Wall clock time and date at job start Tue Mar 31 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 115.55147 * 2 1 4 4 O 1.45198 * 109.47013 * 325.58529 * 3 2 1 5 5 C 1.34224 * 117.00036 * 179.97438 * 4 3 2 6 6 O 1.20826 * 119.99758 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00103 * 180.02562 * 5 4 3 8 8 C 1.50699 * 109.47113 * 180.02562 * 7 5 4 9 9 C 1.37642 * 120.12856 * 265.27785 * 8 7 5 10 10 C 1.38608 * 120.25140 * 180.30228 * 9 8 7 11 11 C 1.38662 * 120.50063 * 359.71885 * 10 9 8 12 12 C 1.37598 * 120.24524 * 359.97307 * 11 10 9 13 13 C 1.40698 * 120.13096 * 85.00128 * 8 7 5 14 14 C 1.41394 * 120.24023 * 359.96887 * 13 8 7 15 15 H 1.07998 * 120.00756 * 334.51228 * 14 13 8 16 16 C 1.39953 * 119.99608 * 154.23112 * 14 13 8 17 17 N 1.30821 * 119.99838 * 345.01540 * 16 14 13 18 18 Si 1.86799 * 119.99814 * 165.01542 * 16 14 13 19 19 H 1.48502 * 109.47415 * 89.99951 * 18 16 14 20 20 H 1.48506 * 109.47139 * 210.00164 * 18 16 14 21 21 H 1.48503 * 109.47207 * 329.99880 * 18 16 14 22 22 C 1.52997 * 117.50129 * 145.67470 * 2 1 3 23 23 C 1.53002 * 117.49961 * 214.33145 * 2 1 3 24 24 H 1.09004 * 117.50293 * 144.99624 * 23 2 1 25 25 F 1.39905 * 117.49627 * 359.97438 * 23 2 1 26 26 H 1.09000 * 109.47218 * 34.41275 * 1 2 3 27 27 H 1.09004 * 109.47185 * 154.41263 * 1 2 3 28 28 H 1.08997 * 109.46973 * 274.41406 * 1 2 3 29 29 H 1.09000 * 109.46802 * 205.58478 * 3 2 1 30 30 H 1.08992 * 109.46923 * 85.58404 * 3 2 1 31 31 H 1.09004 * 109.47261 * 59.99913 * 7 5 4 32 32 H 1.09009 * 109.47035 * 299.99967 * 7 5 4 33 33 H 1.08000 * 119.87657 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.75449 * 179.69119 * 10 9 8 35 35 H 1.07996 * 119.87511 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.12633 * 180.02562 * 12 11 10 37 37 H 0.97003 * 119.99567 * 179.97438 * 17 16 14 38 38 H 1.09006 * 117.49776 * 215.00396 * 22 2 1 39 39 H 1.09000 * 117.49760 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3798 2.3042 -0.7737 5 6 1.8225 3.5674 -0.8727 6 8 2.8527 3.8907 -0.3304 7 6 1.0342 4.5827 -1.6592 8 6 1.7420 5.9124 -1.6147 9 6 1.3914 6.8505 -0.6706 10 6 2.0364 8.0767 -0.6313 11 6 3.0446 8.3708 -1.5367 12 6 3.4160 7.4457 -2.4852 13 6 2.7679 6.1975 -2.5345 14 6 3.1411 5.2390 -3.5047 15 1 2.9722 4.1886 -3.3191 16 6 3.7239 5.6520 -4.7082 17 7 3.6603 6.9080 -5.0686 18 14 4.5928 4.4098 -5.7997 19 1 3.6198 3.8275 -6.7586 20 1 5.6822 5.0859 -6.5491 21 1 5.1671 3.3286 -4.9593 22 6 2.2364 -1.1207 0.7652 23 6 2.2364 -1.1207 -0.7654 24 1 3.1713 -0.8747 -1.2690 25 9 1.4339 -2.0674 -1.4113 26 1 -0.3633 0.8478 -0.5808 27 1 -0.3634 -0.9269 -0.4438 28 1 -0.3633 0.0791 1.0246 29 1 3.1829 1.3084 -0.4438 30 1 2.2752 1.7423 1.0245 31 1 0.0394 4.6856 -1.2256 32 1 0.9469 4.2524 -2.6944 33 1 0.6070 6.6324 0.0391 34 1 1.7515 8.8088 0.1098 35 1 3.5408 9.3292 -1.4968 36 1 4.2017 7.6767 -3.1892 37 1 4.0646 7.1943 -5.9026 38 1 3.1714 -0.8746 1.2688 39 1 1.6112 -1.8579 1.2691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822127918.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:33 Heat of formation + Delta-G solvation = -101.440178 kcal Electronic energy + Delta-G solvation = -22904.025174 eV Core-core repulsion = 19305.291470 eV Total energy + Delta-G solvation = -3598.733704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.77947 -40.01802 -38.04071 -37.36076 -35.53506 -33.67880 -31.86895 -29.51561 -28.99158 -27.78093 -26.39480 -25.02041 -22.67909 -21.27901 -20.95327 -19.58651 -19.35036 -17.23993 -17.15688 -16.89020 -16.33124 -15.77504 -15.28960 -15.11983 -14.85000 -14.50766 -13.90941 -13.71691 -13.66217 -13.19303 -12.79133 -12.62993 -12.46412 -12.42179 -12.16419 -11.83205 -11.60419 -11.32837 -11.23912 -11.09757 -11.01155 -10.77116 -10.50564 -10.43117 -10.39519 -9.75616 -9.75174 -9.54863 -9.42758 -9.20682 -7.38719 -7.35833 -6.77574 -4.40998 2.63329 2.83623 2.92288 3.04795 3.09330 3.11959 3.23564 3.36937 3.85060 3.90535 4.33479 4.45876 4.62801 4.72188 4.84251 5.28143 5.33791 5.35515 5.46960 5.64122 5.69022 5.75651 5.81366 5.85909 5.95143 6.05780 6.21469 6.24409 6.38531 6.46873 6.71795 6.93972 7.03470 7.25031 7.37032 7.58873 7.86104 8.00554 8.08223 8.25409 8.43555 8.60003 8.85548 8.95221 10.15459 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.014579 B = 0.004713 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.142369 B = 5939.070056 C = 7420.775400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.135 4.135 3 C 0.103 3.897 4 O -0.362 6.362 5 C 0.459 3.541 6 O -0.493 6.493 7 C -0.041 4.041 8 C -0.196 4.196 9 C -0.077 4.077 10 C -0.240 4.240 11 C -0.105 4.105 12 C -0.158 4.158 13 C 0.130 3.870 14 C -0.457 4.457 15 H 0.073 0.927 16 C 0.077 3.923 17 N -0.792 5.792 18 Si 0.904 3.096 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.262 1.262 22 C -0.178 4.178 23 C 0.023 3.977 24 H 0.134 0.866 25 F -0.181 7.181 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.281 0.719 38 H 0.112 0.888 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 -11.744 6.393 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.135 4.135 3 C 0.029 3.971 4 O -0.280 6.280 5 C 0.302 3.698 6 O -0.378 6.378 7 C -0.078 4.078 8 C -0.197 4.197 9 C -0.095 4.095 10 C -0.259 4.259 11 C -0.123 4.123 12 C -0.178 4.178 13 C 0.127 3.873 14 C -0.486 4.486 15 H 0.091 0.909 16 C -0.141 4.141 17 N -0.418 5.418 18 Si 0.728 3.272 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.215 4.215 23 C -0.013 4.013 24 H 0.152 0.848 25 F -0.161 7.161 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.101 -11.536 6.349 13.528 hybrid contribution 0.586 -0.592 -0.481 0.962 sum -2.515 -12.128 5.868 13.705 Atomic orbital electron populations 1.21234 0.90265 1.03498 1.02466 1.22150 0.97389 0.90034 1.03959 1.22250 0.93192 0.85536 0.96145 1.86518 1.52298 1.21522 1.67686 1.24530 0.85306 0.81018 0.78982 1.90643 1.23887 1.79495 1.43758 1.19992 0.97059 0.90375 1.00404 1.19057 1.02583 0.94145 1.03956 1.20318 0.98458 0.94132 0.96584 1.20320 1.03958 0.97780 1.03851 1.20714 0.97530 0.97868 0.96200 1.21357 1.02072 0.94930 0.99399 1.17351 0.87782 0.92290 0.89865 1.19489 1.35133 0.94484 0.99524 0.90854 1.25885 0.94046 0.95763 0.98363 1.69806 1.34021 1.16701 1.21254 0.86380 0.79690 0.81293 0.79846 1.19345 1.19990 1.18557 1.23849 1.03510 1.00421 0.93730 1.22485 0.95292 0.91847 0.91658 0.84840 1.92781 1.75308 1.65444 1.82610 0.90037 0.91865 0.91910 0.90985 0.90552 0.89338 0.87425 0.89562 0.89520 0.89450 0.86187 0.90836 0.86936 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.72 37.15 0.36 -0.92 16 2 C -0.13 -1.51 2.59 -154.51 -0.40 -1.91 16 3 C 0.10 1.41 5.59 37.16 0.21 1.62 16 4 O -0.36 -5.98 8.79 -39.24 -0.34 -6.33 16 5 C 0.46 9.05 7.59 36.01 0.27 9.33 16 6 O -0.49 -11.31 15.78 -18.75 -0.30 -11.61 16 7 C -0.04 -0.81 5.29 -29.04 -0.15 -0.96 16 8 C -0.20 -4.63 4.43 -103.91 -0.46 -5.09 16 9 C -0.08 -1.73 9.66 -39.66 -0.38 -2.11 16 10 C -0.24 -5.46 10.05 -39.29 -0.39 -5.86 16 11 C -0.10 -2.50 10.02 -39.66 -0.40 -2.90 16 12 C -0.16 -4.16 8.69 -38.87 -0.34 -4.49 16 13 C 0.13 3.41 5.57 -106.83 -0.60 2.81 16 14 C -0.46 -11.85 8.16 -37.74 -0.31 -12.16 16 15 H 0.07 1.85 6.65 -52.49 -0.35 1.50 16 16 C 0.08 1.91 5.19 -17.34 -0.09 1.82 16 17 N -0.79 -20.13 10.86 55.55 0.60 -19.53 16 18 Si 0.90 18.64 29.59 -169.99 -5.03 13.61 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.18 -1.55 9.96 -26.70 -0.27 -1.81 16 23 C 0.02 0.25 7.48 -26.70 -0.20 0.05 16 24 H 0.13 1.27 8.05 -51.93 -0.42 0.85 16 25 F -0.18 -2.27 16.50 2.25 0.04 -2.24 16 26 H 0.08 0.98 6.87 -51.93 -0.36 0.62 16 27 H 0.06 0.67 7.10 -51.93 -0.37 0.30 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 30 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.09 1.46 8.06 -51.93 -0.42 1.04 16 32 H 0.11 2.10 7.05 -51.92 -0.37 1.74 16 33 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.12 3.23 6.13 -52.49 -0.32 2.91 16 37 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 38 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 335.67 15.07 5.06 5.06 Total: -1.00 -29.28 335.67 -8.22 -37.49 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.10 Total: 6.13 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -3.14 Total: -22.59 kcal Atomic # 7 Polarization: -20.13 SS G_CDS: 0.60 Total: -19.53 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.64 Total: -17.94 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.28 -8.22 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822127918.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.948 kcal (2) G-P(sol) polarization free energy of solvation -29.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds