Wall clock time and date at job start Tue Mar 31 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46617 * 2 1 4 4 C 1.50697 * 109.47093 * 119.99903 * 2 1 3 5 5 N 1.29771 * 125.12008 * 299.97825 * 4 2 1 6 6 C 1.36323 * 108.66104 * 179.74982 * 5 4 2 7 7 C 1.43200 * 126.63244 * 180.30160 * 6 5 4 8 8 N 6.03622 * 97.71596 * 101.36906 * 2 1 3 9 9 C 1.38449 * 106.73771 * 0.42858 * 6 5 4 10 10 N 1.37925 * 126.73166 * 179.84286 * 9 6 5 11 11 N 1.40097 * 120.00021 * 179.70694 * 10 9 6 12 12 C 1.34784 * 120.00130 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99774 * 179.72966 * 12 11 10 15 15 C 1.53003 * 109.46624 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46956 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99792 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00025 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00104 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99859 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46781 * 90.00624 * 20 18 16 22 22 H 1.48505 * 109.47305 * 210.00006 * 20 18 16 23 23 H 1.48494 * 109.47296 * 330.00194 * 20 18 16 24 24 O 1.34299 * 125.11834 * 120.00082 * 4 2 1 25 25 H 1.09001 * 109.47022 * 299.99425 * 1 2 3 26 26 H 1.09000 * 109.47105 * 59.99782 * 1 2 3 27 27 H 1.09005 * 109.46905 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47099 * 240.00443 * 2 1 3 29 29 H 1.09000 * 109.46895 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47561 * 299.99939 * 3 2 1 31 31 H 1.09004 * 109.47210 * 60.00072 * 3 2 1 32 32 H 0.97005 * 119.99955 * 359.71044 * 10 9 6 33 33 H 0.97005 * 120.00024 * 0.02562 * 11 10 9 34 34 H 1.09001 * 109.46809 * 299.99238 * 14 12 11 35 35 H 1.08993 * 109.47525 * 59.99679 * 14 12 11 36 36 H 1.09001 * 109.46782 * 299.99104 * 15 14 12 37 37 H 1.08993 * 109.47555 * 59.99547 * 15 14 12 38 38 H 0.97001 * 119.99843 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7812 -0.3544 2.4528 6 6 2.3943 -1.2315 3.2973 7 6 2.3643 -1.2024 4.7287 8 7 2.3405 -1.1791 5.8642 9 6 3.0540 -2.1543 2.5036 10 7 3.8103 -3.2235 2.9363 11 7 4.4142 -4.0772 2.0040 12 6 5.1529 -5.1223 2.4269 13 8 5.2943 -5.3239 3.6145 14 6 5.7975 -6.0442 1.4241 15 6 6.5716 -7.1386 2.1615 16 6 7.2157 -8.0609 1.1587 17 1 7.0855 -7.8844 0.1012 18 6 7.9712 -9.1301 1.5913 19 7 8.1294 -9.3454 2.8790 20 14 8.7690 -10.2737 0.3482 21 1 10.1252 -9.7707 0.0121 22 1 8.8763 -11.6370 0.9273 23 1 7.9399 -10.3227 -0.8828 24 8 2.8078 -1.8069 1.2270 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9240 -3.3843 3.8861 33 1 4.3008 -3.9162 1.0542 34 1 5.0270 -6.5006 0.8025 35 1 6.4820 -5.4753 0.7950 36 1 7.3420 -6.6826 2.7833 37 1 5.8868 -7.7075 2.7903 38 1 8.6612 -10.0973 3.1833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812489436.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:22 Heat of formation + Delta-G solvation = 10.107582 kcal Electronic energy + Delta-G solvation = -21890.597529 eV Core-core repulsion = 18348.913612 eV Total energy + Delta-G solvation = -3541.683917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.53555 -41.09075 -38.11004 -37.75075 -36.62674 -35.59049 -35.53485 -33.65499 -32.54121 -29.34869 -27.95392 -27.53329 -25.68498 -24.36921 -23.62406 -22.17440 -21.32522 -20.26334 -19.47729 -19.05888 -18.24124 -18.23837 -16.98217 -16.74700 -16.53288 -16.39440 -15.71604 -15.18711 -15.06906 -14.87291 -14.71030 -14.31176 -14.23989 -14.08559 -13.85912 -13.46450 -13.28548 -12.96195 -12.81279 -12.61918 -12.48665 -12.36582 -12.10973 -11.97622 -11.93641 -11.71263 -11.68271 -11.33879 -11.12084 -10.75637 -10.54795 -8.72892 -8.17580 -6.30889 -0.01524 0.13439 0.91899 1.10351 1.32455 1.44248 1.45333 1.46774 1.57570 2.27603 2.41123 2.43513 2.96816 3.16982 3.37822 3.60900 3.89420 4.03665 4.19799 4.22569 4.40866 4.43861 4.53442 4.86322 4.93082 4.98586 5.05314 5.05604 5.16863 5.23727 5.46389 5.50474 5.51580 5.62292 5.76131 5.86006 6.16309 6.21131 6.28509 6.45280 6.87832 7.07548 7.39866 8.94904 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.002742 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.709581 B =10210.491074 C =11269.807527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.009 3.991 3 C -0.144 4.144 4 C 0.205 3.795 5 N -0.431 5.431 6 C -0.064 4.064 7 C 0.315 3.685 8 N -0.445 5.445 9 C 0.343 3.657 10 N -0.479 5.479 11 N -0.514 5.514 12 C 0.520 3.480 13 O -0.575 6.575 14 C -0.104 4.104 15 C 0.038 3.962 16 C -0.539 4.539 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.939 5.939 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.253 1.253 24 O -0.205 6.205 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.127 0.873 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.457 0.543 33 H 0.446 0.554 34 H 0.121 0.879 35 H 0.121 0.879 36 H -0.014 1.014 37 H -0.014 1.014 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.554 20.618 -14.007 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.010 4.010 3 C -0.202 4.202 4 C -0.008 4.008 5 N -0.157 5.157 6 C -0.191 4.191 7 C 0.001 3.999 8 N -0.124 5.124 9 C 0.176 3.824 10 N -0.212 5.212 11 N -0.266 5.266 12 C 0.309 3.691 13 O -0.451 6.451 14 C -0.145 4.145 15 C 0.000 4.000 16 C -0.577 4.577 17 H 0.100 0.900 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.199 1.199 22 H -0.217 1.217 23 H -0.176 1.176 24 O -0.091 6.091 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.145 0.855 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.305 0.695 33 H 0.291 0.709 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.004 0.996 37 H 0.005 0.995 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.715 20.825 -11.316 27.897 hybrid contribution 1.065 -1.471 -0.106 1.820 sum -13.650 19.353 -11.422 26.293 Atomic orbital electron populations 1.21892 0.91422 1.02946 1.03913 1.20024 0.97093 0.95296 0.88596 1.21890 1.01488 0.92878 1.03916 1.26671 0.93384 0.84531 0.96184 1.70537 1.20878 1.24560 0.99772 1.15693 1.15318 1.01487 0.86574 1.23770 0.92636 0.93159 0.90317 1.81323 1.10569 1.08654 1.11903 1.19095 0.91928 0.88180 0.83225 1.42403 1.50644 1.22109 1.06045 1.45252 1.51109 1.24548 1.05705 1.21961 0.76723 0.79414 0.90959 1.90737 1.61722 1.72858 1.19792 1.21663 1.00969 0.95229 0.96610 1.18754 0.93856 0.92508 0.94843 1.21708 1.30869 1.10953 0.94180 0.90008 1.26104 0.97333 0.99930 0.97099 1.70170 1.41020 1.30693 1.15997 0.85360 0.78938 0.77192 0.79000 1.19889 1.21687 1.17615 1.84349 1.57986 1.42397 1.24398 0.92565 0.88488 0.92346 0.85519 0.92346 0.88489 0.92564 0.69470 0.70903 0.86129 0.86118 0.99561 0.99545 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.17 71.98 0.66 -0.29 16 2 C 0.01 0.07 3.39 -11.54 -0.04 0.03 16 3 C -0.14 -0.95 9.17 71.98 0.66 -0.29 16 4 C 0.21 3.16 6.78 88.41 0.60 3.76 16 5 N -0.43 -8.98 11.34 -294.68 -3.34 -12.32 16 6 C -0.06 -1.49 6.99 39.74 0.28 -1.21 16 7 C 0.32 8.56 15.66 88.33 1.38 9.94 16 8 N -0.45 -13.82 18.54 19.00 0.35 -13.47 16 9 C 0.34 7.03 8.18 83.78 0.69 7.72 16 10 N -0.48 -11.01 6.40 -165.73 -1.06 -12.07 16 11 N -0.51 -11.53 6.31 -173.52 -1.10 -12.62 16 12 C 0.52 16.89 7.95 87.65 0.70 17.59 16 13 O -0.57 -24.85 15.82 -3.04 -0.05 -24.90 16 14 C -0.10 -3.44 5.64 29.85 0.17 -3.27 16 15 C 0.04 1.94 4.26 29.85 0.13 2.06 16 16 C -0.54 -28.43 9.11 25.60 0.23 -28.20 16 17 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 18 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 19 N -0.94 -57.57 13.29 21.45 0.28 -57.29 16 20 Si 0.97 42.31 29.54 68.60 2.03 44.34 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 24 O -0.21 -3.34 10.40 -5.02 -0.05 -3.39 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.46 11.74 7.86 -213.32 -1.68 10.07 16 33 H 0.45 6.55 8.43 -213.32 -1.80 4.75 16 34 H 0.12 3.29 8.14 -2.39 -0.02 3.28 16 35 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 36 H -0.01 -0.82 8.10 -2.39 -0.02 -0.84 16 37 H -0.01 -0.81 8.10 -2.39 -0.02 -0.83 16 38 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -76.22 346.54 0.62 -75.60 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -2.36 Total: 8.21 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 5.92 Total: 7.90 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -4.86 Total: -107.77 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.10 Total: -28.29 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -76.22 0.62 -75.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812489436.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.708 kcal (2) G-P(sol) polarization free energy of solvation -76.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds