Wall clock time and date at job start Tue Mar 31 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.46301 * 114.00222 * 2 1 4 4 C 1.46902 * 110.99735 * 243.95104 * 3 2 1 5 5 C 1.46899 * 111.00336 * 119.99706 * 3 2 1 6 6 C 1.52993 * 109.47205 * 185.00016 * 5 3 2 7 7 N 1.46498 * 109.47472 * 179.97438 * 6 5 3 8 8 S 1.65601 * 120.00315 * 165.27589 * 7 6 5 9 9 O 1.42102 * 104.27710 * 180.79984 * 8 7 6 10 10 O 1.42101 * 104.27317 * 308.65327 * 8 7 6 11 11 C 1.81389 * 104.44936 * 64.72563 * 8 7 6 12 12 C 1.53007 * 109.47309 * 173.81201 * 11 8 7 13 13 C 1.50700 * 115.54854 * 65.19124 * 12 11 8 14 14 H 1.07999 * 120.00034 * 264.78379 * 13 12 11 15 15 C 1.37876 * 119.99863 * 84.78912 * 13 12 11 16 16 N 1.31516 * 120.00071 * 352.22587 * 15 13 12 17 17 Si 1.86803 * 119.99795 * 172.22501 * 15 13 12 18 18 H 1.48495 * 109.47397 * 60.00211 * 17 15 13 19 19 H 1.48501 * 109.46768 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47267 * 299.99664 * 17 15 13 21 21 C 1.53002 * 117.49610 * 279.52810 * 12 11 8 22 22 C 1.52995 * 117.49864 * 210.86683 * 12 11 8 23 23 H 1.08995 * 109.47361 * 300.00671 * 1 2 3 24 24 H 1.09001 * 109.46781 * 60.00257 * 1 2 3 25 25 H 1.09003 * 109.47106 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47179 * 296.04166 * 4 3 2 27 27 H 1.09001 * 109.47179 * 56.04566 * 4 3 2 28 28 H 1.09005 * 109.46794 * 176.04071 * 4 3 2 29 29 H 1.09004 * 109.46870 * 64.99817 * 5 3 2 30 30 H 1.08999 * 109.46797 * 305.00316 * 5 3 2 31 31 H 1.08997 * 109.47469 * 59.99727 * 6 5 3 32 32 H 1.08999 * 109.47488 * 299.99877 * 6 5 3 33 33 H 0.97001 * 119.99696 * 345.00454 * 7 6 5 34 34 H 1.09006 * 109.47337 * 293.80721 * 11 8 7 35 35 H 1.09002 * 109.47632 * 53.81361 * 11 8 7 36 36 H 0.97003 * 120.00122 * 185.02862 * 16 15 13 37 37 H 1.08996 * 117.49740 * 359.97438 * 21 12 11 38 38 H 1.09000 * 117.49983 * 145.01990 * 21 12 11 39 39 H 1.09000 * 117.49768 * 214.97541 * 22 12 11 40 40 H 1.09001 * 117.49907 * 359.97251 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.7884 1.5724 -1.2322 5 6 2.8646 1.5386 1.1877 6 6 3.3674 2.9833 1.2168 7 7 4.2051 3.1850 2.4016 8 16 5.1759 4.5222 2.5114 9 8 5.8388 4.3724 3.7594 10 8 5.9040 4.5276 1.2911 11 6 4.0189 5.9180 2.5686 12 6 4.7933 7.2122 2.8263 13 6 5.7451 7.6285 1.7346 14 1 6.7888 7.3577 1.7960 15 6 5.2835 8.3550 0.6576 16 7 3.9927 8.5540 0.5033 17 14 6.4916 9.0567 -0.5824 18 1 7.2648 7.9502 -1.2011 19 1 5.7476 9.7915 -1.6369 20 1 7.4225 9.9871 0.1053 21 6 5.1968 7.5183 4.2701 22 6 4.0782 8.3210 3.6010 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.6287 0.8797 -1.2767 27 1 2.1423 1.4160 -2.0960 28 1 3.1611 2.5967 -1.2380 29 1 3.7155 0.8584 1.1506 30 1 2.2791 1.3394 2.0852 31 1 2.5165 3.6635 1.2539 32 1 3.9529 3.1824 0.3193 33 1 4.1882 2.5374 3.1235 34 1 3.4926 5.9930 1.6169 35 1 3.2982 5.7600 3.3709 36 1 3.6625 9.0016 -0.2914 37 1 4.9103 6.7980 5.0362 38 1 6.1505 8.0212 4.4303 39 1 4.2965 9.3516 3.3212 40 1 3.0559 8.1287 3.9266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849409295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:23 Heat of formation + Delta-G solvation = -41.931711 kcal Electronic energy + Delta-G solvation = -22247.264531 eV Core-core repulsion = 18806.475221 eV Total energy + Delta-G solvation = -3440.789310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -37.90230 -36.76542 -36.30695 -35.75351 -35.08760 -33.29073 -32.05174 -28.40107 -28.17148 -26.79538 -25.46315 -24.65502 -21.49152 -21.22121 -19.73634 -18.73534 -17.31439 -16.98216 -16.43406 -16.00736 -15.51526 -15.43997 -15.14260 -14.73751 -14.56144 -14.27687 -13.84512 -13.66029 -13.29602 -13.12359 -12.52548 -12.35436 -11.94500 -11.87520 -11.84608 -11.53439 -11.29566 -11.16615 -11.10337 -11.03475 -10.91419 -10.60970 -10.46829 -10.20752 -10.13187 -9.74403 -9.26648 -8.97271 -8.95867 -8.57079 -8.10520 -6.14788 -4.25518 1.02246 2.34472 3.32093 3.34066 3.40702 3.45947 4.36623 4.46461 4.55172 4.83974 4.95232 5.03490 5.13784 5.20339 5.26319 5.29911 5.31181 5.37649 5.38916 5.47774 5.56327 5.71145 5.77003 5.84938 5.95765 6.06532 6.25092 6.36119 6.46452 6.60134 6.71521 6.77673 6.97593 7.17648 7.25162 7.38422 7.79535 8.19447 8.79837 9.45723 10.92827 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017260 B = 0.004651 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.860596 B = 6018.209094 C = 6700.251590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.267 6.267 3 N -0.364 5.364 4 C 0.000 4.000 5 C 0.036 3.964 6 C 0.121 3.879 7 N -1.133 6.133 8 S 2.608 3.392 9 O -0.973 6.973 10 O -0.949 6.949 11 C -0.553 4.553 12 C 0.043 3.957 13 C -0.517 4.517 14 H 0.068 0.932 15 C 0.083 3.917 16 N -0.875 5.875 17 Si 0.890 3.110 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.208 4.208 22 C -0.141 4.141 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.410 0.590 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.264 0.736 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 -12.659 0.139 14.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 N -0.133 5.133 4 C -0.149 4.149 5 C -0.094 4.094 6 C -0.006 4.006 7 N -0.890 5.890 8 S 2.705 3.295 9 O -0.963 6.963 10 O -0.939 6.939 11 C -0.686 4.686 12 C 0.041 3.959 13 C -0.554 4.554 14 H 0.086 0.914 15 C -0.122 4.122 16 N -0.510 5.510 17 Si 0.717 3.283 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.246 4.246 22 C -0.180 4.180 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.242 0.758 34 H 0.152 0.848 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.954 -12.313 -0.106 14.141 hybrid contribution 0.180 -0.118 -0.482 0.528 sum -6.774 -12.431 -0.588 14.169 Atomic orbital electron populations 1.22611 0.80653 1.01519 1.00780 1.90680 1.20871 1.18652 1.96928 1.67543 1.34286 1.08193 1.03328 1.22886 0.97438 1.02618 0.91911 1.22543 0.96470 0.96570 0.93768 1.21168 0.94992 0.95732 0.88753 1.55975 1.63040 1.42250 1.27697 1.05145 0.75509 0.74636 0.74176 1.93510 1.72159 1.85560 1.45074 1.93534 1.68441 1.85587 1.46348 1.29974 1.13757 1.14986 1.09918 1.18277 0.97376 0.90219 0.90073 1.20489 0.94314 1.35750 1.04878 0.91391 1.24942 0.95197 0.94622 0.97449 1.69967 1.12385 1.41303 1.27340 0.86660 0.81375 0.79565 0.80687 1.19465 1.21115 1.19895 1.23202 0.99945 1.04688 0.96725 1.22555 0.94033 0.97723 1.03710 0.93589 0.93683 0.89558 0.93917 0.90409 0.88348 0.92775 0.89299 0.90536 0.89756 0.75806 0.84775 0.88146 0.92651 0.90662 0.89521 0.89583 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.51 101.05 1.16 1.53 16 2 O -0.27 -3.20 10.96 -13.92 -0.15 -3.35 16 3 N -0.36 -4.32 5.14 -121.13 -0.62 -4.94 16 4 C 0.00 0.00 9.77 60.07 0.59 0.58 16 5 C 0.04 0.41 5.66 -3.83 -0.02 0.39 16 6 C 0.12 1.58 5.92 -4.05 -0.02 1.55 16 7 N -1.13 -16.22 5.89 -10.62 -0.06 -16.28 16 8 S 2.61 51.29 5.19 -107.50 -0.56 50.73 16 9 O -0.97 -20.96 18.08 -57.54 -1.04 -22.00 16 10 O -0.95 -22.10 17.18 -57.54 -0.99 -23.09 16 11 C -0.55 -11.29 5.92 37.16 0.22 -11.07 16 12 C 0.04 1.03 1.32 -155.66 -0.21 0.82 16 13 C -0.52 -13.97 8.18 -34.44 -0.28 -14.25 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C 0.08 2.23 5.38 -17.82 -0.10 2.14 16 16 N -0.87 -23.66 12.98 55.43 0.72 -22.94 16 17 Si 0.89 21.09 29.55 -169.99 -5.02 16.06 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.21 -4.53 9.96 -26.69 -0.27 -4.79 16 22 C -0.14 -3.17 9.49 -26.69 -0.25 -3.43 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 1.04 6.33 -51.93 -0.33 0.71 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.17 5.99 -51.93 -0.31 0.86 16 33 H 0.41 4.84 8.62 -34.47 -0.30 4.54 16 34 H 0.13 2.82 8.14 -51.92 -0.42 2.40 16 35 H 0.10 1.72 8.09 -51.92 -0.42 1.30 16 36 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -32.80 350.41 -8.02 -40.82 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.40 Total: 6.22 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 0.82 Total: -26.51 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.03 Total: -44.16 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -2.18 Total: -48.44 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 51.29 SS G_CDS: -0.56 Total: 50.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.80 -8.02 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849409295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.113 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds