Wall clock time and date at job start Tue Mar 31 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35235 * 126.06464 * 2 1 4 4 C 1.40410 * 107.86418 * 180.24182 * 3 2 1 5 5 N 1.40162 * 125.97361 * 179.76079 * 4 3 2 6 6 C 1.34773 * 120.00019 * 0.02562 * 5 4 3 7 7 O 1.21297 * 120.00086 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00007 * 180.02562 * 6 5 4 9 9 H 1.08997 * 110.89254 * 307.44049 * 8 6 5 10 10 C 1.54767 * 111.01439 * 71.38986 * 8 6 5 11 11 C 1.51682 * 102.48061 * 142.01275 * 10 8 6 12 12 C 1.50694 * 125.76874 * 164.74602 * 11 10 8 13 13 N 1.27642 * 108.46176 * 344.71554 * 11 10 8 14 14 O 1.41387 * 113.17285 * 359.68143 * 13 11 10 15 15 N 1.31212 * 108.05504 * 359.75831 * 4 3 2 16 16 N 1.34963 * 126.06978 * 179.82721 * 2 1 3 17 17 C 1.46495 * 125.97759 * 0.02562 * 16 2 1 18 18 C 1.50703 * 109.47395 * 269.71790 * 17 16 2 19 19 H 1.07994 * 119.99603 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99838 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00380 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99776 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99769 * 22 20 18 26 26 H 1.08997 * 109.46873 * 270.17243 * 1 2 3 27 27 H 1.08997 * 109.47424 * 30.17386 * 1 2 3 28 28 H 1.09000 * 109.46828 * 150.17669 * 1 2 3 29 29 H 1.08002 * 126.07320 * 0.02562 * 3 2 1 30 30 H 0.96996 * 120.00046 * 180.02562 * 5 4 3 31 31 H 1.08998 * 110.80525 * 260.25841 * 10 8 6 32 32 H 1.09005 * 110.80388 * 23.76043 * 10 8 6 33 33 H 1.09004 * 109.47330 * 179.97438 * 12 11 10 34 34 H 1.08998 * 109.46930 * 299.94181 * 12 11 10 35 35 H 1.09001 * 109.47728 * 59.94552 * 12 11 10 36 36 H 1.09005 * 109.47411 * 149.71725 * 17 16 2 37 37 H 1.08998 * 109.46900 * 29.71804 * 17 16 2 38 38 H 0.97001 * 119.99667 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0056 5 7 4.7734 1.4750 -0.0122 6 6 4.6366 2.8158 -0.0130 7 8 3.5300 3.3125 -0.0086 8 6 5.8585 3.6979 -0.0207 9 1 6.5404 3.4244 0.7845 10 6 6.5709 3.6473 -1.3937 11 6 7.0220 5.0832 -1.5820 12 6 8.0405 5.5624 -2.5840 13 7 6.3926 5.8172 -0.7487 14 8 5.4915 5.0905 0.0630 15 7 3.6337 -0.6575 -0.0036 16 7 2.3017 -1.0909 0.0033 17 6 1.8501 -2.4845 0.0070 18 6 1.7014 -2.9607 1.4290 19 1 1.9217 -2.2922 2.2481 20 6 1.2852 -4.2501 1.6843 21 7 1.0174 -5.0643 0.6868 22 14 1.1001 -4.8401 3.4469 23 1 1.4597 -3.7401 4.3775 24 1 2.0007 -5.9980 3.6785 25 1 -0.3065 -5.2516 3.6862 26 1 -0.3633 0.0031 1.0276 27 1 -0.3634 0.8884 -0.5165 28 1 -0.3633 -0.8916 -0.5111 29 1 1.9719 2.1211 0.0004 30 1 5.6583 1.0778 -0.0162 31 1 7.4272 2.9737 -1.3610 32 1 5.8756 3.3535 -2.1801 33 1 8.1620 6.6416 -2.4910 34 1 8.9952 5.0720 -2.3944 35 1 7.7013 5.3201 -3.5912 36 1 2.5825 -3.1052 -0.5093 37 1 0.8893 -2.5564 -0.5026 38 1 1.1132 -4.7578 -0.2285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831538904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:13 Heat of formation + Delta-G solvation = 37.979913 kcal Electronic energy + Delta-G solvation = -22545.493188 eV Core-core repulsion = 19005.017905 eV Total energy + Delta-G solvation = -3540.475282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.54951 -41.69268 -40.11325 -36.63956 -35.68049 -34.94119 -33.37515 -32.75280 -31.85552 -29.32120 -28.33530 -28.01853 -26.16164 -24.93163 -22.86515 -21.56419 -21.09486 -20.75297 -19.30212 -18.59455 -17.95652 -17.53317 -17.09208 -16.90175 -16.42106 -16.01924 -15.81177 -15.64802 -14.99811 -14.74995 -14.48201 -14.42241 -13.95538 -13.86234 -13.78225 -13.70625 -13.52105 -13.39513 -13.17484 -12.84921 -12.71875 -12.57225 -12.10872 -12.00700 -11.73978 -11.71692 -11.20703 -11.05405 -10.71481 -10.53896 -9.74745 -9.31567 -8.79795 -6.60875 0.67254 0.78171 0.94214 1.19745 1.50156 1.57096 1.74234 1.80066 1.99948 2.30715 2.46150 2.90045 2.97881 3.26127 3.38451 3.50435 3.72110 3.80797 3.98418 4.27402 4.36751 4.45858 4.51979 4.60408 4.68321 4.69028 4.72711 4.77482 4.81532 4.84293 4.98244 5.10309 5.29229 5.53519 5.71883 5.85656 6.05286 6.20387 6.30211 6.36377 6.75477 6.90979 7.15480 8.54631 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031937 B = 0.002953 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.521442 B = 9478.217468 C = 9646.432899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.300 4.300 4 C 0.275 3.725 5 N -0.610 5.610 6 C 0.526 3.474 7 O -0.534 6.534 8 C 0.033 3.967 9 H 0.148 0.852 10 C -0.142 4.142 11 C 0.110 3.890 12 C -0.088 4.088 13 N -0.334 5.334 14 O -0.218 6.218 15 N -0.348 5.348 16 N -0.339 5.339 17 C 0.262 3.738 18 C -0.625 4.625 19 H 0.041 0.959 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 1.123 2.877 23 H -0.282 1.282 24 H -0.274 1.274 25 H -0.269 1.269 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.163 0.837 30 H 0.431 0.569 31 H 0.164 0.836 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.024 0.976 37 H 0.048 0.952 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.103 16.568 -6.902 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.331 4.331 4 C 0.020 3.980 5 N -0.261 5.261 6 C 0.311 3.689 7 O -0.407 6.407 8 C -0.029 4.029 9 H 0.166 0.834 10 C -0.181 4.181 11 C -0.083 4.083 12 C -0.145 4.145 13 N -0.080 5.080 14 O -0.232 6.232 15 N -0.179 5.179 16 N -0.122 5.122 17 C 0.142 3.858 18 C -0.663 4.663 19 H 0.059 0.941 20 C -0.214 4.214 21 N -0.555 5.555 22 Si 0.944 3.056 23 H -0.208 1.208 24 H -0.200 1.200 25 H -0.194 1.194 26 H 0.102 0.898 27 H 0.125 0.875 28 H 0.088 0.912 29 H 0.181 0.819 30 H 0.270 0.730 31 H 0.182 0.818 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.237 15.571 -5.480 21.159 hybrid contribution 0.192 0.702 -1.081 1.303 sum 13.429 16.273 -6.561 22.095 Atomic orbital electron populations 1.20488 0.85281 1.04303 1.04046 1.21734 0.96707 0.86356 0.99257 1.21426 0.90240 0.99832 1.21599 1.19223 0.88580 0.89184 1.00965 1.42297 1.07341 1.04265 1.72237 1.20766 0.91248 0.81339 0.75540 1.90688 1.28196 1.74264 1.47598 1.23593 0.93115 0.83811 1.02401 0.83435 1.23255 1.03405 0.97031 0.94404 1.27060 0.94505 0.93299 0.93400 1.20740 0.95310 1.03183 0.95297 1.78053 1.03589 1.20107 1.06256 1.91397 1.51728 1.15351 1.64694 1.77178 0.99696 1.09690 1.31321 1.48550 1.01906 1.07132 1.54583 1.19372 0.94593 0.73592 0.98225 1.22350 1.51398 1.00986 0.91615 0.94105 1.27246 0.92002 0.92696 1.09464 1.70883 1.46058 1.38358 1.00242 0.82825 0.78014 0.75653 0.69072 1.20762 1.19958 1.19359 0.89792 0.87455 0.91180 0.81919 0.73003 0.81839 0.87395 0.90008 0.85939 0.87042 0.95842 0.93411 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.80 10.11 71.24 0.72 -2.08 16 2 C 0.09 3.78 6.92 41.39 0.29 4.07 16 3 C -0.30 -12.35 9.52 22.11 0.21 -12.14 16 4 C 0.27 10.84 8.11 133.33 1.08 11.92 16 5 N -0.61 -17.02 5.45 -307.51 -1.68 -18.70 16 6 C 0.53 14.78 7.10 87.66 0.62 15.40 16 7 O -0.53 -20.16 13.72 14.90 0.20 -19.95 16 8 C 0.03 0.64 4.25 30.45 0.13 0.77 16 9 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 10 C -0.14 -1.56 6.62 30.76 0.20 -1.35 16 11 C 0.11 1.42 7.45 46.89 0.35 1.77 16 12 C -0.09 -0.31 10.49 71.23 0.75 0.44 16 13 N -0.33 -7.68 12.45 -40.62 -0.51 -8.19 16 14 O -0.22 -6.23 11.84 -20.33 -0.24 -6.47 16 15 N -0.35 -15.85 12.59 -54.45 -0.69 -16.54 16 16 N -0.34 -16.22 3.59 -338.45 -1.22 -17.43 16 17 C 0.26 13.49 5.31 85.63 0.45 13.95 16 18 C -0.63 -35.05 9.39 25.60 0.24 -34.81 16 19 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 20 C -0.01 -0.75 5.46 84.65 0.46 -0.29 16 21 N -0.92 -52.94 13.65 21.45 0.29 -52.65 16 22 Si 1.12 48.96 29.90 68.60 2.05 51.01 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.07 2.37 7.06 -2.39 -0.02 2.35 16 29 H 0.16 6.63 5.92 -2.91 -0.02 6.62 16 30 H 0.43 8.41 8.82 -92.71 -0.82 7.59 16 31 H 0.16 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.11 1.34 7.90 -2.38 -0.02 1.32 16 33 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.02 1.28 8.01 -2.38 -0.02 1.26 16 37 H 0.05 2.40 6.90 -2.39 -0.02 2.38 16 38 H 0.26 14.98 7.22 -92.71 -0.67 14.31 16 Total: -1.00 -81.61 331.87 4.12 -77.49 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.39 Total: 13.78 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.51 Total: -2.36 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -3.79 Total: -113.50 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.04 Total: -26.43 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.05 Total: 51.01 kcal Total: -81.61 4.12 -77.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831538904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.475 kcal (2) G-P(sol) polarization free energy of solvation -81.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds