Wall clock time and date at job start Tue Mar 31 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99896 * 2 1 4 4 H 1.08999 * 109.47338 * 357.31042 * 3 2 1 5 5 C 1.53007 * 109.47349 * 237.31117 * 3 2 1 6 6 S 1.81402 * 109.46858 * 61.73149 * 5 3 2 7 7 C 1.81404 * 102.99729 * 184.90633 * 6 5 3 8 8 C 1.53002 * 109.46916 * 175.09200 * 7 6 5 9 9 C 1.50694 * 115.55198 * 62.09081 * 8 7 6 10 10 H 1.08005 * 120.00585 * 264.76513 * 9 8 7 11 11 C 1.37884 * 119.99855 * 84.76020 * 9 8 7 12 12 N 1.31518 * 119.99879 * 2.04965 * 11 9 8 13 13 Si 1.86793 * 120.00136 * 182.04736 * 11 9 8 14 14 H 1.48499 * 109.47392 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47336 * 120.00414 * 13 11 9 16 16 H 1.48508 * 109.47243 * 240.00122 * 13 11 9 17 17 C 1.53005 * 117.49839 * 276.42497 * 8 7 6 18 18 C 1.52996 * 117.50030 * 207.76579 * 8 7 6 19 19 C 1.50700 * 109.47147 * 117.31492 * 3 2 1 20 20 C 1.38237 * 120.00353 * 39.72302 * 19 3 2 21 21 C 1.38230 * 120.00488 * 179.81294 * 20 19 3 22 22 C 1.38236 * 119.99539 * 0.39906 * 21 20 19 23 23 C 1.38240 * 120.00380 * 359.85674 * 22 21 20 24 24 C 1.38230 * 119.99668 * 359.95654 * 23 22 21 25 25 H 1.09006 * 109.47143 * 296.87644 * 1 2 3 26 26 H 1.08996 * 109.47224 * 56.88125 * 1 2 3 27 27 H 1.09003 * 109.46942 * 176.87969 * 1 2 3 28 28 H 1.08997 * 109.47391 * 181.73088 * 5 3 2 29 29 H 1.09000 * 109.46956 * 301.73360 * 5 3 2 30 30 H 1.08999 * 109.47319 * 295.09172 * 7 6 5 31 31 H 1.08999 * 109.47002 * 55.09793 * 7 6 5 32 32 H 0.96995 * 120.00135 * 185.00705 * 12 11 9 33 33 H 1.09004 * 117.49559 * 0.02562 * 17 8 7 34 34 H 1.09004 * 117.49800 * 145.01664 * 17 8 7 35 35 H 1.08997 * 117.50086 * 214.97815 * 18 8 7 36 36 H 1.09005 * 117.49556 * 359.97438 * 18 8 7 37 37 H 1.08004 * 119.99312 * 0.02562 * 20 19 3 38 38 H 1.07996 * 120.00543 * 180.23230 * 21 20 19 39 39 H 1.08000 * 119.99825 * 179.83354 * 22 21 20 40 40 H 1.07996 * 119.99760 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00232 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2202 2.0549 -0.0482 5 6 2.9293 1.4546 -1.2141 6 16 1.9570 1.2721 -2.7346 7 6 3.2201 1.3268 -4.0355 8 6 2.5659 1.0613 -5.3929 9 6 1.5291 2.0669 -5.8227 10 1 0.4828 1.8795 -5.6311 11 6 1.9162 3.2265 -6.4604 12 7 3.1863 3.4363 -6.7297 13 14 0.6367 4.4994 -6.9419 14 1 -0.7099 4.0283 -6.5297 15 1 0.9392 5.7860 -6.2649 16 1 0.6637 4.6962 -8.4137 17 6 2.3450 -0.3978 -5.7973 18 6 3.4335 0.4309 -6.4841 19 6 2.8101 1.4992 1.2624 20 6 3.5736 0.4613 1.7631 21 6 4.3104 0.6401 2.9189 22 6 4.2772 1.8545 3.5786 23 6 3.5095 2.8908 3.0809 24 6 2.7758 2.7131 1.9230 25 1 -0.3634 0.4646 0.9167 26 1 -0.3633 0.5615 -0.8607 27 1 -0.3633 -1.0262 -0.0559 28 1 3.3964 2.4393 -1.1974 29 1 3.7013 0.6857 -1.1819 30 1 3.6898 2.3104 -4.0448 31 1 3.9752 0.5653 -3.8410 32 1 3.4677 4.2822 -7.1120 33 1 2.6654 -1.1684 -5.0961 34 1 1.4500 -0.6301 -6.3745 35 1 3.2542 0.7433 -7.5128 36 1 4.4706 0.2058 -6.2350 37 1 3.5971 -0.4884 1.2492 38 1 4.9098 -0.1695 3.3080 39 1 4.8507 1.9934 4.4831 40 1 3.4834 3.8393 3.5966 41 1 2.1764 3.5228 1.5338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596360411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:06 Heat of formation + Delta-G solvation = -1.239488 kcal Electronic energy + Delta-G solvation = -20507.148784 eV Core-core repulsion = 17478.973284 eV Total energy + Delta-G solvation = -3028.175500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.63898 -37.56765 -36.51597 -32.78987 -31.90541 -30.98543 -29.34130 -27.62322 -26.41059 -25.30548 -23.77599 -22.59915 -21.05399 -20.92269 -19.14818 -17.25122 -16.56698 -16.28776 -15.81967 -15.24457 -14.73463 -14.60586 -14.56045 -14.29857 -13.78580 -13.46076 -13.37619 -13.23936 -12.97630 -12.77030 -12.29959 -11.95058 -11.81015 -11.43953 -11.30925 -11.09692 -10.93851 -10.85929 -10.80308 -10.44501 -10.13397 -9.70107 -9.43948 -9.24172 -9.00608 -8.88372 -8.83039 -8.40170 -7.95523 -6.72848 -6.01726 -4.07450 1.20385 1.32094 2.41767 3.30171 3.38552 3.43800 3.54700 3.65144 3.82748 4.43522 4.73638 4.81920 4.90637 5.05361 5.11972 5.18539 5.27440 5.41696 5.42771 5.47038 5.48887 5.61789 5.64063 5.85670 5.86373 5.95813 6.00438 6.02065 6.24204 6.35609 6.41310 6.43586 6.48305 6.57195 6.77974 6.84945 6.89625 7.11983 7.26929 7.42519 7.56150 7.90505 8.42754 8.94334 9.58353 11.07043 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.003772 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.645839 B = 7421.314180 C = 7732.227017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.150 3.850 4 H 0.079 0.921 5 C -0.108 4.108 6 S -0.232 6.232 7 C -0.026 4.026 8 C 0.054 3.946 9 C -0.482 4.482 10 H 0.062 0.938 11 C 0.071 3.929 12 N -0.883 5.883 13 Si 0.888 3.112 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.205 4.205 18 C -0.145 4.145 19 C -0.093 4.093 20 C -0.090 4.090 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.110 4.110 25 H 0.034 0.966 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.594 -3.466 17.994 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C 0.091 3.909 4 H 0.097 0.903 5 C -0.257 4.257 6 S -0.003 6.003 7 C -0.174 4.174 8 C 0.052 3.948 9 C -0.520 4.520 10 H 0.080 0.920 11 C -0.131 4.131 12 N -0.520 5.520 13 Si 0.716 3.284 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.242 4.242 18 C -0.185 4.185 19 C -0.094 4.094 20 C -0.108 4.108 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.129 4.129 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.286 -3.630 17.751 18.120 hybrid contribution 0.752 1.219 -0.161 1.441 sum 0.466 -2.411 17.590 17.761 Atomic orbital electron populations 1.22833 0.80782 1.02860 0.99900 1.87903 1.19883 1.26252 1.94725 1.20540 0.94171 0.86399 0.89799 0.90313 1.23715 1.01386 1.04428 0.96159 1.86811 1.18344 1.96896 0.98255 1.23051 0.95807 1.02962 0.95603 1.18439 0.97476 0.90307 0.88590 1.20414 0.92098 1.02898 1.36592 0.91996 1.24955 0.95260 0.98147 0.94764 1.70010 1.14749 1.23813 1.43438 0.86588 0.82193 0.81592 0.78013 1.19588 1.20985 1.21150 1.23009 1.00767 0.95776 1.04663 1.22567 0.93123 1.03801 0.99036 1.20131 0.98591 0.94353 0.96371 1.21039 0.95121 0.98984 0.95704 1.21174 0.99689 0.97510 0.95960 1.21159 0.99303 0.93609 0.99927 1.21091 0.97551 0.99029 0.96489 1.21058 0.99642 0.96783 0.95389 0.94714 0.92930 0.89705 0.89830 0.90326 0.90316 0.93414 0.93167 0.91496 0.90376 0.89606 0.92054 0.85458 0.86114 0.86281 0.86068 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.70 101.05 1.08 1.49 16 2 O -0.37 -5.43 9.31 -35.23 -0.33 -5.76 16 3 C 0.15 2.11 2.48 -27.88 -0.07 2.04 16 4 H 0.08 1.08 7.47 -51.93 -0.39 0.69 16 5 C -0.11 -1.75 5.63 37.16 0.21 -1.54 16 6 S -0.23 -4.67 21.02 -107.50 -2.26 -6.93 16 7 C -0.03 -0.58 5.81 37.16 0.22 -0.37 16 8 C 0.05 1.32 1.43 -155.66 -0.22 1.09 16 9 C -0.48 -13.10 8.38 -34.44 -0.29 -13.39 16 10 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 11 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 12 N -0.88 -24.78 12.72 55.43 0.70 -24.08 16 13 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 C -0.20 -4.56 9.95 -26.69 -0.27 -4.83 16 18 C -0.15 -3.43 9.24 -26.70 -0.25 -3.68 16 19 C -0.09 -1.18 4.97 -104.62 -0.52 -1.70 16 20 C -0.09 -1.10 9.36 -39.58 -0.37 -1.47 16 21 C -0.13 -1.31 10.05 -39.59 -0.40 -1.70 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.11 -1.26 9.67 -39.58 -0.38 -1.64 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 30 H 0.08 1.91 8.14 -51.92 -0.42 1.49 16 31 H 0.05 1.00 8.11 -51.92 -0.42 0.57 16 32 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.13 1.55 7.77 -52.48 -0.41 1.15 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.12 1.24 8.04 -52.49 -0.42 0.81 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -29.08 360.21 -10.31 -39.38 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.68 Total: 2.81 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -2.15 Total: -27.06 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.70 Total: -24.08 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.33 Total: -5.76 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -2.26 Total: -6.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.08 -10.31 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596360411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.144 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds