Wall clock time and date at job start Tue Mar 31 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42893 * 114.00218 * 2 1 4 4 C 1.53003 * 109.46992 * 185.69080 * 3 2 1 5 5 N 1.46498 * 115.55107 * 295.19625 * 4 3 2 6 6 S 1.65608 * 120.00117 * 264.61632 * 5 4 3 7 7 O 1.42094 * 106.40129 * 178.68068 * 6 5 4 8 8 O 1.42097 * 106.40025 * 311.60272 * 6 5 4 9 9 N 1.65606 * 107.21345 * 65.14090 * 6 5 4 10 10 C 1.46494 * 119.99665 * 271.19904 * 9 6 5 11 11 C 1.46497 * 119.99702 * 91.20583 * 9 6 5 12 12 H 1.08993 * 109.47407 * 353.60577 * 11 9 6 13 13 C 1.53006 * 109.47045 * 113.60601 * 11 9 6 14 14 C 1.50699 * 109.46852 * 233.59930 * 11 9 6 15 15 H 1.07994 * 120.00131 * 355.13127 * 14 11 9 16 16 C 1.37874 * 119.99692 * 175.11680 * 14 11 9 17 17 N 1.31523 * 120.00000 * 180.02562 * 16 14 11 18 18 Si 1.86797 * 120.00510 * 0.02562 * 16 14 11 19 19 H 1.48499 * 109.47186 * 89.99119 * 18 16 14 20 20 H 1.48494 * 109.47231 * 209.99683 * 18 16 14 21 21 H 1.48502 * 109.46969 * 329.99365 * 18 16 14 22 22 C 1.53004 * 117.51892 * 80.89721 * 4 3 2 23 23 C 1.53001 * 117.49781 * 149.52524 * 4 3 2 24 24 H 1.09002 * 109.47760 * 185.71061 * 1 2 3 25 25 H 1.09005 * 109.47032 * 305.71556 * 1 2 3 26 26 H 1.08997 * 109.47175 * 65.71101 * 1 2 3 27 27 H 1.08997 * 109.47117 * 65.69708 * 3 2 1 28 28 H 1.08995 * 109.47103 * 305.68857 * 3 2 1 29 29 H 0.96998 * 120.00099 * 84.89417 * 5 4 3 30 30 H 1.09008 * 109.47055 * 90.33108 * 10 9 6 31 31 H 1.09004 * 109.47163 * 210.32695 * 10 9 6 32 32 H 1.08997 * 109.47820 * 330.32973 * 10 9 6 33 33 H 1.08995 * 109.46720 * 299.99833 * 13 11 9 34 34 H 1.09002 * 109.46860 * 59.99816 * 13 11 9 35 35 H 1.08999 * 109.46708 * 179.97438 * 13 11 9 36 36 H 0.96995 * 119.99990 * 180.02562 * 17 16 14 37 37 H 1.08993 * 117.49750 * 214.97084 * 22 4 3 38 38 H 1.09001 * 117.49400 * 359.97438 * 22 4 3 39 39 H 1.09003 * 117.50131 * 359.97438 * 23 4 3 40 40 H 1.09000 * 117.49744 * 144.97060 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5290 1.1874 -0.1430 5 7 4.2192 0.5298 0.9693 6 16 4.8862 1.4381 2.1829 7 8 5.4453 0.5190 3.1111 8 8 5.6431 2.4603 1.5493 9 7 3.6411 2.1968 2.9682 10 6 3.1735 3.5061 2.5064 11 6 3.0075 1.5586 4.1247 12 1 3.4068 0.5521 4.2483 13 6 3.2969 2.3802 5.3826 14 6 1.5185 1.4850 3.9045 15 1 1.0783 1.9440 3.0317 16 6 0.7182 0.8312 4.8172 17 7 -0.5813 0.7665 4.6248 18 14 1.4794 0.0375 6.3271 19 1 1.5165 1.0219 7.4383 20 1 0.6655 -1.1365 6.7327 21 1 2.8615 -0.4040 6.0106 22 6 4.0920 0.9730 -1.5495 23 6 4.2620 2.3259 -0.8553 24 1 -0.3635 -1.0225 0.1023 25 1 -0.3633 0.5999 0.8344 26 1 -0.3633 0.4227 -0.9367 27 1 1.7716 1.8093 0.9366 28 1 1.6103 1.8811 -0.8346 29 1 4.2891 -0.4373 0.9930 30 1 2.3792 3.3700 1.7724 31 1 2.7913 4.0751 3.3540 32 1 4.0018 4.0473 2.0493 33 1 4.3738 2.4335 5.5418 34 1 2.8975 3.3868 5.2590 35 1 2.8251 1.9055 6.2430 36 1 -1.1443 0.3069 5.2672 37 1 4.9759 0.3428 -1.6470 38 1 3.3803 0.9156 -2.3731 39 1 3.6623 3.1588 -1.2224 40 1 5.2577 2.5860 -0.4960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569210954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:45 Heat of formation + Delta-G solvation = -107.081133 kcal Electronic energy + Delta-G solvation = -23908.323691 eV Core-core repulsion = 20464.709290 eV Total energy + Delta-G solvation = -3443.614401 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.87885 -38.40128 -38.00927 -37.61198 -36.92129 -34.46623 -33.01692 -31.76604 -28.99349 -27.19919 -27.03670 -26.35935 -23.42805 -22.64555 -21.82201 -19.98596 -19.07419 -18.52006 -18.25477 -17.75101 -17.13986 -16.98715 -16.55434 -16.30555 -15.78167 -15.29986 -15.13996 -14.82606 -14.47550 -14.17381 -13.94317 -13.78653 -13.52986 -13.37104 -13.24278 -13.04581 -12.99148 -12.82929 -12.73816 -12.38765 -12.20140 -12.14711 -12.00868 -11.86810 -11.59759 -11.23777 -11.04664 -10.73588 -10.51357 -10.34701 -9.71962 -8.25914 -6.26712 -0.31554 1.29545 1.38320 1.45437 1.89405 2.33089 2.43352 2.56290 3.09068 3.13756 3.36671 3.76209 3.87099 3.98152 4.10151 4.27471 4.44294 4.49422 4.55946 4.66247 4.68491 4.71448 4.77616 4.83921 4.87225 4.92920 4.97329 5.08766 5.12739 5.18617 5.23919 5.31828 5.51081 5.57507 5.84899 6.12331 6.31560 6.38418 6.76741 7.36902 8.88633 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.015686 B = 0.008407 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.570508 B = 3329.771600 C = 4399.060940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.400 6.400 3 C 0.083 3.917 4 C 0.073 3.927 5 N -1.084 6.084 6 S 2.798 3.202 7 O -1.019 7.019 8 O -0.989 6.989 9 N -0.987 5.987 10 C 0.094 3.906 11 C 0.241 3.759 12 H 0.036 0.964 13 C -0.159 4.159 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.030 3.970 17 N -0.932 5.932 18 Si 0.912 3.088 19 H -0.262 1.262 20 H -0.296 1.296 21 H -0.259 1.259 22 C -0.144 4.144 23 C -0.165 4.165 24 H 0.085 0.915 25 H 0.023 0.977 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.419 0.581 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.264 0.736 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 3.300 -11.641 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.319 6.319 3 C 0.005 3.995 4 C -0.018 4.018 5 N -0.843 5.843 6 S 2.807 3.193 7 O -1.003 7.003 8 O -0.973 6.973 9 N -0.828 5.828 10 C -0.051 4.051 11 C 0.135 3.865 12 H 0.054 0.946 13 C -0.218 4.218 14 C -0.542 4.542 15 H 0.081 0.919 16 C -0.169 4.169 17 N -0.572 5.572 18 Si 0.739 3.261 19 H -0.187 1.187 20 H -0.223 1.223 21 H -0.183 1.183 22 C -0.183 4.183 23 C -0.203 4.203 24 H 0.104 0.896 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.254 0.746 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.996 3.351 -11.348 13.746 hybrid contribution -0.882 -0.982 1.180 1.771 sum 6.113 2.368 -10.168 12.099 Atomic orbital electron populations 1.22723 0.80325 1.02881 1.00058 1.87797 1.20375 1.28239 1.95487 1.22476 0.90434 0.85199 1.01432 1.20423 0.89656 1.04125 0.87570 1.55088 1.72879 1.19452 1.36843 1.01326 0.73303 0.72535 0.72124 1.93536 1.77982 1.65518 1.63300 1.93495 1.68953 1.58591 1.76244 1.57334 1.53761 1.29693 1.41978 1.21515 1.00048 0.82964 1.00559 1.18834 0.92827 0.91950 0.82846 0.94636 1.22358 0.99828 1.01858 0.97772 1.21279 0.90198 1.34329 1.08388 0.91922 1.25437 0.94980 0.96347 1.00121 1.69964 1.04809 1.44769 1.37693 0.86398 0.79278 0.78524 0.81877 1.18723 1.22297 1.18335 1.23373 1.03268 0.98741 0.92903 1.23877 1.02981 0.92814 1.00632 0.89606 0.95800 0.91969 0.93212 0.90086 0.74617 0.93076 0.90636 0.89540 0.93154 0.91074 0.93958 0.92690 0.87592 0.85934 0.85244 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.12 11.01 113.37 1.25 2.36 16 2 O -0.40 -13.54 10.70 -148.98 -1.59 -15.14 16 3 C 0.08 2.46 5.99 71.98 0.43 2.89 16 4 C 0.07 1.98 2.54 3.61 0.01 1.99 16 5 N -1.08 -34.57 6.00 -152.21 -0.91 -35.48 16 6 S 2.80 102.70 6.12 -56.49 -0.35 102.36 16 7 O -1.02 -44.43 16.74 -128.00 -2.14 -46.57 16 8 O -0.99 -35.10 13.78 -128.00 -1.76 -36.87 16 9 N -0.99 -37.91 3.12 -520.46 -1.63 -39.53 16 10 C 0.09 3.03 9.53 127.77 1.22 4.25 16 11 C 0.24 10.97 2.15 44.25 0.10 11.06 16 12 H 0.04 1.77 5.72 -2.39 -0.01 1.75 16 13 C -0.16 -6.58 8.85 71.98 0.64 -5.94 16 14 C -0.50 -25.93 8.87 25.60 0.23 -25.71 16 15 H 0.06 3.43 6.71 -2.91 -0.02 3.41 16 16 C 0.03 1.65 5.45 84.65 0.46 2.11 16 17 N -0.93 -54.06 13.96 21.45 0.30 -53.76 16 18 Si 0.91 43.42 24.63 68.60 1.69 45.11 16 19 H -0.26 -11.77 6.88 99.48 0.68 -11.09 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.26 -12.19 6.40 99.48 0.64 -11.56 16 22 C -0.14 -2.92 10.18 30.60 0.31 -2.61 16 23 C -0.17 -3.65 9.32 30.59 0.29 -3.36 16 24 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.02 0.86 8.13 -2.38 -0.02 0.84 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.77 5.38 -2.39 -0.01 1.75 16 28 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 29 H 0.42 12.76 8.96 -96.74 -0.87 11.89 16 30 H 0.05 1.58 6.01 -2.38 -0.01 1.57 16 31 H 0.07 2.41 6.78 -2.38 -0.02 2.40 16 32 H 0.09 2.38 7.02 -2.39 -0.02 2.37 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.71 6.93 -2.39 -0.02 2.69 16 35 H 0.04 1.80 3.92 -2.39 -0.01 1.79 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.12 2.99 5.98 -2.39 -0.01 2.97 16 Total: -1.00 -66.47 326.13 -1.37 -67.84 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.10 Total: 25.00 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 4.92 Total: -12.95 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -2.24 Total: -128.78 kcal Atomic # 8 Polarization: -93.07 SS G_CDS: -5.50 Total: -98.57 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.69 Total: 45.11 kcal Atomic # 16 Polarization: 102.70 SS G_CDS: -0.35 Total: 102.36 kcal Total: -66.47 -1.37 -67.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569210954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.245 kcal (2) G-P(sol) polarization free energy of solvation -66.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds