Wall clock time and date at job start Tue Mar 31 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 115.55147 * 2 1 4 4 O 1.45198 * 109.47013 * 325.58529 * 3 2 1 5 5 C 1.34224 * 117.00036 * 179.97438 * 4 3 2 6 6 O 1.20826 * 119.99758 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00103 * 180.02562 * 5 4 3 8 8 C 1.50699 * 109.47113 * 180.02562 * 7 5 4 9 9 C 1.37642 * 120.12856 * 265.27785 * 8 7 5 10 10 C 1.38608 * 120.25140 * 180.30228 * 9 8 7 11 11 C 1.38662 * 120.50063 * 359.71885 * 10 9 8 12 12 C 1.37598 * 120.24524 * 359.97307 * 11 10 9 13 13 C 1.40698 * 120.13096 * 85.00128 * 8 7 5 14 14 C 1.41394 * 120.24023 * 359.96887 * 13 8 7 15 15 H 1.07998 * 120.00756 * 334.51228 * 14 13 8 16 16 C 1.39953 * 119.99608 * 154.23112 * 14 13 8 17 17 N 1.30821 * 119.99838 * 345.01540 * 16 14 13 18 18 Si 1.86799 * 119.99814 * 165.01542 * 16 14 13 19 19 H 1.48502 * 109.47415 * 89.99951 * 18 16 14 20 20 H 1.48506 * 109.47139 * 210.00164 * 18 16 14 21 21 H 1.48503 * 109.47207 * 329.99880 * 18 16 14 22 22 C 1.52997 * 117.50129 * 145.67470 * 2 1 3 23 23 C 1.53002 * 117.49961 * 214.33145 * 2 1 3 24 24 H 1.09004 * 117.50293 * 144.99624 * 23 2 1 25 25 F 1.39905 * 117.49627 * 359.97438 * 23 2 1 26 26 H 1.09000 * 109.47218 * 34.41275 * 1 2 3 27 27 H 1.09004 * 109.47185 * 154.41263 * 1 2 3 28 28 H 1.08997 * 109.46973 * 274.41406 * 1 2 3 29 29 H 1.09000 * 109.46802 * 205.58478 * 3 2 1 30 30 H 1.08992 * 109.46923 * 85.58404 * 3 2 1 31 31 H 1.09004 * 109.47261 * 59.99913 * 7 5 4 32 32 H 1.09009 * 109.47035 * 299.99967 * 7 5 4 33 33 H 1.08000 * 119.87657 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.75449 * 179.69119 * 10 9 8 35 35 H 1.07996 * 119.87511 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.12633 * 180.02562 * 12 11 10 37 37 H 0.97003 * 119.99567 * 179.97438 * 17 16 14 38 38 H 1.09006 * 117.49776 * 215.00396 * 22 2 1 39 39 H 1.09000 * 117.49760 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3798 2.3042 -0.7737 5 6 1.8225 3.5674 -0.8727 6 8 2.8527 3.8907 -0.3304 7 6 1.0342 4.5827 -1.6592 8 6 1.7420 5.9124 -1.6147 9 6 1.3914 6.8505 -0.6706 10 6 2.0364 8.0767 -0.6313 11 6 3.0446 8.3708 -1.5367 12 6 3.4160 7.4457 -2.4852 13 6 2.7679 6.1975 -2.5345 14 6 3.1411 5.2390 -3.5047 15 1 2.9722 4.1886 -3.3191 16 6 3.7239 5.6520 -4.7082 17 7 3.6603 6.9080 -5.0686 18 14 4.5928 4.4098 -5.7997 19 1 3.6198 3.8275 -6.7586 20 1 5.6822 5.0859 -6.5491 21 1 5.1671 3.3286 -4.9593 22 6 2.2364 -1.1207 0.7652 23 6 2.2364 -1.1207 -0.7654 24 1 3.1713 -0.8747 -1.2690 25 9 1.4339 -2.0674 -1.4113 26 1 -0.3633 0.8478 -0.5808 27 1 -0.3634 -0.9269 -0.4438 28 1 -0.3633 0.0791 1.0246 29 1 3.1829 1.3084 -0.4438 30 1 2.2752 1.7423 1.0245 31 1 0.0394 4.6856 -1.2256 32 1 0.9469 4.2524 -2.6944 33 1 0.6070 6.6324 0.0391 34 1 1.7515 8.8088 0.1098 35 1 3.5408 9.3292 -1.4968 36 1 4.2017 7.6767 -3.1892 37 1 4.0646 7.1943 -5.9026 38 1 3.1714 -0.8746 1.2688 39 1 1.6112 -1.8579 1.2691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822127918.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:32 Heat of formation + Delta-G solvation = -114.397058 kcal Electronic energy + Delta-G solvation = -22904.587027 eV Core-core repulsion = 19305.291470 eV Total energy + Delta-G solvation = -3599.295556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.67557 -41.49322 -39.53301 -38.64955 -36.92999 -35.53347 -33.58820 -31.37522 -29.96877 -29.12711 -27.80991 -26.82283 -23.44593 -22.92054 -22.74241 -21.06004 -20.49281 -19.09869 -18.57385 -17.95682 -17.63845 -17.29206 -16.73273 -16.34680 -16.17863 -15.79389 -15.49703 -15.44136 -14.73055 -14.44911 -14.32970 -14.06740 -13.58724 -13.55948 -13.35956 -13.23637 -13.05622 -12.91376 -12.81000 -12.74297 -12.54142 -12.27542 -12.13662 -11.80653 -11.44848 -11.36224 -11.26561 -11.11938 -11.04889 -10.62622 -9.24873 -9.22754 -8.61488 -6.33896 0.91200 1.09046 1.35428 1.37076 1.46150 1.52529 1.80328 2.18360 2.43064 2.76448 3.01807 3.50788 3.52129 3.78380 3.82921 4.02961 4.07881 4.27200 4.30503 4.36814 4.48415 4.57394 4.68214 4.70305 4.78060 4.80215 4.88315 4.96637 5.01135 5.07859 5.16791 5.31728 5.35850 5.48885 5.52289 5.74638 6.01236 6.13307 6.20446 6.38525 6.70431 6.93246 6.95870 7.07450 8.33894 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.014579 B = 0.004713 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.142369 B = 5939.070056 C = 7420.775400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.149 4.149 3 C 0.099 3.901 4 O -0.356 6.356 5 C 0.468 3.532 6 O -0.531 6.531 7 C -0.042 4.042 8 C -0.202 4.202 9 C -0.085 4.085 10 C -0.241 4.241 11 C -0.114 4.114 12 C -0.192 4.192 13 C 0.097 3.903 14 C -0.484 4.484 15 H 0.070 0.930 16 C 0.038 3.962 17 N -0.823 5.823 18 Si 0.969 3.031 19 H -0.257 1.257 20 H -0.266 1.266 21 H -0.266 1.266 22 C -0.148 4.148 23 C 0.008 3.992 24 H 0.142 0.858 25 F -0.194 7.194 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.287 0.713 38 H 0.131 0.869 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -13.121 7.515 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.150 4.150 3 C 0.025 3.975 4 O -0.273 6.273 5 C 0.312 3.688 6 O -0.420 6.420 7 C -0.079 4.079 8 C -0.203 4.203 9 C -0.103 4.103 10 C -0.260 4.260 11 C -0.132 4.132 12 C -0.211 4.211 13 C 0.095 3.905 14 C -0.514 4.514 15 H 0.088 0.912 16 C -0.177 4.177 17 N -0.449 5.449 18 Si 0.790 3.210 19 H -0.182 1.182 20 H -0.190 1.190 21 H -0.190 1.190 22 C -0.185 4.185 23 C -0.028 4.028 24 H 0.159 0.841 25 F -0.174 7.174 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.143 0.857 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.150 0.850 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.846 -12.922 7.474 15.415 hybrid contribution 0.743 -0.157 -0.724 1.050 sum -3.102 -13.078 6.750 15.041 Atomic orbital electron populations 1.21212 0.90073 1.02853 1.03147 1.22127 0.97596 0.89044 1.06226 1.22507 0.93022 0.86110 0.95875 1.86494 1.52413 1.20555 1.67830 1.24347 0.84433 0.81901 0.78113 1.90629 1.25402 1.80365 1.45563 1.20004 0.98342 0.88817 1.00755 1.19475 1.01711 0.96052 1.03097 1.20760 0.99049 0.93750 0.96717 1.20741 1.02988 0.98595 1.03709 1.20998 0.98030 0.98295 0.95872 1.21362 1.02862 0.96284 1.00631 1.17729 0.88996 0.92638 0.91115 1.19640 1.36978 0.94302 1.00485 0.91218 1.26644 0.94219 0.97510 0.99338 1.69863 1.34777 1.18255 1.22005 0.85394 0.78797 0.78724 0.78038 1.18179 1.19047 1.19011 1.23974 1.03904 0.98351 0.92272 1.22727 0.95250 0.91527 0.93301 0.84073 1.92754 1.75732 1.65840 1.83071 0.91589 0.91725 0.90448 0.91386 0.89973 0.85701 0.87666 0.86169 0.86446 0.87505 0.88131 0.90233 0.85042 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 9.72 71.98 0.70 -1.62 16 2 C -0.15 -3.07 2.59 -52.18 -0.13 -3.20 16 3 C 0.10 2.57 5.59 71.98 0.40 2.97 16 4 O -0.36 -11.41 8.79 -51.36 -0.45 -11.86 16 5 C 0.47 18.17 7.59 71.24 0.54 18.71 16 6 O -0.53 -24.41 15.78 21.96 0.35 -24.06 16 7 C -0.04 -1.62 5.29 29.10 0.15 -1.47 16 8 C -0.20 -9.49 4.43 -19.40 -0.09 -9.58 16 9 C -0.08 -3.68 9.66 22.22 0.21 -3.46 16 10 C -0.24 -10.60 10.05 22.46 0.23 -10.37 16 11 C -0.11 -5.44 10.02 22.22 0.22 -5.22 16 12 C -0.19 -10.39 8.69 22.73 0.20 -10.19 16 13 C 0.10 5.24 5.57 -21.29 -0.12 5.13 16 14 C -0.48 -25.85 8.16 23.46 0.19 -25.66 16 15 H 0.07 3.62 6.65 -2.91 -0.02 3.60 16 16 C 0.04 1.91 5.19 85.26 0.44 2.35 16 17 N -0.82 -43.05 10.86 21.83 0.24 -42.81 16 18 Si 0.97 38.73 29.59 68.60 2.03 40.76 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 22 C -0.15 -2.14 9.96 30.62 0.30 -1.83 16 23 C 0.01 0.15 7.48 30.62 0.23 0.38 16 24 H 0.14 2.49 8.05 -2.39 -0.02 2.47 16 25 F -0.19 -4.59 16.50 44.97 0.74 -3.85 16 26 H 0.07 1.51 6.87 -2.39 -0.02 1.49 16 27 H 0.06 1.27 7.10 -2.38 -0.02 1.25 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.83 7.89 -2.39 -0.02 1.81 16 30 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 31 H 0.13 3.81 8.06 -2.39 -0.02 3.79 16 32 H 0.11 4.11 7.05 -2.38 -0.02 4.09 16 33 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 34 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 36 H 0.10 5.70 6.13 -2.91 -0.02 5.69 16 37 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 38 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -64.43 335.67 7.45 -56.98 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 1.06 Total: 27.91 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 3.49 Total: -43.06 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.24 Total: -42.81 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -0.10 Total: -35.92 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.74 Total: -3.85 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -64.43 7.45 -56.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822127918.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.421 kcal (2) G-P(sol) polarization free energy of solvation -64.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds