Wall clock time and date at job start Tue Mar 31 2020 06:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00378 * 2 1 4 4 C 1.39924 * 120.00056 * 180.02562 * 2 1 3 5 5 C 1.38871 * 120.00616 * 174.21427 * 4 2 1 6 6 C 1.38079 * 119.99471 * 179.74047 * 5 4 2 7 7 C 1.38834 * 120.00132 * 0.50613 * 6 5 4 8 8 N 1.40198 * 119.99533 * 179.74348 * 7 6 5 9 9 C 1.34773 * 120.00328 * 215.16143 * 8 7 6 10 10 O 1.21592 * 120.00168 * 355.51879 * 9 8 7 11 11 N 1.34779 * 120.00021 * 175.52203 * 9 8 7 12 12 N 1.40099 * 120.00256 * 0.02562 * 11 9 8 13 13 C 1.34769 * 120.00186 * 180.02562 * 12 11 9 14 14 O 1.21688 * 120.00314 * 0.02562 * 13 12 11 15 15 C 1.46375 * 120.00104 * 179.97438 * 13 12 11 16 16 H 1.07999 * 119.99815 * 0.02562 * 15 13 12 17 17 C 1.40046 * 120.00035 * 180.02562 * 15 13 12 18 18 N 1.30668 * 120.00221 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99822 * 180.02562 * 17 15 13 20 20 H 1.48491 * 109.47319 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47123 * 119.99962 * 19 17 15 22 22 H 1.48503 * 109.46672 * 239.99687 * 19 17 15 23 23 C 1.38837 * 120.01168 * 359.77075 * 7 6 5 24 24 C 1.38075 * 120.00350 * 359.97333 * 23 7 6 25 25 H 1.08998 * 109.47399 * 270.00167 * 1 2 3 26 26 H 1.09003 * 109.46942 * 30.00033 * 1 2 3 27 27 H 1.09003 * 109.47275 * 149.99881 * 1 2 3 28 28 H 1.08999 * 109.47633 * 185.03068 * 3 2 1 29 29 H 1.09000 * 109.47279 * 305.02781 * 3 2 1 30 30 H 1.08998 * 109.47289 * 65.02675 * 3 2 1 31 31 H 1.08002 * 120.00657 * 359.97438 * 5 4 2 32 32 H 1.07998 * 120.00023 * 180.23057 * 6 5 4 33 33 H 0.97005 * 119.99896 * 35.16182 * 8 7 6 34 34 H 0.97000 * 119.99769 * 180.02562 * 11 9 8 35 35 H 0.97004 * 119.99425 * 0.02562 * 12 11 9 36 36 H 0.97004 * 120.00118 * 180.02562 * 18 17 15 37 37 H 1.08001 * 119.99439 * 179.97438 * 23 7 6 38 38 H 1.08008 * 119.99834 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1646 -1.2118 -0.0005 5 6 3.5480 -1.2149 -0.1218 6 6 4.2386 -2.4106 -0.1169 7 6 3.5491 -3.6100 -0.0014 8 7 4.2501 -4.8242 -0.0018 9 6 3.7083 -5.9149 -0.5792 10 8 2.5790 -5.8680 -1.0274 11 7 4.4183 -7.0577 -0.6597 12 7 5.7193 -7.1120 -0.1427 13 6 6.4295 -8.2546 -0.2237 14 8 5.9409 -9.2389 -0.7463 15 6 7.7889 -8.3111 0.3159 16 1 8.2227 -7.4374 0.7793 17 6 8.5271 -9.4983 0.2313 18 7 8.0020 -10.5556 -0.3289 19 14 10.2618 -9.5706 0.9206 20 1 10.6202 -8.2506 1.4987 21 1 10.3310 -10.6102 1.9788 22 1 11.2133 -9.9086 -0.1682 23 6 2.1656 -3.6074 0.1141 24 6 1.4750 -2.4117 0.1145 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 3.2657 1.0715 -0.0901 29 1 1.8684 1.8783 -0.8415 30 1 2.0035 1.8003 0.9316 31 1 4.0840 -0.2821 -0.2161 32 1 5.3148 -2.4129 -0.2074 33 1 5.1250 -4.8793 0.4134 34 1 4.0285 -7.8425 -1.0756 35 1 6.1089 -6.3272 0.2735 36 1 8.5132 -11.3780 -0.3872 37 1 1.6295 -4.5407 0.2035 38 1 0.3987 -2.4098 0.2039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802124155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:08 Heat of formation + Delta-G solvation = 19.195947 kcal Electronic energy + Delta-G solvation = -22213.224242 eV Core-core repulsion = 18671.934426 eV Total energy + Delta-G solvation = -3541.289816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43275 -39.15004 -37.48839 -36.36683 -34.58931 -33.65673 -32.61133 -31.17545 -30.00229 -28.71192 -28.32534 -26.18757 -24.68821 -22.61181 -21.64542 -20.87822 -20.06751 -18.90227 -17.67129 -17.17797 -16.65739 -15.89977 -15.74736 -15.26415 -15.09764 -15.04371 -14.47071 -14.35198 -13.92189 -13.74164 -13.51628 -12.92019 -12.80118 -12.67323 -12.57323 -12.44500 -12.15851 -12.13484 -11.44211 -11.22330 -11.03601 -10.74543 -10.52687 -10.38916 -10.17457 -9.87723 -9.05893 -9.02010 -8.83941 -8.00573 -7.31169 -6.97544 -6.42867 -4.89695 1.48709 1.60711 2.80875 3.00578 3.02826 3.12218 3.16102 3.39579 3.46564 3.99121 4.02795 4.36674 4.70551 4.78654 4.99392 5.07254 5.14474 5.33638 5.41351 5.42704 5.50963 5.51003 5.54542 5.59564 5.81202 6.06573 6.14535 6.25549 6.53241 6.65677 6.97305 7.02727 7.14818 7.22296 7.31293 7.44537 7.72349 8.03653 8.43642 8.77180 8.92459 9.09174 10.31640 10.49941 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.033107 B = 0.002762 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.548186 B =10133.667029 C =10874.939441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.643 5.643 3 C 0.092 3.908 4 C 0.191 3.809 5 C -0.181 4.181 6 C -0.100 4.100 7 C 0.117 3.883 8 N -0.686 5.686 9 C 0.704 3.296 10 O -0.589 6.589 11 N -0.519 5.519 12 N -0.571 5.571 13 C 0.555 3.445 14 O -0.572 6.572 15 C -0.533 4.533 16 H 0.075 0.925 17 C 0.087 3.913 18 N -0.761 5.761 19 Si 0.917 3.083 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.275 1.275 23 C -0.071 4.071 24 C -0.177 4.177 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.403 0.597 34 H 0.439 0.561 35 H 0.398 0.602 36 H 0.272 0.728 37 H 0.142 0.858 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 21.218 3.146 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.358 5.358 3 C -0.051 4.051 4 C 0.091 3.909 5 C -0.203 4.203 6 C -0.122 4.122 7 C 0.021 3.979 8 N -0.336 5.336 9 C 0.404 3.596 10 O -0.466 6.466 11 N -0.269 5.269 12 N -0.328 5.328 13 C 0.360 3.640 14 O -0.452 6.452 15 C -0.571 4.571 16 H 0.094 0.906 17 C -0.135 4.135 18 N -0.389 5.389 19 Si 0.741 3.259 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.092 4.092 24 C -0.200 4.200 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.239 0.761 34 H 0.285 0.715 35 H 0.237 0.763 36 H 0.083 0.917 37 H 0.159 0.841 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.817 20.514 2.401 22.457 hybrid contribution 1.351 0.028 0.532 1.452 sum -7.467 20.542 2.933 22.053 Atomic orbital electron populations 1.21552 0.79783 1.02430 1.00902 1.46236 1.04727 1.02985 1.81817 1.21636 0.97770 0.85086 1.00591 1.17816 0.91200 0.85597 0.96272 1.20415 0.92110 0.97820 1.09961 1.20645 0.99693 0.90725 1.01113 1.17330 0.91474 0.84064 1.05010 1.42505 1.22452 1.08104 1.60500 1.15671 0.84197 0.79944 0.79823 1.90928 1.17255 1.82602 1.55810 1.44293 1.07673 1.13164 1.61753 1.45936 1.03717 1.16889 1.66252 1.18631 0.85740 0.79544 0.80065 1.90645 1.71321 1.34373 1.48895 1.20687 0.96447 0.98848 1.41166 0.90637 1.25725 0.99619 0.94729 0.93394 1.70010 1.36396 1.01198 1.31256 0.86153 0.81451 0.79206 0.79049 1.18562 1.19983 1.19991 1.21145 0.92880 0.98528 0.96644 1.20570 0.99585 0.90573 1.09254 0.93697 0.91913 0.91342 0.90420 0.92995 0.93353 0.85740 0.85722 0.76097 0.71548 0.76332 0.91667 0.84065 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 10.11 59.84 0.60 1.32 16 2 N -0.64 -6.10 3.42 -187.50 -0.64 -6.74 16 3 C 0.09 0.64 10.63 59.85 0.64 1.27 16 4 C 0.19 2.25 6.54 -83.69 -0.55 1.70 16 5 C -0.18 -2.03 9.31 -39.41 -0.37 -2.40 16 6 C -0.10 -1.23 9.96 -39.42 -0.39 -1.62 16 7 C 0.12 1.72 6.30 -83.59 -0.53 1.19 16 8 N -0.69 -10.51 5.30 -14.17 -0.08 -10.58 16 9 C 0.70 13.24 8.52 -86.92 -0.74 12.50 16 10 O -0.59 -12.34 14.62 5.28 0.08 -12.26 16 11 N -0.52 -10.50 6.26 27.63 0.17 -10.33 16 12 N -0.57 -11.91 6.25 30.19 0.19 -11.72 16 13 C 0.55 14.66 7.86 -12.99 -0.10 14.56 16 14 O -0.57 -17.45 14.86 5.20 0.08 -17.38 16 15 C -0.53 -13.75 9.54 -35.63 -0.34 -14.09 16 16 H 0.08 1.72 7.85 -52.49 -0.41 1.31 16 17 C 0.09 2.25 5.50 -17.37 -0.10 2.15 16 18 N -0.76 -21.50 11.83 55.55 0.66 -20.84 16 19 Si 0.92 18.71 29.56 -169.99 -5.02 13.68 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.07 -1.07 8.69 -39.42 -0.34 -1.41 16 24 C -0.18 -2.26 9.16 -39.41 -0.36 -2.62 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.36 8.07 -51.93 -0.42 -0.06 16 27 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 28 H 0.08 0.50 5.31 -51.93 -0.28 0.22 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.12 1.10 5.74 -52.49 -0.30 0.80 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.40 5.29 6.76 -40.82 -0.28 5.01 16 34 H 0.44 9.48 8.10 -182.60 -1.48 8.00 16 35 H 0.40 6.83 6.69 -182.59 -1.22 5.61 16 36 H 0.27 6.95 8.29 -40.82 -0.34 6.62 16 37 H 0.14 2.35 6.22 -52.49 -0.33 2.03 16 38 H 0.12 1.34 6.30 -52.48 -0.33 1.01 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -34.01 323.79 -8.46 -42.48 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -6.20 Total: 16.25 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -2.57 Total: 12.55 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.30 Total: -60.21 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: 0.15 Total: -29.64 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.01 -8.46 -42.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802124155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.671 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds