Wall clock time and date at job start Tue Mar 31 2020 06:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47265 * 93.35951 * 3 2 1 5 5 C 1.42897 * 114.00227 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46952 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.47049 * 65.00660 * 6 5 4 8 8 C 1.34779 * 119.99738 * 179.97438 * 7 6 5 9 9 O 1.21589 * 120.00349 * 359.97438 * 8 7 6 10 10 N 1.34787 * 119.99663 * 179.97438 * 8 7 6 11 11 C 1.40196 * 119.99563 * 179.97438 * 10 8 7 12 12 C 1.40395 * 125.97533 * 359.97438 * 11 10 8 13 13 C 1.35243 * 107.86535 * 179.71691 * 12 11 10 14 14 N 1.34960 * 107.86064 * 0.42509 * 13 12 11 15 15 C 1.46500 * 125.97985 * 179.83521 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71356 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31213 * 125.96849 * 179.97438 * 11 10 8 25 25 H 4.38447 * 5.44445 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.47833 * 333.36238 * 3 2 1 27 27 H 1.09001 * 109.47305 * 213.35652 * 3 2 1 28 28 H 1.08998 * 109.47250 * 60.00416 * 5 4 3 29 29 H 1.08999 * 109.47377 * 300.00058 * 5 4 3 30 30 H 1.08994 * 109.47616 * 304.99959 * 6 5 4 31 31 H 1.09001 * 109.47145 * 185.00244 * 6 5 4 32 32 H 0.96998 * 120.00159 * 359.97438 * 7 6 5 33 33 H 0.96998 * 119.99666 * 359.97438 * 10 8 7 34 34 H 1.08003 * 126.06887 * 0.02562 * 12 11 10 35 35 H 1.08007 * 126.06985 * 180.26350 * 13 12 11 36 36 H 1.09004 * 109.47078 * 4.72118 * 15 14 13 37 37 H 1.08993 * 109.47364 * 244.71890 * 15 14 13 38 38 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.0798 -1.3450 5 6 4.5468 0.0877 -1.4576 6 6 4.9412 0.1738 -2.9334 7 7 4.5021 1.4592 -3.4820 8 6 4.7434 1.7583 -4.7738 9 8 5.3260 0.9614 -5.4838 10 7 4.3390 2.9408 -5.2787 11 6 4.5905 3.2520 -6.6223 12 6 5.2502 2.4301 -7.5498 13 6 5.2859 3.0848 -8.7327 14 7 4.6819 4.2796 -8.5628 15 6 4.5035 5.3078 -9.5911 16 6 3.0420 5.6578 -9.7033 17 1 2.3185 5.1641 -9.0715 18 6 2.6285 6.6083 -10.6125 19 7 3.5102 7.2133 -11.3781 20 14 0.8170 7.0427 -10.7510 21 1 0.6369 8.0891 -11.7892 22 1 0.0451 5.8317 -11.1295 23 1 0.3289 7.5525 -9.4445 24 7 4.2504 4.3626 -7.2328 25 1 -1.0500 0.0002 0.0000 26 1 3.0098 -0.9177 0.4607 27 1 3.0090 0.8592 0.5651 28 1 4.9504 -0.8287 -1.0270 29 1 4.9489 0.9482 -0.9229 30 1 4.4662 -0.6378 -3.4844 31 1 6.0241 0.0903 -3.0255 32 1 4.0377 2.0951 -2.9155 33 1 3.8739 3.5763 -4.7123 34 1 5.6529 1.4471 -7.3547 35 1 5.7227 2.7177 -9.6497 36 1 4.8610 4.9296 -10.5489 37 1 5.0703 6.1976 -9.3174 38 1 4.4509 6.9879 -11.3060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752640126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:16 Heat of formation + Delta-G solvation = 67.626354 kcal Electronic energy + Delta-G solvation = -21655.210362 eV Core-core repulsion = 18116.020645 eV Total energy + Delta-G solvation = -3539.189716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73798 -39.65374 -38.60215 -35.30307 -34.62428 -33.67191 -33.45993 -30.99485 -29.69394 -29.27190 -27.17096 -26.14052 -23.57643 -22.80889 -21.60273 -20.53484 -19.88253 -18.91613 -18.01968 -17.35691 -17.14368 -16.90281 -16.48832 -15.63102 -15.49584 -15.23761 -14.68316 -14.24957 -14.09051 -13.76229 -13.61254 -13.19723 -12.89926 -12.75460 -12.38589 -12.19999 -11.91649 -11.78411 -11.13137 -10.98758 -10.94690 -10.78766 -10.41148 -10.14181 -10.12789 -10.05663 -9.69020 -9.25822 -8.94637 -8.55284 -8.13200 -7.42659 -6.55168 -4.28935 2.05594 2.38513 2.38701 2.63816 3.10196 3.39830 3.40499 3.41693 3.55997 3.61866 3.83332 4.04943 4.30195 4.44017 4.50633 4.67190 4.71223 4.85304 4.91708 5.18518 5.31383 5.44497 5.49101 5.56927 5.76266 6.19336 6.26949 6.47194 6.51455 6.57764 6.69445 6.81123 7.02076 7.15109 7.47184 7.67002 7.89186 7.95235 8.38258 8.59904 8.60382 8.67691 9.39198 10.82282 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.002705 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.312243 B =10347.096802 C =11690.101259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.200 4.200 3 C 0.174 3.826 4 O -0.379 6.379 5 C 0.049 3.951 6 C 0.144 3.856 7 N -0.740 5.740 8 C 0.714 3.286 9 O -0.570 6.570 10 N -0.644 5.644 11 C 0.278 3.722 12 C -0.284 4.284 13 C 0.050 3.950 14 N -0.320 5.320 15 C 0.250 3.750 16 C -0.607 4.607 17 H 0.063 0.937 18 C 0.022 3.978 19 N -0.906 5.906 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 N -0.306 5.306 25 H 0.222 0.778 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.400 0.600 33 H 0.407 0.593 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.046 0.954 37 H 0.034 0.966 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 -14.316 22.980 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.200 4.200 3 C 0.098 3.902 4 O -0.299 6.299 5 C -0.028 4.028 6 C 0.019 3.981 7 N -0.398 5.398 8 C 0.413 3.587 9 O -0.445 6.445 10 N -0.294 5.294 11 C 0.024 3.976 12 C -0.315 4.315 13 C -0.100 4.100 14 N -0.101 5.101 15 C 0.132 3.868 16 C -0.645 4.645 17 H 0.081 0.919 18 C -0.182 4.182 19 N -0.541 5.541 20 Si 0.904 3.096 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.212 1.212 24 N -0.137 5.137 25 H 0.239 0.761 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.234 0.766 33 H 0.242 0.758 34 H 0.180 0.820 35 H 0.184 0.816 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.291 -12.869 21.390 24.965 hybrid contribution 0.957 -1.135 1.535 2.135 sum 1.248 -14.004 22.925 26.893 Atomic orbital electron populations 1.25045 0.95989 1.00389 0.97112 1.22496 0.93919 1.01034 1.02519 1.19061 0.84871 1.01508 0.84736 1.88039 1.21164 1.95316 1.25374 1.22864 0.81193 1.01787 0.96910 1.21225 1.00073 0.85576 0.91200 1.44913 1.64277 1.20632 1.09930 1.15605 0.79690 0.81469 0.81926 1.90863 1.46438 1.49081 1.58146 1.41378 1.60838 1.18368 1.08766 1.18789 1.00072 0.94377 0.84355 1.21527 1.14259 1.04266 0.91453 1.22552 0.99776 0.87791 0.99870 1.48749 1.40502 1.13973 1.06924 1.19738 0.99624 0.84746 0.82725 1.22113 0.91279 1.26513 1.24602 0.91854 1.25921 1.07140 0.92821 0.92349 1.70850 1.03347 1.41455 1.38459 0.83420 0.73224 0.76487 0.76487 1.20550 1.21240 1.21156 1.77343 1.25056 1.19800 0.91469 0.76121 0.90734 0.90712 0.90956 0.92011 0.90396 0.89561 0.76614 0.75820 0.82025 0.81557 0.93647 0.94833 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 19.25 29.55 0.57 -0.72 16 2 C -0.20 -1.71 13.73 -37.13 -0.51 -2.22 16 3 C 0.17 1.09 6.41 34.37 0.22 1.31 16 4 O -0.38 -3.12 10.25 -35.23 -0.36 -3.48 16 5 C 0.05 0.27 6.07 37.16 0.23 0.50 16 6 C 0.14 1.20 6.06 -4.04 -0.02 1.18 16 7 N -0.74 -7.75 5.51 -65.22 -0.36 -8.11 16 8 C 0.71 10.86 8.53 -86.91 -0.74 10.12 16 9 O -0.57 -10.49 13.47 5.29 0.07 -10.42 16 10 N -0.64 -10.45 5.46 -15.50 -0.08 -10.54 16 11 C 0.28 5.81 8.11 -154.36 -1.25 4.56 16 12 C -0.28 -5.85 9.61 -39.84 -0.38 -6.23 16 13 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 14 N -0.32 -7.67 3.67 -62.56 -0.23 -7.90 16 15 C 0.25 6.45 5.57 -5.19 -0.03 6.42 16 16 C -0.61 -17.36 9.24 -34.44 -0.32 -17.67 16 17 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 18 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 19 N -0.91 -26.65 13.65 55.43 0.76 -25.89 16 20 Si 1.08 25.25 29.90 -169.99 -5.08 20.17 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 N -0.31 -7.28 12.42 31.44 0.39 -6.89 16 25 H 0.22 0.93 7.80 -54.09 -0.42 0.51 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.40 3.29 8.49 -40.82 -0.35 2.95 16 33 H 0.41 5.42 8.84 -40.82 -0.36 5.06 16 34 H 0.16 3.26 5.91 -52.48 -0.31 2.95 16 35 H 0.17 2.80 8.06 -52.48 -0.42 2.38 16 36 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 37 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 38 H 0.27 7.68 7.22 -40.82 -0.29 7.39 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -36.57 344.04 -6.98 -43.55 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.73 Total: 5.74 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.54 Total: -1.40 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.47 Total: -59.34 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.29 Total: -13.90 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.57 -6.98 -43.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752640126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.176 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds