Wall clock time and date at job start Tue Mar 31 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35235 * 126.06464 * 2 1 4 4 C 1.40410 * 107.86418 * 180.24182 * 3 2 1 5 5 N 1.40162 * 125.97361 * 179.76079 * 4 3 2 6 6 C 1.34773 * 120.00019 * 0.02562 * 5 4 3 7 7 O 1.21297 * 120.00086 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00007 * 180.02562 * 6 5 4 9 9 H 1.08997 * 110.89254 * 307.44049 * 8 6 5 10 10 C 1.54767 * 111.01439 * 71.38986 * 8 6 5 11 11 C 1.51682 * 102.48061 * 142.01275 * 10 8 6 12 12 C 1.50694 * 125.76874 * 164.74602 * 11 10 8 13 13 N 1.27642 * 108.46176 * 344.71554 * 11 10 8 14 14 O 1.41387 * 113.17285 * 359.68143 * 13 11 10 15 15 N 1.31212 * 108.05504 * 359.75831 * 4 3 2 16 16 N 1.34963 * 126.06978 * 179.82721 * 2 1 3 17 17 C 1.46495 * 125.97759 * 0.02562 * 16 2 1 18 18 C 1.50703 * 109.47395 * 269.71790 * 17 16 2 19 19 H 1.07994 * 119.99603 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99838 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00380 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99776 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99769 * 22 20 18 26 26 H 1.08997 * 109.46873 * 270.17243 * 1 2 3 27 27 H 1.08997 * 109.47424 * 30.17386 * 1 2 3 28 28 H 1.09000 * 109.46828 * 150.17669 * 1 2 3 29 29 H 1.08002 * 126.07320 * 0.02562 * 3 2 1 30 30 H 0.96996 * 120.00046 * 180.02562 * 5 4 3 31 31 H 1.08998 * 110.80525 * 260.25841 * 10 8 6 32 32 H 1.09005 * 110.80388 * 23.76043 * 10 8 6 33 33 H 1.09004 * 109.47330 * 179.97438 * 12 11 10 34 34 H 1.08998 * 109.46930 * 299.94181 * 12 11 10 35 35 H 1.09001 * 109.47728 * 59.94552 * 12 11 10 36 36 H 1.09005 * 109.47411 * 149.71725 * 17 16 2 37 37 H 1.08998 * 109.46900 * 29.71804 * 17 16 2 38 38 H 0.97001 * 119.99667 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0056 5 7 4.7734 1.4750 -0.0122 6 6 4.6366 2.8158 -0.0130 7 8 3.5300 3.3125 -0.0086 8 6 5.8585 3.6979 -0.0207 9 1 6.5404 3.4244 0.7845 10 6 6.5709 3.6473 -1.3937 11 6 7.0220 5.0832 -1.5820 12 6 8.0405 5.5624 -2.5840 13 7 6.3926 5.8172 -0.7487 14 8 5.4915 5.0905 0.0630 15 7 3.6337 -0.6575 -0.0036 16 7 2.3017 -1.0909 0.0033 17 6 1.8501 -2.4845 0.0070 18 6 1.7014 -2.9607 1.4290 19 1 1.9217 -2.2922 2.2481 20 6 1.2852 -4.2501 1.6843 21 7 1.0174 -5.0643 0.6868 22 14 1.1001 -4.8401 3.4469 23 1 1.4597 -3.7401 4.3775 24 1 2.0007 -5.9980 3.6785 25 1 -0.3065 -5.2516 3.6862 26 1 -0.3633 0.0031 1.0276 27 1 -0.3634 0.8884 -0.5165 28 1 -0.3633 -0.8916 -0.5111 29 1 1.9719 2.1211 0.0004 30 1 5.6583 1.0778 -0.0162 31 1 7.4272 2.9737 -1.3610 32 1 5.8756 3.3535 -2.1801 33 1 8.1620 6.6416 -2.4910 34 1 8.9952 5.0720 -2.3944 35 1 7.7013 5.3201 -3.5912 36 1 2.5825 -3.1052 -0.5093 37 1 0.8893 -2.5564 -0.5026 38 1 1.1132 -4.7578 -0.2285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831538904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:13 Heat of formation + Delta-G solvation = 62.825228 kcal Electronic energy + Delta-G solvation = -22544.415814 eV Core-core repulsion = 19005.017905 eV Total energy + Delta-G solvation = -3539.397909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20637 -40.54777 -38.94737 -35.13348 -34.23439 -33.79439 -31.96887 -31.26612 -30.57248 -28.87217 -26.57640 -26.47506 -25.01448 -23.08084 -21.62965 -20.29922 -19.97000 -19.50137 -17.68993 -17.13265 -16.84811 -16.24741 -16.10108 -15.49198 -15.10780 -14.90454 -14.32169 -14.04136 -13.86002 -13.68580 -13.39066 -13.22394 -12.97143 -12.70188 -12.65124 -12.46500 -12.35675 -12.02583 -11.89405 -11.59306 -11.11276 -11.06950 -10.78792 -10.56650 -10.24062 -10.21455 -9.97810 -9.59818 -9.11276 -8.62763 -8.11235 -7.59988 -6.63830 -4.40077 1.37939 1.99189 2.17054 2.71420 2.91395 3.33768 3.35992 3.45765 3.51384 3.56449 3.67929 4.01321 4.09633 4.29150 4.35714 4.51083 4.84739 4.93010 4.96954 5.09152 5.11215 5.20004 5.28640 5.53462 5.61682 5.74743 5.98629 6.05783 6.29041 6.35820 6.50327 6.60215 6.70704 6.97270 7.22984 7.43628 7.62568 7.77184 7.99206 8.24930 8.47243 8.52716 9.28894 10.72914 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031937 B = 0.002953 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.521442 B = 9478.217468 C = 9646.432899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.095 3.905 3 C -0.289 4.289 4 C 0.264 3.736 5 N -0.624 5.624 6 C 0.523 3.477 7 O -0.488 6.488 8 C 0.031 3.969 9 H 0.117 0.883 10 C -0.146 4.146 11 C 0.086 3.914 12 C -0.087 4.087 13 N -0.288 5.288 14 O -0.168 6.168 15 N -0.317 5.317 16 N -0.313 5.313 17 C 0.249 3.751 18 C -0.615 4.615 19 H 0.060 0.940 20 C 0.026 3.974 21 N -0.903 5.903 22 Si 1.080 2.920 23 H -0.288 1.288 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.161 0.839 30 H 0.412 0.588 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.364 16.073 -6.585 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.320 4.320 4 C 0.012 3.988 5 N -0.274 5.274 6 C 0.306 3.694 7 O -0.359 6.359 8 C -0.032 4.032 9 H 0.135 0.865 10 C -0.186 4.186 11 C -0.108 4.108 12 C -0.145 4.145 13 N -0.029 5.029 14 O -0.185 6.185 15 N -0.147 5.147 16 N -0.095 5.095 17 C 0.130 3.870 18 C -0.653 4.653 19 H 0.078 0.922 20 C -0.179 4.179 21 N -0.538 5.538 22 Si 0.908 3.092 23 H -0.214 1.214 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.178 0.822 30 H 0.247 0.753 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.475 15.073 -5.152 19.632 hybrid contribution 0.629 0.725 -1.059 1.429 sum 12.104 15.798 -6.211 20.849 Atomic orbital electron populations 1.20349 0.87683 1.02851 1.03388 1.21080 0.95013 0.86976 1.00612 1.21260 0.89674 0.99898 1.21128 1.18901 0.87009 0.89531 1.03402 1.42250 1.07826 1.04515 1.72773 1.19923 0.90398 0.81568 0.77534 1.90719 1.25923 1.73558 1.45669 1.23433 0.94959 0.85702 0.99097 0.86516 1.23117 1.02192 0.96439 0.96820 1.26284 0.96222 0.93336 0.94950 1.20463 0.95261 1.03019 0.95755 1.77988 1.01573 1.19611 1.03775 1.91438 1.49809 1.13862 1.63367 1.77254 0.99761 1.08375 1.29332 1.48721 1.01048 1.07419 1.52330 1.19743 0.95046 0.72506 0.99657 1.22218 1.51217 1.00896 0.90979 0.92190 1.25912 0.92980 0.92536 1.06481 1.70787 1.44845 1.37990 1.00160 0.83368 0.77081 0.75635 0.73155 1.21352 1.20971 1.20928 0.90185 0.90580 0.91006 0.82191 0.75310 0.86610 0.87185 0.89734 0.89045 0.89002 0.93965 0.93801 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.11 36.01 0.36 -1.08 16 2 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 3 C -0.29 -5.92 9.52 -39.83 -0.38 -6.29 16 4 C 0.26 5.23 8.11 -154.39 -1.25 3.98 16 5 N -0.62 -9.09 5.45 -11.13 -0.06 -9.15 16 6 C 0.52 7.56 7.10 -10.99 -0.08 7.49 16 7 O -0.49 -9.12 13.72 -13.26 -0.18 -9.30 16 8 C 0.03 0.33 4.25 -26.95 -0.11 0.21 16 9 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 10 C -0.15 -1.04 6.62 -26.47 -0.18 -1.22 16 11 C 0.09 0.67 7.45 -78.58 -0.59 0.08 16 12 C -0.09 -0.32 10.49 36.00 0.38 0.06 16 13 N -0.29 -3.44 12.45 35.64 0.44 -3.00 16 14 O -0.17 -2.40 11.84 -30.17 -0.36 -2.76 16 15 N -0.32 -7.14 12.59 31.44 0.40 -6.74 16 16 N -0.31 -7.35 3.59 -58.33 -0.21 -7.56 16 17 C 0.25 6.26 5.31 -5.19 -0.03 6.23 16 18 C -0.61 -16.96 9.39 -34.44 -0.32 -17.29 16 19 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 20 C 0.03 0.72 5.46 -17.82 -0.10 0.62 16 21 N -0.90 -25.86 13.65 55.43 0.76 -25.10 16 22 Si 1.08 24.59 29.90 -169.99 -5.08 19.51 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.22 7.06 -51.93 -0.37 0.85 16 29 H 0.16 3.23 5.92 -52.49 -0.31 2.92 16 30 H 0.41 4.45 8.82 -40.82 -0.36 4.09 16 31 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.84 7.90 -51.93 -0.41 0.43 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 35 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.04 1.11 8.01 -51.93 -0.42 0.69 16 37 H 0.04 1.08 6.90 -51.93 -0.36 0.72 16 38 H 0.27 7.55 7.22 -40.82 -0.29 7.25 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -36.04 331.87 -6.84 -42.87 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.68 Total: 2.01 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.86 Total: -5.79 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 1.33 Total: -51.54 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.54 Total: -12.06 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.08 Total: 19.51 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.04 -6.84 -42.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831538904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.698 kcal (2) G-P(sol) polarization free energy of solvation -36.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds