Wall clock time and date at job start Tue Mar 31 2020 06:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99896 * 2 1 4 4 H 1.08999 * 109.47338 * 357.31042 * 3 2 1 5 5 C 1.53007 * 109.47349 * 237.31117 * 3 2 1 6 6 S 1.81402 * 109.46858 * 61.73149 * 5 3 2 7 7 C 1.81404 * 102.99729 * 184.90633 * 6 5 3 8 8 C 1.53002 * 109.46916 * 175.09200 * 7 6 5 9 9 C 1.50694 * 115.55198 * 62.09081 * 8 7 6 10 10 H 1.08005 * 120.00585 * 264.76513 * 9 8 7 11 11 C 1.37884 * 119.99855 * 84.76020 * 9 8 7 12 12 N 1.31518 * 119.99879 * 2.04965 * 11 9 8 13 13 Si 1.86793 * 120.00136 * 182.04736 * 11 9 8 14 14 H 1.48499 * 109.47392 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47336 * 120.00414 * 13 11 9 16 16 H 1.48508 * 109.47243 * 240.00122 * 13 11 9 17 17 C 1.53005 * 117.49839 * 276.42497 * 8 7 6 18 18 C 1.52996 * 117.50030 * 207.76579 * 8 7 6 19 19 C 1.50700 * 109.47147 * 117.31492 * 3 2 1 20 20 C 1.38237 * 120.00353 * 39.72302 * 19 3 2 21 21 C 1.38230 * 120.00488 * 179.81294 * 20 19 3 22 22 C 1.38236 * 119.99539 * 0.39906 * 21 20 19 23 23 C 1.38240 * 120.00380 * 359.85674 * 22 21 20 24 24 C 1.38230 * 119.99668 * 359.95654 * 23 22 21 25 25 H 1.09006 * 109.47143 * 296.87644 * 1 2 3 26 26 H 1.08996 * 109.47224 * 56.88125 * 1 2 3 27 27 H 1.09003 * 109.46942 * 176.87969 * 1 2 3 28 28 H 1.08997 * 109.47391 * 181.73088 * 5 3 2 29 29 H 1.09000 * 109.46956 * 301.73360 * 5 3 2 30 30 H 1.08999 * 109.47319 * 295.09172 * 7 6 5 31 31 H 1.08999 * 109.47002 * 55.09793 * 7 6 5 32 32 H 0.96995 * 120.00135 * 185.00705 * 12 11 9 33 33 H 1.09004 * 117.49559 * 0.02562 * 17 8 7 34 34 H 1.09004 * 117.49800 * 145.01664 * 17 8 7 35 35 H 1.08997 * 117.50086 * 214.97815 * 18 8 7 36 36 H 1.09005 * 117.49556 * 359.97438 * 18 8 7 37 37 H 1.08004 * 119.99312 * 0.02562 * 20 19 3 38 38 H 1.07996 * 120.00543 * 180.23230 * 21 20 19 39 39 H 1.08000 * 119.99825 * 179.83354 * 22 21 20 40 40 H 1.07996 * 119.99760 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00232 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2202 2.0549 -0.0482 5 6 2.9293 1.4546 -1.2141 6 16 1.9570 1.2721 -2.7346 7 6 3.2201 1.3268 -4.0355 8 6 2.5659 1.0613 -5.3929 9 6 1.5291 2.0669 -5.8227 10 1 0.4828 1.8795 -5.6311 11 6 1.9162 3.2265 -6.4604 12 7 3.1863 3.4363 -6.7297 13 14 0.6367 4.4994 -6.9419 14 1 -0.7099 4.0283 -6.5297 15 1 0.9392 5.7860 -6.2649 16 1 0.6637 4.6962 -8.4137 17 6 2.3450 -0.3978 -5.7973 18 6 3.4335 0.4309 -6.4841 19 6 2.8101 1.4992 1.2624 20 6 3.5736 0.4613 1.7631 21 6 4.3104 0.6401 2.9189 22 6 4.2772 1.8545 3.5786 23 6 3.5095 2.8908 3.0809 24 6 2.7758 2.7131 1.9230 25 1 -0.3634 0.4646 0.9167 26 1 -0.3633 0.5615 -0.8607 27 1 -0.3633 -1.0262 -0.0559 28 1 3.3964 2.4393 -1.1974 29 1 3.7013 0.6857 -1.1819 30 1 3.6898 2.3104 -4.0448 31 1 3.9752 0.5653 -3.8410 32 1 3.4677 4.2822 -7.1120 33 1 2.6654 -1.1684 -5.0961 34 1 1.4500 -0.6301 -6.3745 35 1 3.2542 0.7433 -7.5128 36 1 4.4706 0.2058 -6.2350 37 1 3.5971 -0.4884 1.2492 38 1 4.9098 -0.1695 3.3080 39 1 4.8507 1.9934 4.4831 40 1 3.4834 3.8393 3.5966 41 1 2.1764 3.5228 1.5338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596360411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:05 Heat of formation + Delta-G solvation = -13.966351 kcal Electronic energy + Delta-G solvation = -20507.700662 eV Core-core repulsion = 17478.973284 eV Total energy + Delta-G solvation = -3028.727378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.124 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54097 -38.58239 -38.38865 -33.98398 -33.80158 -31.78729 -30.39389 -29.40945 -27.51000 -27.30151 -24.82476 -23.41013 -22.91247 -21.90320 -21.05457 -18.20707 -18.13568 -17.62365 -16.98893 -16.64060 -16.47282 -15.89173 -15.65337 -15.42863 -15.30219 -14.98371 -14.72556 -14.25183 -14.17820 -13.90874 -13.70206 -13.63903 -13.05485 -12.88671 -12.84879 -12.80565 -12.34819 -12.23464 -12.11572 -11.96729 -11.76899 -11.46135 -10.98184 -10.71090 -10.64509 -10.41055 -9.84922 -9.81420 -9.69301 -8.35804 -8.09820 -6.20429 0.34307 0.50792 0.91957 1.39500 1.42729 1.53556 1.94453 2.44160 2.71503 2.87794 3.18816 3.54009 3.79017 3.91944 3.97886 4.12937 4.18924 4.20731 4.29672 4.33944 4.40670 4.50337 4.59921 4.60438 4.64942 4.69848 4.71785 4.78487 4.89903 4.93892 5.00659 5.05794 5.16632 5.23946 5.56330 5.57267 5.61883 5.62329 5.64954 5.78130 6.10366 6.22481 6.39474 6.83760 7.47382 8.98479 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.003772 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.645839 B = 7421.314180 C = 7732.227017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.156 3.844 4 H 0.079 0.921 5 C -0.093 4.093 6 S -0.254 6.254 7 C -0.018 4.018 8 C 0.028 3.972 9 C -0.493 4.493 10 H 0.047 0.953 11 C 0.029 3.971 12 N -0.908 5.908 13 Si 0.944 3.056 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.282 1.282 17 C -0.183 4.183 18 C -0.148 4.148 19 C -0.109 4.109 20 C -0.106 4.106 21 C -0.129 4.129 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.121 4.121 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.259 0.741 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 -3.402 20.102 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.097 3.903 4 H 0.097 0.903 5 C -0.241 4.241 6 S -0.025 6.025 7 C -0.167 4.167 8 C 0.027 3.973 9 C -0.531 4.531 10 H 0.066 0.934 11 C -0.171 4.171 12 N -0.546 5.546 13 Si 0.770 3.230 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.208 1.208 17 C -0.220 4.220 18 C -0.188 4.188 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.140 4.140 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.204 -3.574 19.850 20.170 hybrid contribution 0.732 1.172 -0.715 1.556 sum 0.528 -2.402 19.135 19.293 Atomic orbital electron populations 1.22941 0.79750 1.03787 1.00109 1.87878 1.21069 1.26616 1.94783 1.20461 0.93955 0.86274 0.89592 0.90297 1.23767 1.01267 1.04597 0.94507 1.86778 1.18998 1.96905 0.99838 1.22786 0.96403 1.01775 0.95728 1.18544 0.97773 0.91210 0.89773 1.20568 0.92031 1.03902 1.36616 0.93441 1.25578 0.96867 0.99798 0.94870 1.70096 1.16074 1.24230 1.44208 0.85714 0.80086 0.79461 0.77697 1.19439 1.20549 1.20795 1.22986 1.00007 0.95026 1.04024 1.22474 0.94177 1.04443 0.97706 1.20033 0.99484 0.95373 0.96190 1.21102 0.95947 0.98668 0.96702 1.21455 0.99332 0.98630 0.95278 1.21544 0.98786 0.92976 1.00521 1.21432 0.96758 1.00243 0.95919 1.21252 1.00186 0.96490 0.96024 0.92997 0.94361 0.88301 0.89540 0.90215 0.92947 0.92082 0.93172 0.89331 0.90530 0.91858 0.90706 0.86226 0.84080 0.83498 0.83665 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.70 113.37 1.21 1.94 16 2 O -0.38 -11.07 9.31 -148.98 -1.39 -12.46 16 3 C 0.16 4.31 2.48 29.85 0.07 4.39 16 4 H 0.08 2.13 7.47 -2.39 -0.02 2.11 16 5 C -0.09 -2.96 5.63 71.98 0.41 -2.56 16 6 S -0.25 -10.25 21.02 -56.49 -1.19 -11.44 16 7 C -0.02 -0.83 5.81 71.98 0.42 -0.42 16 8 C 0.03 1.41 1.43 -52.93 -0.08 1.33 16 9 C -0.49 -27.14 8.38 25.60 0.21 -26.93 16 10 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 11 C 0.03 1.59 5.43 84.66 0.46 2.05 16 12 N -0.91 -51.64 12.72 21.45 0.27 -51.36 16 13 Si 0.94 43.90 29.54 68.60 2.03 45.93 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 C -0.18 -8.04 9.95 30.62 0.30 -7.74 16 18 C -0.15 -7.02 9.24 30.62 0.28 -6.74 16 19 C -0.11 -2.66 4.97 -19.86 -0.10 -2.76 16 20 C -0.11 -2.45 9.36 22.27 0.21 -2.24 16 21 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 22 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 23 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 24 C -0.12 -2.56 9.67 22.27 0.22 -2.34 16 25 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.06 2.53 8.11 -2.39 -0.02 2.51 16 32 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 33 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 35 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 37 H 0.12 2.87 7.77 -2.91 -0.02 2.84 16 38 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.13 2.44 8.04 -2.91 -0.02 2.42 16 Total: -1.00 -61.92 360.21 5.00 -56.92 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.98 Total: 20.29 kcal Atomic # 6 Polarization: -52.18 SS G_CDS: 4.29 Total: -47.88 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.27 Total: -51.36 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.39 Total: -12.46 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -10.25 SS G_CDS: -1.19 Total: -11.44 kcal Total: -61.92 5.00 -56.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596360411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.958 kcal (2) G-P(sol) polarization free energy of solvation -61.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds