Wall clock time and date at job start Tue Mar 31 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00378 * 2 1 4 4 C 1.39924 * 120.00056 * 180.02562 * 2 1 3 5 5 C 1.38871 * 120.00616 * 174.21427 * 4 2 1 6 6 C 1.38079 * 119.99471 * 179.74047 * 5 4 2 7 7 C 1.38834 * 120.00132 * 0.50613 * 6 5 4 8 8 N 1.40198 * 119.99533 * 179.74348 * 7 6 5 9 9 C 1.34773 * 120.00328 * 215.16143 * 8 7 6 10 10 O 1.21592 * 120.00168 * 355.51879 * 9 8 7 11 11 N 1.34779 * 120.00021 * 175.52203 * 9 8 7 12 12 N 1.40099 * 120.00256 * 0.02562 * 11 9 8 13 13 C 1.34769 * 120.00186 * 180.02562 * 12 11 9 14 14 O 1.21688 * 120.00314 * 0.02562 * 13 12 11 15 15 C 1.46375 * 120.00104 * 179.97438 * 13 12 11 16 16 H 1.07999 * 119.99815 * 0.02562 * 15 13 12 17 17 C 1.40046 * 120.00035 * 180.02562 * 15 13 12 18 18 N 1.30668 * 120.00221 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99822 * 180.02562 * 17 15 13 20 20 H 1.48491 * 109.47319 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47123 * 119.99962 * 19 17 15 22 22 H 1.48503 * 109.46672 * 239.99687 * 19 17 15 23 23 C 1.38837 * 120.01168 * 359.77075 * 7 6 5 24 24 C 1.38075 * 120.00350 * 359.97333 * 23 7 6 25 25 H 1.08998 * 109.47399 * 270.00167 * 1 2 3 26 26 H 1.09003 * 109.46942 * 30.00033 * 1 2 3 27 27 H 1.09003 * 109.47275 * 149.99881 * 1 2 3 28 28 H 1.08999 * 109.47633 * 185.03068 * 3 2 1 29 29 H 1.09000 * 109.47279 * 305.02781 * 3 2 1 30 30 H 1.08998 * 109.47289 * 65.02675 * 3 2 1 31 31 H 1.08002 * 120.00657 * 359.97438 * 5 4 2 32 32 H 1.07998 * 120.00023 * 180.23057 * 6 5 4 33 33 H 0.97005 * 119.99896 * 35.16182 * 8 7 6 34 34 H 0.97000 * 119.99769 * 180.02562 * 11 9 8 35 35 H 0.97004 * 119.99425 * 0.02562 * 12 11 9 36 36 H 0.97004 * 120.00118 * 180.02562 * 18 17 15 37 37 H 1.08001 * 119.99439 * 179.97438 * 23 7 6 38 38 H 1.08008 * 119.99834 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1646 -1.2118 -0.0005 5 6 3.5480 -1.2149 -0.1218 6 6 4.2386 -2.4106 -0.1169 7 6 3.5491 -3.6100 -0.0014 8 7 4.2501 -4.8242 -0.0018 9 6 3.7083 -5.9149 -0.5792 10 8 2.5790 -5.8680 -1.0274 11 7 4.4183 -7.0577 -0.6597 12 7 5.7193 -7.1120 -0.1427 13 6 6.4295 -8.2546 -0.2237 14 8 5.9409 -9.2389 -0.7463 15 6 7.7889 -8.3111 0.3159 16 1 8.2227 -7.4374 0.7793 17 6 8.5271 -9.4983 0.2313 18 7 8.0020 -10.5556 -0.3289 19 14 10.2618 -9.5706 0.9206 20 1 10.6202 -8.2506 1.4987 21 1 10.3310 -10.6102 1.9788 22 1 11.2133 -9.9086 -0.1682 23 6 2.1656 -3.6074 0.1141 24 6 1.4750 -2.4117 0.1145 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 3.2657 1.0715 -0.0901 29 1 1.8684 1.8783 -0.8415 30 1 2.0035 1.8003 0.9316 31 1 4.0840 -0.2821 -0.2161 32 1 5.3148 -2.4129 -0.2074 33 1 5.1250 -4.8793 0.4134 34 1 4.0285 -7.8425 -1.0756 35 1 6.1089 -6.3272 0.2735 36 1 8.5132 -11.3780 -0.3872 37 1 1.6295 -4.5407 0.2035 38 1 0.3987 -2.4098 0.2039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802124155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:07 Heat of formation + Delta-G solvation = -5.978648 kcal Electronic energy + Delta-G solvation = -22214.315895 eV Core-core repulsion = 18671.934426 eV Total energy + Delta-G solvation = -3542.381469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.76782 -40.28100 -39.30282 -37.38229 -36.36717 -34.90139 -34.56360 -32.11230 -31.75210 -29.74734 -28.95816 -28.11646 -25.56338 -23.63951 -22.85608 -22.66036 -21.27532 -20.41939 -18.93226 -18.74444 -18.04328 -17.39321 -16.94347 -16.69142 -16.39719 -15.88366 -15.79906 -15.69066 -15.38961 -14.88105 -14.62610 -14.57518 -14.33850 -13.61610 -13.44548 -13.30755 -13.23930 -12.84973 -12.84072 -12.81327 -12.71190 -12.05883 -11.96338 -11.94459 -11.67355 -11.23527 -10.95996 -10.10220 -10.06483 -9.83754 -9.02226 -8.36664 -7.93453 -6.92174 0.51426 0.56218 1.21633 1.44586 1.48621 1.65295 1.92125 2.06713 2.30943 2.34024 2.42801 2.97277 3.54828 3.91789 4.02206 4.15569 4.26359 4.46534 4.52699 4.56963 4.60433 4.65580 4.82812 4.92240 4.95338 5.07798 5.19792 5.25491 5.30240 5.31014 5.47082 5.60291 5.86338 5.94310 5.99457 6.19894 6.41528 6.58631 6.79951 6.88474 7.27789 7.37260 8.36056 8.58975 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.033107 B = 0.002762 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.548186 B =10133.667029 C =10874.939441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.646 5.646 3 C 0.085 3.915 4 C 0.194 3.806 5 C -0.180 4.180 6 C -0.091 4.091 7 C 0.083 3.917 8 N -0.669 5.669 9 C 0.706 3.294 10 O -0.612 6.612 11 N -0.527 5.527 12 N -0.552 5.552 13 C 0.540 3.460 14 O -0.624 6.624 15 C -0.552 4.552 16 H 0.105 0.895 17 C 0.029 3.971 18 N -0.817 5.817 19 Si 1.005 2.995 20 H -0.239 1.239 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.090 4.090 24 C -0.188 4.188 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.413 0.587 34 H 0.430 0.570 35 H 0.418 0.582 36 H 0.277 0.723 37 H 0.114 0.886 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 24.588 4.126 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.359 5.359 3 C -0.057 4.057 4 C 0.092 3.908 5 C -0.203 4.203 6 C -0.112 4.112 7 C -0.012 4.012 8 N -0.320 5.320 9 C 0.406 3.594 10 O -0.491 6.491 11 N -0.276 5.276 12 N -0.309 5.309 13 C 0.346 3.654 14 O -0.508 6.508 15 C -0.590 4.590 16 H 0.123 0.877 17 C -0.187 4.187 18 N -0.446 5.446 19 Si 0.824 3.176 20 H -0.162 1.162 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.111 4.111 24 C -0.211 4.211 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.251 0.749 34 H 0.273 0.727 35 H 0.260 0.740 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.216 24.030 3.419 25.322 hybrid contribution 0.684 -0.812 0.222 1.084 sum -6.532 23.218 3.641 24.393 Atomic orbital electron populations 1.21706 0.78801 1.03206 1.01567 1.46545 1.05662 1.03018 1.80636 1.21847 0.97924 0.84027 1.01871 1.17991 0.91765 0.86153 0.94896 1.20771 0.92039 0.98631 1.08824 1.20896 1.00861 0.89895 0.99553 1.17557 0.91543 0.84328 1.07778 1.42312 1.22683 1.07481 1.59514 1.15748 0.83788 0.80168 0.79724 1.90912 1.18310 1.82943 1.56888 1.44341 1.07368 1.13526 1.62382 1.45344 1.03780 1.16409 1.65397 1.19014 0.86609 0.79957 0.79819 1.90607 1.72530 1.36611 1.51066 1.21278 0.96392 1.00216 1.41087 0.87697 1.27024 1.04750 0.93898 0.93049 1.70178 1.38952 1.02323 1.33184 0.84844 0.74523 0.80129 0.78066 1.16186 1.19712 1.19687 1.21034 0.93396 0.98368 0.98287 1.20649 1.00200 0.90473 1.09755 0.93062 0.89804 0.91961 0.89824 0.91557 0.92152 0.82812 0.83374 0.74871 0.72678 0.74012 0.91255 0.86755 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 10.11 127.77 1.29 2.42 16 2 N -0.65 -10.46 3.42 -747.12 -2.55 -13.02 16 3 C 0.09 0.87 10.63 127.77 1.36 2.23 16 4 C 0.19 4.18 6.54 38.15 0.25 4.43 16 5 C -0.18 -3.54 9.31 22.38 0.21 -3.33 16 6 C -0.09 -2.03 9.96 22.37 0.22 -1.80 16 7 C 0.08 2.40 6.30 38.09 0.24 2.64 16 8 N -0.67 -20.37 5.30 -317.02 -1.68 -22.05 16 9 C 0.71 27.20 8.52 179.05 1.53 28.72 16 10 O -0.61 -26.67 14.62 -4.00 -0.06 -26.73 16 11 N -0.53 -21.96 6.26 -184.74 -1.16 -23.12 16 12 N -0.55 -23.20 6.25 -176.63 -1.10 -24.30 16 13 C 0.54 29.07 7.86 86.36 0.68 29.75 16 14 O -0.62 -39.55 14.86 -4.31 -0.06 -39.62 16 15 C -0.55 -28.21 9.54 24.83 0.24 -27.97 16 16 H 0.11 4.56 7.85 -2.91 -0.02 4.53 16 17 C 0.03 1.49 5.50 85.30 0.47 1.96 16 18 N -0.82 -47.29 11.83 21.83 0.26 -47.03 16 19 Si 1.01 37.51 29.56 68.60 2.03 39.54 16 20 H -0.24 -7.98 7.11 99.48 0.71 -7.27 16 21 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 23 C -0.09 -2.76 8.69 22.37 0.19 -2.56 16 24 C -0.19 -4.74 9.16 22.38 0.20 -4.53 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.08 0.71 8.07 -2.39 -0.02 0.69 16 27 H 0.06 0.86 6.44 -2.39 -0.02 0.85 16 28 H 0.08 0.74 5.31 -2.39 -0.01 0.73 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.15 2.08 5.74 -2.91 -0.02 2.06 16 32 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 33 H 0.41 10.40 6.76 -92.70 -0.63 9.78 16 34 H 0.43 19.55 8.10 -213.32 -1.73 17.82 16 35 H 0.42 13.96 6.69 -213.32 -1.43 12.53 16 36 H 0.28 14.52 8.29 -92.71 -0.77 13.75 16 37 H 0.11 4.07 6.22 -2.91 -0.02 4.05 16 38 H 0.13 2.90 6.30 -2.91 -0.02 2.88 16 Total: -1.00 -76.31 323.79 -0.09 -76.40 By element: Atomic # 1 Polarization: 50.61 SS G_CDS: -2.63 Total: 47.98 kcal Atomic # 6 Polarization: 25.07 SS G_CDS: 6.88 Total: 31.95 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -6.24 Total: -129.51 kcal Atomic # 8 Polarization: -66.23 SS G_CDS: -0.12 Total: -66.35 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -76.31 -0.09 -76.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802124155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.418 kcal (2) G-P(sol) polarization free energy of solvation -76.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds