371 -13.40653 -13.11444 -12.98988 -12.97146 -12.83655 -12.53749 -12.49560 -12.39891 -12.28816 -12.03931 -11.92020 -11.72595 -11.21060 -11.01299 -10.77615 -10.55427 -10.29415 -9.64825 -8.31233 -6.34313 -0.35404 1.30128 1.39650 1.41516 1.99876 2.32837 2.46124 2.61204 3.07664 3.09485 3.44869 3.76597 3.89644 3.96499 4.12193 4.26881 4.45773 4.48447 4.55720 4.61656 4.74390 4.77015 4.79146 4.83938 4.86167 4.92181 4.97711 5.09706 5.17608 5.22584 5.31205 5.41452 5.52139 5.61372 5.92847 6.14538 6.28319 6.35296 6.72346 7.31248 8.84613 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.005881 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.712940 B = 4759.990456 C = 4982.755987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.079 3.921 4 C 0.069 3.931 5 N -1.080 6.080 6 S 2.789 3.211 7 O -1.025 7.025 8 O -1.002 7.002 9 N -0.987 5.987 10 C 0.091 3.909 11 C 0.240 3.760 12 H 0.038 0.962 13 C -0.142 4.142 14 C -0.516 4.516 15 H 0.052 0.948 16 C 0.021 3.979 17 N -0.940 5.940 18 Si 0.911 3.089 19 H -0.285 1.285 20 H -0.278 1.278 21 H -0.226 1.226 22 C -0.135 4.135 23 C -0.173 4.173 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.420 0.580 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.266 0.734 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.147 -2.582 21.081 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.001 3.999 4 C -0.021 4.021 5 N -0.840 5.840 6 S 2.799 3.201 7 O -1.010 7.010 8 O -0.985 6.985 9 N -0.829 5.829 10 C -0.054 4.054 11 C 0.135 3.865 12 H 0.055 0.945 13 C -0.202 4.202 14 C -0.556 4.556 15 H 0.070 0.930 16 C -0.178 4.178 17 N -0.580 5.580 18 Si 0.735 3.265 19 H -0.211 1.211 20 H -0.204 1.204 21 H -0.149 1.149 22 C -0.174 4.174 23 C -0.211 4.211 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.256 0.744 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.144 0.856 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.585 -3.011 20.197 22.152 hybrid contribution 0.728 -0.648 -0.718 1.211 sum -7.857 -3.659 19.479 21.320 Atomic orbital electron populations 1.22903 0.80038 1.03447 1.00755 1.87828 1.20870 1.28224 1.95572 1.22560 0.89992 0.85293 1.02089 1.20581 0.90832 1.00535 0.90157 1.55087 1.73003 1.33875 1.22015 1.01455 0.72870 0.72696 0.73058 1.93541 1.77883 1.63637 1.65897 1.93480 1.33987 1.84402 1.86663 1.57514 1.21609 1.20660 1.83074 1.21542 0.96526 0.85206 1.02171 1.18862 0.77812 0.96127 0.93723 0.94464 1.22195 0.99295 1.01522 0.97150 1.21467 1.17415 1.14134 1.02607 0.92961 1.25719 0.98860 0.98777 0.94443 1.70015 1.35234 1.42757 1.10020 0.86296 0.78703 0.80113 0.81356 1.21131 1.20379 1.14885 1.23392 1.01459 0.99620 0.92913 1.23855 1.01874 0.92936 1.02454 0.91940 0.88953 0.94633 0.92613 0.89127 0.74422 0.90014 0.91858 0.91231 0.93303 0.91438 0.91990 0.92483 0.85567 0.87517 0.87343 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -10.52 10.64 -148.98 -1.59 -12.10 16 3 C 0.08 1.78 5.41 71.98 0.39 2.17 16 4 C 0.07 1.54 2.42 3.61 0.01 1.55 16 5 N -1.08 -30.89 5.91 -152.21 -0.90 -31.79 16 6 S 2.79 108.87 6.13 -56.49 -0.35 108.53 16 7 O -1.03 -49.43 16.79 -128.00 -2.15 -51.58 16 8 O -1.00 -41.00 14.34 -128.00 -1.84 -42.84 16 9 N -0.99 -38.13 3.12 -520.46 -1.62 -39.76 16 10 C 0.09 2.93 9.54 127.77 1.22 4.15 16 11 C 0.24 10.60 2.17 44.25 0.10 10.70 16 12 H 0.04 1.77 4.52 -2.39 -0.01 1.76 16 13 C -0.14 -4.99 8.49 71.98 0.61 -4.38 16 14 C -0.52 -28.35 8.75 25.60 0.22 -28.12 16 15 H 0.05 3.11 6.77 -2.91 -0.02 3.09 16 16 C 0.02 1.21 5.47 84.65 0.46 1.67 16 17 N -0.94 -58.32 13.96 21.45 0.30 -58.02 16 18 Si 0.91 44.34 26.42 68.60 1.81 46.15 16 19 H -0.28 -14.62 7.11 99.48 0.71 -13.91 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.23 -9.59 6.34 99.48 0.63 -8.96 16 22 C -0.14 -2.03 10.15 30.62 0.31 -1.72 16 23 C -0.17 -2.92 8.64 30.62 0.26 -2.66 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.03 0.76 8.13 -2.39 -0.02 0.74 16 27 H 0.06 1.49 6.52 -2.38 -0.02 1.48 16 28 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 29 H 0.42 10.75 8.96 -96.75 -0.87 9.89 16 30 H 0.08 1.94 6.51 -2.39 -0.02 1.93 16 31 H 0.06 2.29 6.54 -2.39 -0.02 2.27 16 32 H 0.07 2.19 6.90 -2.39 -0.02 2.17 16 33 H 0.05 1.80 7.21 -2.39 -0.02 1.78 16 34 H 0.07 2.16 7.51 -2.39 -0.02 2.15 16 35 H 0.06 1.73 6.62 -2.39 -0.02 1.71 16 36 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 37 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.11 2.10 5.88 -2.39 -0.01 2.09 16 40 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -76.17 329.09 -1.38 -77.55 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.11 Total: 18.78 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 4.83 Total: -14.91 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -2.22 Total: -129.57 kcal Atomic # 8 Polarization: -100.95 SS G_CDS: -5.57 Total: -106.52 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.81 Total: 46.15 kcal Atomic # 16 Polarization: 108.87 SS G_CDS: -0.35 Total: 108.53 kcal Total: -76.17 -1.38 -77.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569210952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.575 kcal (2) G-P(sol) polarization free energy of solvation -76.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds