Wall clock time and date at job start Tue Mar 31 2020 07:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21583 * 119.99943 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99920 * 179.97438 * 12 11 10 15 15 C 1.47067 * 136.05832 * 0.02562 * 14 12 11 16 16 C 1.53503 * 87.98823 * 152.84108 * 15 14 12 17 17 C 1.47068 * 136.05648 * 179.62222 * 14 12 11 18 18 H 1.09003 * 113.46558 * 92.38237 * 17 14 12 19 19 C 1.50692 * 113.47031 * 321.94159 * 17 14 12 20 20 C 1.38243 * 119.97517 * 339.22550 * 19 17 14 21 21 C 1.38199 * 120.02886 * 179.76240 * 20 19 17 22 22 C 1.38462 * 119.97244 * 0.51531 * 21 20 19 23 23 F 1.35098 * 120.02926 * 179.76445 * 22 21 20 24 24 C 1.38467 * 119.94600 * 359.74104 * 22 21 20 25 25 C 1.38195 * 119.97429 * 0.02562 * 24 22 21 26 26 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 28 28 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 29 29 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 30 30 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 31 31 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 32 32 H 1.09004 * 113.46739 * 267.61769 * 15 14 12 33 33 H 1.09003 * 113.47052 * 38.00548 * 15 14 12 34 34 H 1.08994 * 114.20896 * 139.65206 * 16 15 14 35 35 H 1.08996 * 114.20240 * 272.48360 * 16 15 14 36 36 H 1.08000 * 119.98810 * 0.02562 * 20 19 17 37 37 H 1.08000 * 120.01797 * 180.25651 * 21 20 19 38 38 H 1.07996 * 120.01127 * 179.97438 * 24 22 21 39 39 H 1.08002 * 119.98313 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5125 -4.9309 -0.0012 12 6 2.1863 -6.0981 -0.0007 13 8 3.4022 -6.0981 -0.0003 14 7 1.5124 -7.2652 -0.0008 15 6 0.0991 -7.6719 -0.0017 16 6 0.5289 -8.9690 -0.7011 17 6 1.8667 -8.6925 -0.0072 18 1 1.9363 -9.1270 0.9901 19 6 3.0630 -9.0102 -0.8667 20 6 3.4473 -8.1355 -1.8660 21 6 4.5471 -8.4233 -2.6517 22 6 5.2579 -9.5934 -2.4448 23 9 6.3305 -9.8782 -3.2153 24 6 4.8689 -10.4713 -1.4471 25 6 3.7716 -10.1790 -0.6595 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5570 0.8898 28 1 0.6239 -2.5567 -0.8903 29 1 2.8717 -3.6044 -0.8905 30 1 2.8717 -3.6044 0.8894 31 1 0.5425 -4.9308 -0.0011 32 1 -0.3073 -7.8315 0.9971 33 1 -0.5355 -7.0351 -0.6180 34 1 0.0138 -9.8609 -0.3445 35 1 0.5702 -8.8980 -1.7880 36 1 2.8903 -7.2249 -2.0299 37 1 4.8497 -7.7379 -3.4296 38 1 5.4223 -11.3844 -1.2851 39 1 3.4683 -10.8634 0.1190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595579004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:39 Heat of formation + Delta-G solvation = -14.086319 kcal Electronic energy + Delta-G solvation = -22536.863644 eV Core-core repulsion = 18974.210639 eV Total energy + Delta-G solvation = -3562.653005 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.96030 -40.92166 -38.72028 -37.75695 -34.77232 -32.85518 -31.36497 -31.09521 -30.17573 -28.66862 -25.73371 -24.64191 -23.18398 -22.36254 -21.78896 -20.83826 -19.31839 -18.03973 -17.64951 -16.75450 -16.52115 -16.17848 -15.65518 -15.51609 -15.09547 -14.55291 -14.39520 -13.91231 -13.74765 -13.61843 -13.58031 -13.21973 -13.09690 -12.73113 -12.46364 -12.27782 -12.02946 -11.71268 -11.20181 -11.10872 -11.02953 -10.86895 -10.63038 -10.32714 -9.90685 -9.56707 -9.27870 -9.14449 -8.83698 -8.61447 -8.46831 -8.21786 -6.10057 -4.12671 1.00278 1.19567 2.63887 3.29370 3.35469 3.40001 3.48351 3.53584 4.13610 4.18269 4.26112 4.43905 4.53056 4.63017 4.77582 4.84001 5.02755 5.15475 5.18405 5.27180 5.28276 5.34030 5.46798 5.61116 5.82565 5.87685 5.91374 6.02792 6.19483 6.31098 6.37811 6.48082 6.75262 6.80526 6.98962 7.42391 7.57611 7.61761 7.89030 8.25150 8.38887 8.91808 8.98742 9.52162 11.01619 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.003197 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.559528 B = 8757.371483 C = 9825.187367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.272 1.272 6 H -0.286 1.286 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.014 3.986 10 C 0.141 3.859 11 N -0.735 5.735 12 C 0.725 3.275 13 O -0.585 6.585 14 N -0.667 5.667 15 C 0.098 3.902 16 C -0.145 4.145 17 C 0.195 3.805 18 H 0.099 0.901 19 C -0.103 4.103 20 C -0.040 4.040 21 C -0.154 4.154 22 C 0.097 3.903 23 F -0.144 7.144 24 C -0.161 4.161 25 C -0.081 4.081 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.392 0.608 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.003 -23.350 -2.090 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.197 1.197 6 H -0.212 1.212 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.388 5.388 12 C 0.428 3.572 13 O -0.462 6.462 14 N -0.409 5.409 15 C -0.025 4.025 16 C -0.182 4.182 17 C 0.090 3.910 18 H 0.116 0.884 19 C -0.104 4.104 20 C -0.058 4.058 21 C -0.173 4.173 22 C 0.078 3.922 23 F -0.122 7.122 24 C -0.180 4.180 25 C -0.099 4.099 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.225 0.775 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.936 -22.940 -2.114 23.056 hybrid contribution 0.186 1.051 0.008 1.067 sum 1.123 -21.889 -2.107 22.018 Atomic orbital electron populations 1.69958 1.06094 1.26859 1.50442 1.24994 0.94898 0.99410 0.94984 0.86507 0.79859 0.82962 0.78210 1.20555 1.19696 1.21169 1.21049 0.93274 0.90340 1.51285 0.92221 1.19314 0.94229 0.91048 0.97765 1.21608 0.95637 0.80275 1.00647 1.45518 1.09905 1.04972 1.78429 1.15448 0.84849 0.78976 0.77896 1.90938 1.11188 1.85678 1.58441 1.48889 1.08266 1.03972 1.79746 1.22887 0.84622 0.94409 1.00623 1.23489 0.95192 0.98203 1.01362 1.21274 0.92173 0.79914 0.97615 0.88360 1.19878 0.97825 0.95338 0.97322 1.20842 0.94824 0.97868 0.92250 1.21152 0.97135 0.96538 1.02503 1.17752 0.86198 0.95852 0.92443 1.91482 1.53307 1.93623 1.73807 1.21006 0.99477 1.00533 0.96994 1.20732 0.93993 0.96523 0.98691 0.92859 0.96029 0.95998 0.92789 0.92777 0.77471 0.89840 0.90251 0.88941 0.88533 0.85226 0.84893 0.84918 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.35 5.09 -27.89 -0.14 0.20 16 10 C 0.14 3.05 5.61 -4.04 -0.02 3.02 16 11 N -0.74 -13.20 5.56 -65.23 -0.36 -13.56 16 12 C 0.73 12.78 7.41 -86.93 -0.64 12.13 16 13 O -0.58 -12.47 15.00 5.29 0.08 -12.39 16 14 N -0.67 -8.56 3.14 -184.73 -0.58 -9.14 16 15 C 0.10 0.82 8.28 -8.50 -0.07 0.75 16 16 C -0.14 -0.98 8.00 -26.36 -0.21 -1.19 16 17 C 0.19 1.94 4.25 -73.69 -0.31 1.63 16 18 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.10 -1.20 5.07 -104.62 -0.53 -1.73 16 20 C -0.04 -0.54 7.86 -39.59 -0.31 -0.85 16 21 C -0.15 -2.05 10.03 -39.51 -0.40 -2.44 16 22 C 0.10 1.21 7.30 -39.41 -0.29 0.92 16 23 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 24 C -0.16 -1.69 10.03 -39.51 -0.40 -2.09 16 25 C -0.08 -0.79 9.73 -39.59 -0.39 -1.18 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.39 6.20 8.19 -40.82 -0.33 5.86 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.13 1.99 6.08 -52.49 -0.32 1.67 16 37 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -33.17 336.08 -9.43 -42.60 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.27 Total: 2.27 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -4.12 Total: -4.07 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.21 Total: -48.08 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.17 -9.43 -42.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595579004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.515 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds