Wall clock time and date at job start Tue Mar 31 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38277 * 119.97622 * 2 1 4 4 C 1.38166 * 120.02812 * 179.97438 * 3 2 1 5 5 C 1.38483 * 119.97483 * 0.02562 * 4 3 2 6 6 F 1.35100 * 120.02954 * 179.97438 * 5 4 3 7 7 C 1.38443 * 119.95018 * 359.97438 * 5 4 3 8 8 C 1.50694 * 120.01654 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47222 * 280.00075 * 8 7 5 10 10 O 1.20834 * 119.99847 * 359.97438 * 9 8 7 11 11 O 1.34230 * 120.00270 * 180.02562 * 9 8 7 12 12 C 1.45201 * 116.99900 * 185.34142 * 11 9 8 13 13 C 1.50702 * 112.90895 * 54.04176 * 12 11 9 14 14 H 1.08001 * 120.00318 * 246.15239 * 13 12 11 15 15 C 1.37882 * 120.00077 * 66.14413 * 13 12 11 16 16 N 1.31510 * 119.99881 * 353.98897 * 15 13 12 17 17 Si 1.86798 * 119.99690 * 173.98405 * 15 13 12 18 18 H 1.48500 * 109.47217 * 60.00857 * 17 15 13 19 19 H 1.48506 * 109.46740 * 180.02562 * 17 15 13 20 20 H 1.48490 * 109.47461 * 300.00162 * 17 15 13 21 21 C 1.53779 * 113.61225 * 185.28681 * 12 11 9 22 22 C 1.53782 * 87.16989 * 89.16047 * 21 12 11 23 23 C 1.53778 * 87.08268 * 25.39145 * 22 21 12 24 24 C 1.38221 * 119.97197 * 0.27594 * 7 5 4 25 25 H 1.09009 * 109.46555 * 89.99957 * 1 2 3 26 26 H 1.08999 * 109.47117 * 209.99903 * 1 2 3 27 27 H 1.08998 * 109.47240 * 330.00388 * 1 2 3 28 28 H 1.08006 * 119.98030 * 359.97330 * 3 2 1 29 29 H 1.08003 * 120.01575 * 179.97438 * 4 3 2 30 30 H 1.08995 * 109.47608 * 160.00021 * 8 7 5 31 31 H 1.09007 * 109.47274 * 39.99830 * 8 7 5 32 32 H 0.96996 * 119.99805 * 185.02930 * 16 15 13 33 33 H 1.08999 * 113.61894 * 334.57045 * 21 12 11 34 34 H 1.09005 * 113.61461 * 203.74762 * 21 12 11 35 35 H 1.09005 * 113.61629 * 139.93903 * 22 21 12 36 36 H 1.08998 * 113.61617 * 270.75683 * 22 21 12 37 37 H 1.09002 * 113.61776 * 89.11449 * 23 22 21 38 38 H 1.09002 * 113.61353 * 219.93765 * 23 22 21 39 39 H 1.07996 * 119.98586 * 179.72675 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1978 0.0000 4 6 3.5795 1.1991 0.0005 5 6 4.2725 0.0001 0.0005 6 9 5.6235 0.0000 0.0005 7 6 3.5798 -1.1986 0.0005 8 6 4.3324 -2.5042 0.0011 9 6 4.7976 -2.8165 -1.3978 10 8 4.5436 -2.0570 -2.3027 11 8 5.4932 -3.9388 -1.6390 12 6 6.0113 -4.1172 -2.9837 13 6 6.8433 -2.9509 -3.4512 14 1 6.4988 -2.3350 -4.2688 15 6 8.0445 -2.6700 -2.8351 16 7 8.4085 -3.3438 -1.7660 17 14 9.1546 -1.3326 -3.5192 18 1 8.4326 -0.0350 -3.5057 19 1 10.3770 -1.2280 -2.6825 20 1 9.5372 -1.6717 -4.9133 21 6 6.6824 -5.4823 -3.2092 22 6 5.2971 -6.0103 -3.6178 23 6 4.9454 -4.5632 -4.0011 24 6 2.1976 -1.1974 -0.0052 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6571 2.1327 -0.0004 29 1 4.1190 2.1347 0.0001 30 1 3.6771 -3.3012 0.3525 31 1 5.1957 -2.4257 0.6620 32 1 9.2171 -3.0982 -1.2900 33 1 7.0701 -5.9344 -2.2963 34 1 7.4075 -5.4832 -4.0231 35 1 5.3231 -6.6930 -4.4672 36 1 4.7130 -6.3963 -2.7823 37 1 5.1953 -4.3115 -5.0318 38 1 3.9304 -4.2737 -3.7288 39 1 1.6571 -2.1323 -0.0097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835400626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:16 Heat of formation + Delta-G solvation = -90.072373 kcal Electronic energy + Delta-G solvation = -23891.402881 eV Core-core repulsion = 20293.162122 eV Total energy + Delta-G solvation = -3598.240759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.47178 -39.57099 -38.86108 -36.95658 -34.01533 -33.09114 -32.29198 -31.88744 -28.01418 -26.50473 -26.28359 -24.52384 -22.95132 -22.34937 -21.27789 -19.71245 -18.14373 -17.26650 -17.05862 -16.45206 -15.69858 -15.23504 -14.92750 -14.83911 -14.63570 -14.34993 -13.96844 -13.81497 -13.62123 -13.29040 -13.18505 -12.97738 -12.25600 -12.07215 -11.87955 -11.54677 -11.44976 -11.29645 -11.24433 -11.08532 -10.83612 -10.79457 -10.44993 -9.99928 -9.93554 -9.90026 -9.25686 -8.80841 -8.74074 -8.44241 -8.34403 -8.23528 -6.03928 -4.13054 1.30262 1.35810 3.32643 3.36858 3.42193 3.50356 3.63883 4.18945 4.43430 4.55218 4.73139 4.83139 4.92740 5.22582 5.27409 5.28010 5.53954 5.54497 5.68639 5.70485 5.75972 5.80691 5.85289 5.87068 6.05696 6.18561 6.26893 6.33661 6.44621 6.46412 6.50411 6.57170 6.81005 6.85830 7.06674 7.21213 7.28966 7.57732 7.85864 7.95884 8.41280 8.88782 9.28377 9.55382 11.00575 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.005924 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.354023 B = 4725.611976 C = 5815.397542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.096 4.096 4 C -0.154 4.154 5 C 0.118 3.882 6 F -0.130 7.130 7 C -0.091 4.091 8 C -0.082 4.082 9 C 0.469 3.531 10 O -0.499 6.499 11 O -0.341 6.341 12 C 0.235 3.765 13 C -0.518 4.518 14 H 0.065 0.935 15 C 0.077 3.923 16 N -0.867 5.867 17 Si 0.889 3.111 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.095 4.095 22 C -0.151 4.151 23 C -0.152 4.152 24 C -0.081 4.081 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.263 0.737 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.384 3.331 5.930 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.105 4.105 3 C -0.114 4.114 4 C -0.172 4.172 5 C 0.099 3.901 6 F -0.108 7.108 7 C -0.092 4.092 8 C -0.120 4.120 9 C 0.310 3.690 10 O -0.387 6.387 11 O -0.257 6.257 12 C 0.201 3.799 13 C -0.555 4.555 14 H 0.083 0.917 15 C -0.129 4.129 16 N -0.503 5.503 17 Si 0.716 3.284 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.133 4.133 22 C -0.189 4.189 23 C -0.189 4.189 24 C -0.099 4.099 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.214 3.440 5.713 13.916 hybrid contribution 1.050 0.911 -0.365 1.438 sum -11.164 4.352 5.348 13.121 Atomic orbital electron populations 1.20735 0.90911 1.02568 1.02371 1.19845 0.96227 0.92885 1.01504 1.20785 0.92950 0.97769 0.99884 1.21068 0.95005 0.96888 1.04285 1.17556 0.77276 0.94005 1.01311 1.91554 1.28560 1.97313 1.93401 1.19462 0.94115 0.93283 1.02361 1.20255 1.01432 0.94687 0.95646 1.22462 0.76317 0.80499 0.89742 1.90574 1.53523 1.48245 1.46344 1.86342 1.62484 1.39074 1.37847 1.20628 0.89234 0.94470 0.75568 1.21116 1.02120 1.13942 1.18355 0.91713 1.25036 0.97333 0.95753 0.94737 1.69996 1.24519 1.38930 1.16905 0.86698 0.79904 0.82650 0.79165 1.20057 1.21155 1.19952 1.22727 0.94464 0.95560 1.00539 1.22982 0.99559 0.96486 0.99865 1.23459 0.99203 0.95455 1.00831 1.20748 0.92143 0.98099 0.98943 0.91172 0.91547 0.91666 0.85446 0.84953 0.87734 0.87320 0.92772 0.91898 0.90026 0.92995 0.91360 0.90223 0.93275 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16 2 C -0.10 -1.30 5.88 -104.61 -0.62 -1.91 16 3 C -0.10 -1.19 9.70 -39.59 -0.38 -1.58 16 4 C -0.15 -2.27 10.03 -39.52 -0.40 -2.67 16 5 C 0.12 2.14 7.13 -39.42 -0.28 1.86 16 6 F -0.13 -2.73 16.66 2.25 0.04 -2.69 16 7 C -0.09 -1.57 4.43 -104.56 -0.46 -2.03 16 8 C -0.08 -1.50 5.67 -29.04 -0.16 -1.67 16 9 C 0.47 11.12 7.50 36.01 0.27 11.39 16 10 O -0.50 -13.16 14.35 -18.76 -0.27 -13.43 16 11 O -0.34 -8.68 9.91 -39.26 -0.39 -9.07 16 12 C 0.24 6.03 0.35 -90.87 -0.03 6.00 16 13 C -0.52 -14.74 6.82 -34.44 -0.23 -14.97 16 14 H 0.06 1.91 7.82 -52.49 -0.41 1.50 16 15 C 0.08 2.17 5.36 -17.82 -0.10 2.08 16 16 N -0.87 -24.90 12.80 55.43 0.71 -24.19 16 17 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 18 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.10 -2.21 7.01 -25.92 -0.18 -2.39 16 22 C -0.15 -2.99 8.03 -25.92 -0.21 -3.20 16 23 C -0.15 -3.40 7.09 -25.83 -0.18 -3.58 16 24 C -0.08 -1.15 9.32 -39.59 -0.37 -1.52 16 25 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.10 1.52 8.01 -51.93 -0.42 1.10 16 31 H 0.11 1.99 7.95 -51.93 -0.41 1.57 16 32 H 0.26 7.24 8.32 -40.82 -0.34 6.90 16 33 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.89 8.09 -51.93 -0.42 1.47 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.08 1.75 8.09 -51.93 -0.42 1.33 16 38 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 39 H 0.13 1.53 8.04 -52.49 -0.42 1.11 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -32.73 338.16 -8.25 -40.98 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.43 Total: 0.95 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.98 Total: -14.81 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.71 Total: -24.19 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.66 Total: -22.50 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.73 -8.25 -40.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835400626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.093 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds