Wall clock time and date at job start Tue Mar 31 2020 06:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 117.00036 * 2 1 4 4 C 1.38758 * 120.05657 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94280 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05769 * 0.02562 * 5 4 3 7 7 C 1.38235 * 120.11209 * 359.73998 * 6 5 4 8 8 C 1.38168 * 120.05790 * 0.50977 * 7 6 5 9 9 C 1.50697 * 120.03400 * 179.77111 * 8 7 6 10 10 H 1.08992 * 109.47198 * 214.41425 * 9 8 7 11 11 C 1.53001 * 109.47372 * 94.40489 * 9 8 7 12 12 S 1.81404 * 109.46672 * 334.41274 * 9 8 7 13 13 C 1.81405 * 102.99765 * 184.54375 * 12 9 8 14 14 C 1.53002 * 109.47222 * 183.66565 * 13 12 9 15 15 C 1.50705 * 115.54653 * 39.92066 * 14 13 12 16 16 H 1.07999 * 120.00133 * 264.77414 * 15 14 13 17 17 C 1.37882 * 119.99613 * 84.78509 * 15 14 13 18 18 N 1.31506 * 120.00062 * 352.25322 * 17 15 14 19 19 Si 1.86796 * 119.99669 * 172.25540 * 17 15 14 20 20 H 1.48504 * 109.47461 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47171 * 119.99879 * 19 17 15 22 22 H 1.48499 * 109.47306 * 239.99467 * 19 17 15 23 23 C 1.52997 * 117.50040 * 254.21800 * 14 13 12 24 24 C 1.52995 * 117.50254 * 185.59385 * 14 13 12 25 25 H 1.08997 * 109.46846 * 59.99745 * 1 2 3 26 26 H 1.08994 * 109.47005 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47018 * 300.00057 * 1 2 3 28 28 H 1.07997 * 120.02476 * 359.95455 * 4 3 2 29 29 H 1.08003 * 119.97054 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.94291 * 180.02562 * 6 5 4 31 31 H 1.08009 * 119.97585 * 180.26024 * 7 6 5 32 32 H 1.08996 * 109.47248 * 300.00504 * 11 9 8 33 33 H 1.09009 * 109.46736 * 60.00431 * 11 9 8 34 34 H 1.08992 * 109.47288 * 180.02562 * 11 9 8 35 35 H 1.09002 * 109.47084 * 63.66433 * 13 12 9 36 36 H 1.09001 * 109.47036 * 303.66141 * 13 12 9 37 37 H 0.97008 * 120.00175 * 185.02297 * 18 17 15 38 38 H 1.09003 * 117.49601 * 359.97438 * 23 14 13 39 39 H 1.08997 * 117.49818 * 145.01614 * 23 14 13 40 40 H 1.08997 * 117.50255 * 214.97897 * 24 14 13 41 41 H 1.09002 * 117.49511 * 359.97300 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6757 0.0005 7 6 4.0559 2.5171 0.0049 8 6 3.4312 1.2848 -0.0008 9 6 4.2537 0.0221 -0.0013 10 1 3.7438 -0.7434 -0.5861 11 6 4.4339 -0.4697 1.4362 12 16 5.8789 0.3596 -0.7330 13 6 6.6563 -1.2789 -0.7735 14 6 8.0910 -1.1501 -1.2893 15 6 8.8557 0.0490 -0.7907 16 1 8.8920 0.9510 -1.3835 17 6 9.5092 -0.0057 0.4222 18 7 9.3421 -1.0431 1.2130 19 14 10.6319 1.3938 0.9420 20 1 10.6495 2.4341 -0.1176 21 1 10.1315 1.9853 2.2089 22 1 12.0078 0.8743 1.1480 23 6 8.3745 -1.6264 -2.7153 24 6 8.8767 -2.4421 -1.5223 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3204 0.0002 29 1 1.3340 4.5114 0.0011 30 1 3.7922 4.6381 0.0014 31 1 5.1345 2.5752 0.0087 32 1 4.9438 0.2959 2.0210 33 1 3.4573 -0.6725 1.8760 34 1 5.0292 -1.3827 1.4359 35 1 6.0896 -1.9337 -1.4355 36 1 6.6681 -1.7004 0.2316 37 1 9.7430 -1.0492 2.0963 38 1 7.5390 -2.0319 -3.2860 39 1 9.1142 -1.0723 -3.2932 40 1 9.9467 -2.4248 -1.3154 41 1 8.3716 -3.3839 -1.3078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594889513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:20 Heat of formation + Delta-G solvation = -8.518411 kcal Electronic energy + Delta-G solvation = -20987.135883 eV Core-core repulsion = 17958.644745 eV Total energy + Delta-G solvation = -3028.491138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.18721 -38.43263 -38.32910 -35.19631 -33.94294 -31.18243 -30.58301 -29.18783 -28.05830 -27.30035 -25.00602 -23.08237 -22.92280 -22.18887 -21.03990 -18.96816 -18.15986 -17.42654 -17.03052 -16.63138 -16.53867 -16.06878 -15.56337 -15.39565 -15.20265 -15.08912 -14.69250 -14.48083 -14.20468 -13.80712 -13.52210 -13.17870 -13.02561 -12.87967 -12.80131 -12.65305 -12.50697 -12.36244 -12.31399 -11.99708 -11.95093 -11.63673 -11.45440 -10.79228 -10.46482 -10.41276 -9.84528 -9.76216 -9.08535 -8.26047 -8.04659 -6.11768 0.35061 0.48884 1.03219 1.40909 1.44322 1.54310 2.04057 2.41041 2.47352 2.82584 3.24519 3.48772 3.63792 3.97187 4.13378 4.15868 4.21676 4.24758 4.35706 4.42396 4.43354 4.48242 4.54717 4.65098 4.69726 4.72275 4.75296 4.79754 4.86562 4.97490 5.01757 5.06651 5.18311 5.24315 5.36327 5.51056 5.58763 5.62120 5.65345 5.83164 5.89381 6.42583 6.48759 6.88167 7.53379 9.03450 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.004683 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.333108 B = 5977.718219 C = 6721.158676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.124 3.876 4 C -0.206 4.206 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.088 4.088 8 C -0.110 4.110 9 C -0.017 4.017 10 H 0.082 0.918 11 C -0.124 4.124 12 S -0.234 6.234 13 C -0.025 4.025 14 C 0.027 3.973 15 C -0.486 4.486 16 H 0.047 0.953 17 C 0.038 3.962 18 N -0.904 5.904 19 Si 0.938 3.062 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.187 4.187 24 C -0.155 4.155 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.258 0.742 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.145 4.963 -1.088 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.077 3.923 4 C -0.225 4.225 5 C -0.097 4.097 6 C -0.178 4.178 7 C -0.107 4.107 8 C -0.112 4.112 9 C -0.146 4.146 10 H 0.100 0.900 11 C -0.183 4.183 12 S -0.003 6.003 13 C -0.173 4.173 14 C 0.026 3.974 15 C -0.524 4.524 16 H 0.065 0.935 17 C -0.163 4.163 18 N -0.542 5.542 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.224 4.224 24 C -0.194 4.194 25 H 0.085 0.915 26 H 0.132 0.868 27 H 0.086 0.914 28 H 0.175 0.825 29 H 0.176 0.824 30 H 0.159 0.841 31 H 0.138 0.862 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.548 5.619 -1.290 19.424 hybrid contribution 0.436 -0.773 0.900 1.264 sum -18.112 4.846 -0.390 18.753 Atomic orbital electron populations 1.23346 0.76435 1.05407 1.02415 1.86072 1.23458 1.26764 1.88604 1.18876 0.90893 0.85448 0.97074 1.21493 1.01125 0.91495 1.08386 1.21316 0.94156 0.98096 0.96133 1.21307 0.94698 0.98189 1.03574 1.21092 1.00428 0.91870 0.97268 1.18749 0.90767 0.93927 1.07770 1.21775 0.95385 0.97959 0.99442 0.89973 1.21834 1.01598 1.00673 0.94206 1.86906 1.12991 1.17819 1.82621 1.22837 0.98325 0.94268 1.01904 1.18628 0.90361 0.94603 0.93831 1.20395 1.29882 0.97634 1.04530 0.93492 1.25451 0.97035 0.97230 0.96566 1.70064 1.45269 1.30608 1.08215 0.85808 0.79133 0.80399 0.78191 1.19469 1.20813 1.20836 1.23065 1.02851 1.04848 0.91607 1.22475 0.98988 0.95151 1.02790 0.91505 0.86778 0.91373 0.82515 0.82434 0.84119 0.86175 0.92942 0.90967 0.93432 0.92333 0.92560 0.93304 0.89236 0.90330 0.91932 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.42 9.63 -92.41 -0.89 -9.31 16 3 C 0.12 3.36 6.66 22.51 0.15 3.51 16 4 C -0.21 -4.30 9.04 22.37 0.20 -4.10 16 5 C -0.08 -1.58 10.04 22.25 0.22 -1.36 16 6 C -0.16 -3.97 10.04 22.28 0.22 -3.75 16 7 C -0.09 -2.82 9.09 22.25 0.20 -2.61 16 8 C -0.11 -3.60 5.00 -19.77 -0.10 -3.70 16 9 C -0.02 -0.62 2.74 29.85 0.08 -0.54 16 10 H 0.08 2.96 7.68 -2.39 -0.02 2.94 16 11 C -0.12 -4.39 9.08 71.98 0.65 -3.74 16 12 S -0.23 -10.17 17.94 -56.49 -1.01 -11.19 16 13 C -0.02 -1.15 5.80 71.98 0.42 -0.73 16 14 C 0.03 1.35 1.63 -52.93 -0.09 1.26 16 15 C -0.49 -26.71 7.54 25.60 0.19 -26.52 16 16 H 0.05 2.67 7.83 -2.91 -0.02 2.65 16 17 C 0.04 2.09 5.38 84.66 0.46 2.55 16 18 N -0.90 -51.61 12.98 21.45 0.28 -51.34 16 19 Si 0.94 44.39 29.55 68.60 2.03 46.42 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 C -0.19 -8.13 9.88 30.59 0.30 -7.82 16 24 C -0.15 -7.28 9.52 30.59 0.29 -6.99 16 25 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 26 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 28 H 0.16 2.18 6.30 -2.91 -0.02 2.16 16 29 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 31 H 0.12 4.39 6.50 -2.91 -0.02 4.37 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.05 1.78 6.80 -2.39 -0.02 1.76 16 35 H 0.06 2.45 7.95 -2.39 -0.02 2.43 16 36 H 0.06 2.80 6.97 -2.39 -0.02 2.79 16 37 H 0.26 14.16 8.32 -92.70 -0.77 13.39 16 38 H 0.09 3.44 8.08 -2.39 -0.02 3.42 16 39 H 0.08 3.39 8.14 -2.39 -0.02 3.38 16 40 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.07 3.27 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -63.74 349.39 5.73 -58.01 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 1.00 Total: 20.57 kcal Atomic # 6 Polarization: -57.49 SS G_CDS: 4.32 Total: -53.17 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.28 Total: -51.34 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.89 Total: -9.31 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: -10.17 SS G_CDS: -1.01 Total: -11.19 kcal Total: -63.74 5.73 -58.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594889513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.494 kcal (2) G-P(sol) polarization free energy of solvation -63.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds