Wall clock time and date at job start Tue Mar 31 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38277 * 119.97622 * 2 1 4 4 C 1.38166 * 120.02812 * 179.97438 * 3 2 1 5 5 C 1.38483 * 119.97483 * 0.02562 * 4 3 2 6 6 F 1.35100 * 120.02954 * 179.97438 * 5 4 3 7 7 C 1.38443 * 119.95018 * 359.97438 * 5 4 3 8 8 C 1.50694 * 120.01654 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47222 * 280.00075 * 8 7 5 10 10 O 1.20834 * 119.99847 * 359.97438 * 9 8 7 11 11 O 1.34230 * 120.00270 * 180.02562 * 9 8 7 12 12 C 1.45201 * 116.99900 * 185.34142 * 11 9 8 13 13 C 1.50702 * 112.90895 * 54.04176 * 12 11 9 14 14 H 1.08001 * 120.00318 * 246.15239 * 13 12 11 15 15 C 1.37882 * 120.00077 * 66.14413 * 13 12 11 16 16 N 1.31510 * 119.99881 * 353.98897 * 15 13 12 17 17 Si 1.86798 * 119.99690 * 173.98405 * 15 13 12 18 18 H 1.48500 * 109.47217 * 60.00857 * 17 15 13 19 19 H 1.48506 * 109.46740 * 180.02562 * 17 15 13 20 20 H 1.48490 * 109.47461 * 300.00162 * 17 15 13 21 21 C 1.53779 * 113.61225 * 185.28681 * 12 11 9 22 22 C 1.53782 * 87.16989 * 89.16047 * 21 12 11 23 23 C 1.53778 * 87.08268 * 25.39145 * 22 21 12 24 24 C 1.38221 * 119.97197 * 0.27594 * 7 5 4 25 25 H 1.09009 * 109.46555 * 89.99957 * 1 2 3 26 26 H 1.08999 * 109.47117 * 209.99903 * 1 2 3 27 27 H 1.08998 * 109.47240 * 330.00388 * 1 2 3 28 28 H 1.08006 * 119.98030 * 359.97330 * 3 2 1 29 29 H 1.08003 * 120.01575 * 179.97438 * 4 3 2 30 30 H 1.08995 * 109.47608 * 160.00021 * 8 7 5 31 31 H 1.09007 * 109.47274 * 39.99830 * 8 7 5 32 32 H 0.96996 * 119.99805 * 185.02930 * 16 15 13 33 33 H 1.08999 * 113.61894 * 334.57045 * 21 12 11 34 34 H 1.09005 * 113.61461 * 203.74762 * 21 12 11 35 35 H 1.09005 * 113.61629 * 139.93903 * 22 21 12 36 36 H 1.08998 * 113.61617 * 270.75683 * 22 21 12 37 37 H 1.09002 * 113.61776 * 89.11449 * 23 22 21 38 38 H 1.09002 * 113.61353 * 219.93765 * 23 22 21 39 39 H 1.07996 * 119.98586 * 179.72675 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1978 0.0000 4 6 3.5795 1.1991 0.0005 5 6 4.2725 0.0001 0.0005 6 9 5.6235 0.0000 0.0005 7 6 3.5798 -1.1986 0.0005 8 6 4.3324 -2.5042 0.0011 9 6 4.7976 -2.8165 -1.3978 10 8 4.5436 -2.0570 -2.3027 11 8 5.4932 -3.9388 -1.6390 12 6 6.0113 -4.1172 -2.9837 13 6 6.8433 -2.9509 -3.4512 14 1 6.4988 -2.3350 -4.2688 15 6 8.0445 -2.6700 -2.8351 16 7 8.4085 -3.3438 -1.7660 17 14 9.1546 -1.3326 -3.5192 18 1 8.4326 -0.0350 -3.5057 19 1 10.3770 -1.2280 -2.6825 20 1 9.5372 -1.6717 -4.9133 21 6 6.6824 -5.4823 -3.2092 22 6 5.2971 -6.0103 -3.6178 23 6 4.9454 -4.5632 -4.0011 24 6 2.1976 -1.1974 -0.0052 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6571 2.1327 -0.0004 29 1 4.1190 2.1347 0.0001 30 1 3.6771 -3.3012 0.3525 31 1 5.1957 -2.4257 0.6620 32 1 9.2171 -3.0982 -1.2900 33 1 7.0701 -5.9344 -2.2963 34 1 7.4075 -5.4832 -4.0231 35 1 5.3231 -6.6930 -4.4672 36 1 4.7130 -6.3963 -2.7823 37 1 5.1953 -4.3115 -5.0318 38 1 3.9304 -4.2737 -3.7288 39 1 1.6571 -2.1323 -0.0097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835400626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:15 Heat of formation + Delta-G solvation = -107.093322 kcal Electronic energy + Delta-G solvation = -23892.140965 eV Core-core repulsion = 20293.162122 eV Total energy + Delta-G solvation = -3598.978843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.91610 -41.27407 -40.18092 -38.73951 -35.90488 -34.46592 -34.32168 -32.94724 -29.37841 -28.36503 -27.38859 -26.35198 -24.68225 -23.66324 -22.69037 -21.19355 -20.02756 -19.05650 -18.52717 -17.73169 -17.44464 -16.92753 -16.83764 -16.44341 -16.25537 -16.01155 -15.50781 -15.09281 -14.99580 -14.46903 -14.42137 -14.20628 -13.94650 -13.57951 -13.37794 -13.26462 -12.98559 -12.83902 -12.76307 -12.54605 -12.41259 -12.37039 -11.96291 -11.93579 -11.79472 -11.65496 -11.11996 -10.83315 -10.47101 -10.30876 -9.93211 -9.39916 -8.20061 -6.34495 0.13728 0.24458 1.29670 1.32135 1.39071 1.69390 2.24775 2.34825 2.70390 3.13288 3.37301 3.50390 3.74293 3.92742 3.95977 3.98097 4.16699 4.22600 4.29690 4.41352 4.43058 4.52336 4.64353 4.74702 4.86151 4.92120 4.97212 5.01959 5.04266 5.09039 5.20316 5.30945 5.33542 5.36045 5.50948 5.55834 5.63750 5.76572 5.93408 5.98307 6.45237 6.66376 7.30776 7.43648 8.82993 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.005924 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.354023 B = 4725.611976 C = 5815.397542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.097 4.097 3 C -0.089 4.089 4 C -0.159 4.159 5 C 0.069 3.931 6 F -0.161 7.161 7 C -0.113 4.113 8 C -0.073 4.073 9 C 0.459 3.541 10 O -0.533 6.533 11 O -0.352 6.352 12 C 0.208 3.792 13 C -0.533 4.533 14 H 0.041 0.959 15 C 0.036 3.964 16 N -0.887 5.887 17 Si 0.937 3.063 18 H -0.289 1.289 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.096 4.096 22 C -0.122 4.122 23 C -0.149 4.149 24 C -0.086 4.086 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.166 0.834 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.100 0.900 32 H 0.263 0.737 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.878 3.358 6.181 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.097 4.097 3 C -0.107 4.107 4 C -0.178 4.178 5 C 0.050 3.950 6 F -0.140 7.140 7 C -0.114 4.114 8 C -0.111 4.111 9 C 0.302 3.698 10 O -0.422 6.422 11 O -0.268 6.268 12 C 0.174 3.826 13 C -0.571 4.571 14 H 0.059 0.941 15 C -0.167 4.167 16 N -0.525 5.525 17 Si 0.762 3.238 18 H -0.215 1.215 19 H -0.200 1.200 20 H -0.185 1.185 21 C -0.134 4.134 22 C -0.159 4.159 23 C -0.187 4.187 24 C -0.104 4.104 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.184 0.816 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.707 3.455 5.968 16.243 hybrid contribution 1.703 0.987 -0.433 2.015 sum -13.004 4.441 5.534 14.815 Atomic orbital electron populations 1.20834 0.87777 1.04491 1.03303 1.20365 0.98395 0.92085 0.98846 1.21278 0.91945 0.99635 0.97829 1.21359 0.96310 0.96268 1.03860 1.18127 0.76339 0.95978 1.04552 1.91462 1.30897 1.97535 1.94092 1.19541 0.95418 0.92181 1.04231 1.20288 1.02053 0.96973 0.91740 1.23492 0.75241 0.79413 0.91608 1.90537 1.54808 1.48908 1.47997 1.86317 1.62831 1.40051 1.37611 1.20911 0.90789 0.94491 0.76451 1.21245 1.03026 1.14768 1.18027 0.94062 1.25616 0.98400 0.97583 0.95053 1.70066 1.24872 1.39964 1.17572 0.85952 0.78589 0.79723 0.79507 1.21529 1.19982 1.18490 1.22681 0.96239 0.94620 0.99853 1.22836 0.96431 0.95334 1.01342 1.23397 0.98038 0.97372 0.99844 1.21100 0.90919 1.00123 0.98247 0.90496 0.90105 0.89447 0.81619 0.83696 0.83842 0.88159 0.92775 0.93151 0.90655 0.89558 0.89944 0.90325 0.93475 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.10 -2.10 5.88 -19.86 -0.12 -2.22 16 3 C -0.09 -1.98 9.70 22.26 0.22 -1.76 16 4 C -0.16 -4.63 10.03 22.31 0.22 -4.41 16 5 C 0.07 2.58 7.13 22.38 0.16 2.74 16 6 F -0.16 -7.22 16.66 44.97 0.75 -6.47 16 7 C -0.11 -3.88 4.43 -19.82 -0.09 -3.97 16 8 C -0.07 -2.70 5.67 29.10 0.16 -2.53 16 9 C 0.46 22.29 7.50 71.24 0.53 22.83 16 10 O -0.53 -29.01 14.35 21.94 0.31 -28.70 16 11 O -0.35 -18.21 9.91 -51.42 -0.51 -18.72 16 12 C 0.21 10.84 0.35 -10.95 0.00 10.84 16 13 C -0.53 -31.29 6.82 25.60 0.17 -31.12 16 14 H 0.04 2.54 7.82 -2.91 -0.02 2.52 16 15 C 0.04 2.12 5.36 84.66 0.45 2.57 16 16 N -0.89 -52.27 12.80 21.45 0.27 -51.99 16 17 Si 0.94 46.62 29.54 68.60 2.03 48.65 16 18 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 19 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 21 C -0.10 -4.45 7.01 31.12 0.22 -4.23 16 22 C -0.12 -4.58 8.03 31.12 0.25 -4.33 16 23 C -0.15 -6.61 7.09 31.18 0.22 -6.39 16 24 C -0.09 -2.27 9.32 22.26 0.21 -2.06 16 25 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 27 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 28 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 30 H 0.14 3.99 8.01 -2.39 -0.02 3.97 16 31 H 0.10 3.83 7.95 -2.38 -0.02 3.81 16 32 H 0.26 14.84 8.32 -92.71 -0.77 14.07 16 33 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.07 3.51 8.09 -2.38 -0.02 3.49 16 35 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.08 3.44 8.09 -2.39 -0.02 3.42 16 38 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 39 H 0.15 3.17 8.04 -2.91 -0.02 3.15 16 Total: -1.00 -74.41 338.16 7.23 -67.18 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.04 Total: 14.82 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.33 Total: -24.77 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.27 Total: -51.99 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -0.19 Total: -47.42 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.75 Total: -6.47 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -74.41 7.23 -67.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835400626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.912 kcal (2) G-P(sol) polarization free energy of solvation -74.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds