Wall clock time and date at job start Tue Mar 31 2020 06:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99989 * 2 1 4 4 H 1.48494 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46834 * 299.99364 * 3 2 1 6 6 H 1.48503 * 109.47252 * 59.99144 * 3 2 1 7 7 C 1.37874 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00034 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47283 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00029 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00086 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99784 * 179.97438 * 11 10 9 14 14 N 1.46901 * 109.46982 * 179.97438 * 13 11 10 15 15 C 1.46900 * 111.00188 * 185.36659 * 14 13 11 16 16 C 1.50704 * 115.54625 * 294.29398 * 15 14 13 17 17 C 1.38218 * 120.01490 * 93.93946 * 16 15 14 18 18 C 1.38223 * 120.02464 * 180.02562 * 17 16 15 19 19 C 1.38264 * 120.05124 * 0.02562 * 18 17 16 20 20 C 1.38173 * 120.02843 * 359.97438 * 19 18 17 21 21 C 1.38444 * 120.01089 * 273.95830 * 16 15 14 22 22 F 1.35098 * 120.02401 * 359.96371 * 21 16 15 23 23 C 1.52993 * 117.49935 * 79.96152 * 15 14 13 24 24 C 1.52993 * 117.49913 * 148.62396 * 15 14 13 25 25 H 0.97002 * 120.00510 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47123 * 59.99989 * 9 7 2 27 27 H 1.09000 * 109.46922 * 299.99764 * 9 7 2 28 28 H 0.96999 * 120.00025 * 359.97438 * 10 9 7 29 29 H 1.09000 * 109.47005 * 59.99883 * 13 11 10 30 30 H 1.09000 * 109.47238 * 299.99537 * 13 11 10 31 31 H 1.00899 * 110.99946 * 61.41166 * 14 13 11 32 32 H 1.08001 * 119.98531 * 0.04026 * 17 16 15 33 33 H 1.08002 * 119.96917 * 180.27465 * 18 17 16 34 34 H 1.08003 * 119.98003 * 179.97438 * 19 18 17 35 35 H 1.07996 * 120.01134 * 179.97438 * 20 19 18 36 36 H 1.09002 * 117.49849 * 215.00131 * 23 15 14 37 37 H 1.08997 * 117.50159 * 0.02792 * 23 15 14 38 38 H 1.08998 * 117.50538 * 359.97235 * 24 15 14 39 39 H 1.09009 * 117.49828 * 144.99820 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5614 -5.1050 0.0000 13 6 2.7332 -6.0287 -0.0006 14 7 1.9987 -7.3010 -0.0005 15 6 2.9181 -8.4396 0.1273 16 6 3.8586 -8.6487 -1.0315 17 6 5.1273 -8.1011 -0.9997 18 6 5.9900 -8.2923 -2.0627 19 6 5.5848 -9.0308 -3.1591 20 6 4.3170 -9.5791 -3.1932 21 6 3.4520 -9.3889 -2.1286 22 9 2.2123 -9.9248 -2.1606 23 6 3.4360 -8.7758 1.5270 24 6 2.4043 -9.6843 0.8536 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1567 -3.4354 0.0002 29 1 3.3599 -5.9713 0.8894 30 1 3.3598 -5.9707 -0.8906 31 1 1.4273 -7.3886 -0.8274 32 1 5.4448 -7.5239 -0.1439 33 1 6.9827 -7.8678 -2.0349 34 1 6.2596 -9.1791 -3.9892 35 1 4.0006 -10.1555 -4.0499 36 1 4.4570 -9.1483 1.6099 37 1 3.0943 -8.1525 2.3533 38 1 1.3844 -9.6583 1.2372 39 1 2.7467 -10.6545 0.4933 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775452333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:10 Heat of formation + Delta-G solvation = -30.844462 kcal Electronic energy + Delta-G solvation = -22569.090381 eV Core-core repulsion = 19005.710688 eV Total energy + Delta-G solvation = -3563.379693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.04790 -39.95099 -38.70681 -37.43183 -34.18966 -33.08766 -32.27803 -31.15748 -30.59991 -27.92151 -25.76769 -23.67549 -23.32992 -22.33995 -22.05301 -20.02356 -19.63516 -17.85989 -17.29857 -16.69787 -16.43426 -15.91633 -15.68688 -15.49941 -15.22983 -14.84464 -14.51241 -14.39041 -14.27003 -13.60874 -13.40952 -13.08788 -12.81975 -12.57523 -12.33063 -12.11132 -11.92535 -11.58261 -11.57879 -11.40195 -10.95198 -10.90700 -10.78814 -10.31623 -10.13354 -9.37465 -9.31072 -9.06435 -8.99509 -8.73168 -8.47802 -7.85206 -6.16059 -4.22988 0.83408 0.89465 3.23503 3.25426 3.30415 3.33428 3.40984 3.46898 3.73965 4.03716 4.19946 4.28018 4.46024 4.50522 4.65177 4.80149 4.95519 5.06469 5.15954 5.20033 5.24598 5.43271 5.51652 5.53159 5.56960 5.62885 5.74364 5.81625 5.85776 5.99721 6.07838 6.10186 6.58005 6.88605 7.30090 7.34374 7.46601 7.53663 7.68414 7.98030 8.64942 8.79931 9.13755 9.43852 10.94223 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.003223 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.458838 B = 8686.151238 C = 9228.987306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.714 5.714 11 C 0.497 3.503 12 O -0.542 6.542 13 C 0.041 3.959 14 N -0.621 5.621 15 C 0.065 3.935 16 C -0.114 4.114 17 C -0.077 4.077 18 C -0.131 4.131 19 C -0.091 4.091 20 C -0.158 4.158 21 C 0.112 3.888 22 F -0.133 7.133 23 C -0.152 4.152 24 C -0.144 4.144 25 H 0.265 0.735 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.389 0.611 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.355 0.645 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.028 -20.540 -3.104 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.364 5.364 11 C 0.281 3.719 12 O -0.420 6.420 13 C -0.091 4.091 14 N -0.251 5.251 15 C -0.027 4.027 16 C -0.117 4.117 17 C -0.096 4.096 18 C -0.149 4.149 19 C -0.109 4.109 20 C -0.176 4.176 21 C 0.092 3.908 22 F -0.111 7.111 23 C -0.189 4.189 24 C -0.181 4.181 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.222 0.778 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.175 0.825 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.746 -20.513 -2.419 24.272 hybrid contribution 1.077 1.015 -1.039 1.808 sum 13.823 -19.498 -3.458 24.150 Atomic orbital electron populations 1.69986 1.06113 1.27182 1.48980 1.24958 0.94908 0.99460 0.94730 0.86364 0.79810 0.82991 0.77756 1.19645 1.20806 1.20783 1.21265 0.93278 0.90462 1.53079 0.91869 1.19094 0.88304 0.81923 0.97716 1.46429 1.11038 1.06059 1.72827 1.20325 0.89506 0.84187 0.77920 1.90671 1.16651 1.84707 1.49956 1.21824 0.95764 0.89150 1.02372 1.60119 1.19767 0.98426 1.46830 1.19921 0.96543 0.95246 0.90983 1.19873 0.96121 1.00067 0.95647 1.20991 0.91964 0.97780 0.98871 1.21240 1.00280 0.99576 0.93836 1.21044 0.95176 0.96320 0.98376 1.21179 0.94626 1.03359 0.98469 1.17605 0.80876 0.96844 0.95450 1.91523 1.39101 1.83898 1.96593 1.23129 0.98923 1.02707 0.94177 1.23080 1.00278 0.92956 1.01822 0.92500 0.95635 0.95515 0.77845 0.88514 0.92727 0.82487 0.84914 0.85158 0.85032 0.84722 0.88619 0.87574 0.87467 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 10 N -0.71 -15.16 5.55 -61.47 -0.34 -15.50 16 11 C 0.50 10.09 7.88 -10.98 -0.09 10.01 16 12 O -0.54 -13.41 16.32 5.55 0.09 -13.32 16 13 C 0.04 0.61 5.80 -4.97 -0.03 0.58 16 14 N -0.62 -9.11 6.13 -102.40 -0.63 -9.73 16 15 C 0.07 0.76 1.48 -132.76 -0.20 0.56 16 16 C -0.11 -1.23 4.66 -104.55 -0.49 -1.72 16 17 C -0.08 -0.70 8.89 -39.59 -0.35 -1.05 16 18 C -0.13 -1.02 10.04 -39.58 -0.40 -1.42 16 19 C -0.09 -0.70 10.04 -39.60 -0.40 -1.09 16 20 C -0.16 -1.43 10.03 -39.52 -0.40 -1.83 16 21 C 0.11 1.25 7.17 -39.42 -0.28 0.96 16 22 F -0.13 -1.65 16.42 2.25 0.04 -1.61 16 23 C -0.15 -1.50 9.86 -26.70 -0.26 -1.76 16 24 C -0.14 -1.52 9.66 -26.70 -0.26 -1.78 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 29 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.05 0.73 7.37 -51.93 -0.38 0.35 16 31 H 0.35 5.63 8.71 -39.29 -0.34 5.29 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -32.92 343.71 -8.78 -41.70 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.25 Total: 8.27 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -3.59 Total: -5.30 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.23 Total: -50.78 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.92 -8.78 -41.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775452333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.860 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds