Wall clock time and date at job start Tue Mar 31 2020 06:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99989 * 2 1 4 4 H 1.48494 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46834 * 299.99364 * 3 2 1 6 6 H 1.48503 * 109.47252 * 59.99144 * 3 2 1 7 7 C 1.37874 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00034 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47283 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00029 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00086 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99784 * 179.97438 * 11 10 9 14 14 N 1.46901 * 109.46982 * 179.97438 * 13 11 10 15 15 C 1.46900 * 111.00188 * 185.36659 * 14 13 11 16 16 C 1.50704 * 115.54625 * 294.29398 * 15 14 13 17 17 C 1.38218 * 120.01490 * 93.93946 * 16 15 14 18 18 C 1.38223 * 120.02464 * 180.02562 * 17 16 15 19 19 C 1.38264 * 120.05124 * 0.02562 * 18 17 16 20 20 C 1.38173 * 120.02843 * 359.97438 * 19 18 17 21 21 C 1.38444 * 120.01089 * 273.95830 * 16 15 14 22 22 F 1.35098 * 120.02401 * 359.96371 * 21 16 15 23 23 C 1.52993 * 117.49935 * 79.96152 * 15 14 13 24 24 C 1.52993 * 117.49913 * 148.62396 * 15 14 13 25 25 H 0.97002 * 120.00510 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47123 * 59.99989 * 9 7 2 27 27 H 1.09000 * 109.46922 * 299.99764 * 9 7 2 28 28 H 0.96999 * 120.00025 * 359.97438 * 10 9 7 29 29 H 1.09000 * 109.47005 * 59.99883 * 13 11 10 30 30 H 1.09000 * 109.47238 * 299.99537 * 13 11 10 31 31 H 1.00899 * 110.99946 * 61.41166 * 14 13 11 32 32 H 1.08001 * 119.98531 * 0.04026 * 17 16 15 33 33 H 1.08002 * 119.96917 * 180.27465 * 18 17 16 34 34 H 1.08003 * 119.98003 * 179.97438 * 19 18 17 35 35 H 1.07996 * 120.01134 * 179.97438 * 20 19 18 36 36 H 1.09002 * 117.49849 * 215.00131 * 23 15 14 37 37 H 1.08997 * 117.50159 * 0.02792 * 23 15 14 38 38 H 1.08998 * 117.50538 * 359.97235 * 24 15 14 39 39 H 1.09009 * 117.49828 * 144.99820 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5614 -5.1050 0.0000 13 6 2.7332 -6.0287 -0.0006 14 7 1.9987 -7.3010 -0.0005 15 6 2.9181 -8.4396 0.1273 16 6 3.8586 -8.6487 -1.0315 17 6 5.1273 -8.1011 -0.9997 18 6 5.9900 -8.2923 -2.0627 19 6 5.5848 -9.0308 -3.1591 20 6 4.3170 -9.5791 -3.1932 21 6 3.4520 -9.3889 -2.1286 22 9 2.2123 -9.9248 -2.1606 23 6 3.4360 -8.7758 1.5270 24 6 2.4043 -9.6843 0.8536 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1567 -3.4354 0.0002 29 1 3.3599 -5.9713 0.8894 30 1 3.3598 -5.9707 -0.8906 31 1 1.4273 -7.3886 -0.8274 32 1 5.4448 -7.5239 -0.1439 33 1 6.9827 -7.8678 -2.0349 34 1 6.2596 -9.1791 -3.9892 35 1 4.0006 -10.1555 -4.0499 36 1 4.4570 -9.1483 1.6099 37 1 3.0943 -8.1525 2.3533 38 1 1.3844 -9.6583 1.2372 39 1 2.7467 -10.6545 0.4933 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775452333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:10 Heat of formation + Delta-G solvation = -53.877351 kcal Electronic energy + Delta-G solvation = -22570.089162 eV Core-core repulsion = 19005.710688 eV Total energy + Delta-G solvation = -3564.378474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.88252 -40.89450 -40.18312 -38.29683 -36.15201 -34.42407 -34.15537 -31.81504 -31.26570 -29.80101 -27.28782 -24.68125 -24.13353 -23.98392 -22.84508 -21.39957 -20.84713 -19.02063 -18.59879 -17.83980 -17.31603 -17.24797 -17.08375 -16.69567 -16.50679 -16.15663 -15.96965 -15.34949 -15.21597 -14.97780 -14.47568 -14.21409 -14.14962 -13.95752 -13.77890 -13.37578 -13.07291 -12.90156 -12.75912 -12.72600 -12.35574 -12.21752 -12.16623 -11.64496 -11.45883 -11.02150 -10.81833 -10.71607 -9.99170 -9.85350 -9.74874 -9.50460 -8.29149 -6.46082 0.15650 0.24351 1.43586 1.44971 1.58458 1.75949 2.23287 2.43149 2.63300 2.72568 3.05888 3.10994 3.34732 3.42343 3.85091 3.93961 4.00439 4.13562 4.19648 4.35013 4.35706 4.40667 4.48359 4.54229 4.74922 4.90761 5.02622 5.10167 5.11758 5.18908 5.23329 5.28180 5.37645 5.46471 5.48448 5.67394 5.83931 5.88666 5.94545 6.14635 6.65334 6.92068 7.23542 7.50254 8.83437 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.003223 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.458838 B = 8686.151238 C = 9228.987306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.707 5.707 11 C 0.493 3.507 12 O -0.592 6.592 13 C 0.062 3.938 14 N -0.640 5.640 15 C 0.057 3.943 16 C -0.125 4.125 17 C -0.083 4.083 18 C -0.127 4.127 19 C -0.088 4.088 20 C -0.165 4.165 21 C 0.082 3.918 22 F -0.150 7.150 23 C -0.134 4.134 24 C -0.149 4.149 25 H 0.268 0.732 26 H -0.015 1.015 27 H -0.014 1.014 28 H 0.409 0.591 29 H 0.125 0.875 30 H 0.077 0.923 31 H 0.342 0.658 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.089 -20.372 -3.303 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.357 5.357 11 C 0.280 3.720 12 O -0.473 6.473 13 C -0.069 4.069 14 N -0.269 5.269 15 C -0.035 4.035 16 C -0.129 4.129 17 C -0.101 4.101 18 C -0.145 4.145 19 C -0.106 4.106 20 C -0.183 4.183 21 C 0.063 3.937 22 F -0.129 7.129 23 C -0.171 4.171 24 C -0.187 4.187 25 H 0.077 0.923 26 H 0.003 0.997 27 H 0.004 0.996 28 H 0.245 0.755 29 H 0.143 0.857 30 H 0.095 0.905 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.163 0.837 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.870 -20.382 -2.611 26.587 hybrid contribution -0.206 0.866 -1.005 1.343 sum 16.664 -19.516 -3.617 25.916 Atomic orbital electron populations 1.70153 1.08374 1.28512 1.50078 1.26099 0.95769 1.04022 0.93847 0.85088 0.79163 0.77179 0.77636 1.17400 1.20517 1.20496 1.21654 0.94373 0.90449 1.52736 0.89599 1.18532 0.88731 0.84441 0.93934 1.46145 1.11194 1.05370 1.73026 1.21389 0.89871 0.84957 0.75825 1.90647 1.19403 1.85428 1.51842 1.21674 0.93971 0.86687 1.04604 1.60087 1.21028 0.99393 1.46405 1.19947 0.96803 0.94306 0.92417 1.19838 0.96778 1.01066 0.95178 1.21237 0.91317 0.97639 0.99924 1.21620 1.01159 0.98646 0.93050 1.21436 0.94760 0.95186 0.99221 1.21436 0.95082 1.03561 0.98262 1.17978 0.80804 0.98201 0.96747 1.91473 1.40299 1.84358 1.96765 1.23197 0.99767 1.01481 0.92696 1.23083 1.00085 0.93353 1.02169 0.92272 0.99709 0.99624 0.75529 0.85706 0.90488 0.83895 0.83351 0.82380 0.82215 0.83670 0.86212 0.88108 0.88793 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.11 5.46 84.65 0.46 0.58 16 3 Si 0.99 42.24 29.54 68.60 2.03 44.26 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -30.24 9.28 25.60 0.24 -30.00 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.27 14.87 5.43 85.63 0.46 15.34 16 10 N -0.71 -30.11 5.55 -466.78 -2.59 -32.70 16 11 C 0.49 20.26 7.88 87.66 0.69 20.95 16 12 O -0.59 -30.67 16.32 -3.04 -0.05 -30.72 16 13 C 0.06 1.75 5.80 85.56 0.50 2.24 16 14 N -0.64 -18.70 6.13 -477.88 -2.93 -21.63 16 15 C 0.06 1.26 1.48 2.78 0.00 1.26 16 16 C -0.13 -2.50 4.66 -19.82 -0.09 -2.60 16 17 C -0.08 -1.23 8.89 22.26 0.20 -1.03 16 18 C -0.13 -1.48 10.04 22.27 0.22 -1.26 16 19 C -0.09 -1.06 10.04 22.26 0.22 -0.84 16 20 C -0.16 -2.73 10.03 22.31 0.22 -2.50 16 21 C 0.08 1.78 7.17 22.38 0.16 1.94 16 22 F -0.15 -3.85 16.42 44.97 0.74 -3.12 16 23 C -0.13 -2.38 9.86 30.62 0.30 -2.08 16 24 C -0.15 -3.10 9.66 30.62 0.30 -2.81 16 25 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 26 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 27 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H 0.41 14.06 8.32 -92.71 -0.77 13.29 16 29 H 0.13 2.83 8.07 -2.39 -0.02 2.81 16 30 H 0.08 1.86 7.37 -2.39 -0.02 1.84 16 31 H 0.34 11.27 8.71 -89.69 -0.78 10.49 16 32 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.12 1.55 8.14 -2.39 -0.02 1.54 16 37 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -75.25 343.71 0.90 -74.35 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.47 Total: 26.90 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 3.89 Total: -0.81 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -5.24 Total: -110.86 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.74 Total: -3.12 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -75.25 0.90 -74.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775452333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.475 kcal (2) G-P(sol) polarization free energy of solvation -75.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds