Wall clock time and date at job start Tue Mar 31 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.46301 * 114.00222 * 2 1 4 4 C 1.46902 * 110.99735 * 243.95104 * 3 2 1 5 5 C 1.46899 * 111.00336 * 119.99706 * 3 2 1 6 6 C 1.52993 * 109.47205 * 185.00016 * 5 3 2 7 7 N 1.46498 * 109.47472 * 179.97438 * 6 5 3 8 8 S 1.65601 * 120.00315 * 165.27589 * 7 6 5 9 9 O 1.42102 * 104.27710 * 180.79984 * 8 7 6 10 10 O 1.42101 * 104.27317 * 308.65327 * 8 7 6 11 11 C 1.81389 * 104.44936 * 64.72563 * 8 7 6 12 12 C 1.53007 * 109.47309 * 173.81201 * 11 8 7 13 13 C 1.50700 * 115.54854 * 65.19124 * 12 11 8 14 14 H 1.07999 * 120.00034 * 264.78379 * 13 12 11 15 15 C 1.37876 * 119.99863 * 84.78912 * 13 12 11 16 16 N 1.31516 * 120.00071 * 352.22587 * 15 13 12 17 17 Si 1.86803 * 119.99795 * 172.22501 * 15 13 12 18 18 H 1.48495 * 109.47397 * 60.00211 * 17 15 13 19 19 H 1.48501 * 109.46768 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47267 * 299.99664 * 17 15 13 21 21 C 1.53002 * 117.49610 * 279.52810 * 12 11 8 22 22 C 1.52995 * 117.49864 * 210.86683 * 12 11 8 23 23 H 1.08995 * 109.47361 * 300.00671 * 1 2 3 24 24 H 1.09001 * 109.46781 * 60.00257 * 1 2 3 25 25 H 1.09003 * 109.47106 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47179 * 296.04166 * 4 3 2 27 27 H 1.09001 * 109.47179 * 56.04566 * 4 3 2 28 28 H 1.09005 * 109.46794 * 176.04071 * 4 3 2 29 29 H 1.09004 * 109.46870 * 64.99817 * 5 3 2 30 30 H 1.08999 * 109.46797 * 305.00316 * 5 3 2 31 31 H 1.08997 * 109.47469 * 59.99727 * 6 5 3 32 32 H 1.08999 * 109.47488 * 299.99877 * 6 5 3 33 33 H 0.97001 * 119.99696 * 345.00454 * 7 6 5 34 34 H 1.09006 * 109.47337 * 293.80721 * 11 8 7 35 35 H 1.09002 * 109.47632 * 53.81361 * 11 8 7 36 36 H 0.97003 * 120.00122 * 185.02862 * 16 15 13 37 37 H 1.08996 * 117.49740 * 359.97438 * 21 12 11 38 38 H 1.09000 * 117.49983 * 145.01990 * 21 12 11 39 39 H 1.09000 * 117.49768 * 214.97541 * 22 12 11 40 40 H 1.09001 * 117.49907 * 359.97251 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.7884 1.5724 -1.2322 5 6 2.8646 1.5386 1.1877 6 6 3.3674 2.9833 1.2168 7 7 4.2051 3.1850 2.4016 8 16 5.1759 4.5222 2.5114 9 8 5.8388 4.3724 3.7594 10 8 5.9040 4.5276 1.2911 11 6 4.0189 5.9180 2.5686 12 6 4.7933 7.2122 2.8263 13 6 5.7451 7.6285 1.7346 14 1 6.7888 7.3577 1.7960 15 6 5.2835 8.3550 0.6576 16 7 3.9927 8.5540 0.5033 17 14 6.4916 9.0567 -0.5824 18 1 7.2648 7.9502 -1.2011 19 1 5.7476 9.7915 -1.6369 20 1 7.4225 9.9871 0.1053 21 6 5.1968 7.5183 4.2701 22 6 4.0782 8.3210 3.6010 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.6287 0.8797 -1.2767 27 1 2.1423 1.4160 -2.0960 28 1 3.1611 2.5967 -1.2380 29 1 3.7155 0.8584 1.1506 30 1 2.2791 1.3394 2.0852 31 1 2.5165 3.6635 1.2539 32 1 3.9529 3.1824 0.3193 33 1 4.1882 2.5374 3.1235 34 1 3.4926 5.9930 1.6169 35 1 3.2982 5.7600 3.3709 36 1 3.6625 9.0016 -0.2914 37 1 4.9103 6.7980 5.0362 38 1 6.1505 8.0212 4.4303 39 1 4.2965 9.3516 3.3212 40 1 3.0559 8.1287 3.9266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849409295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:23 Heat of formation + Delta-G solvation = -66.945273 kcal Electronic energy + Delta-G solvation = -22248.349201 eV Core-core repulsion = 18806.475221 eV Total energy + Delta-G solvation = -3441.873980 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.81409 -38.54318 -37.94162 -36.88588 -36.67200 -34.27920 -34.06303 -29.84007 -29.36791 -27.54390 -27.46126 -25.59179 -22.97100 -22.45275 -21.48730 -20.28148 -18.55975 -18.34107 -18.09030 -17.08168 -16.87766 -16.67348 -16.54206 -16.32468 -15.83239 -15.55151 -15.39421 -14.88258 -14.54538 -14.19956 -13.73841 -13.65899 -13.41903 -13.31294 -13.11669 -12.92298 -12.90687 -12.83892 -12.82156 -12.58343 -12.42299 -12.21598 -12.07612 -11.87911 -11.53144 -11.00576 -10.85966 -10.55151 -10.50519 -9.86216 -9.83594 -8.17285 -6.31831 -0.53015 1.41507 1.42615 1.45697 1.49993 2.10895 2.41561 2.94310 3.09905 3.40191 3.46500 3.59616 3.96545 3.99675 4.05429 4.31347 4.36907 4.44054 4.47881 4.55495 4.61458 4.64347 4.66363 4.72907 4.82095 4.86868 4.90842 4.94238 5.00189 5.02506 5.23822 5.49170 5.57745 5.61094 5.73813 5.97332 6.13429 6.24846 6.74044 7.40455 8.89530 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017260 B = 0.004651 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.860596 B = 6018.209094 C = 6700.251590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.283 6.283 3 N -0.371 5.371 4 C -0.003 4.003 5 C 0.042 3.958 6 C 0.116 3.884 7 N -1.113 6.113 8 S 2.627 3.373 9 O -0.993 6.993 10 O -0.992 6.992 11 C -0.551 4.551 12 C 0.010 3.990 13 C -0.536 4.536 14 H 0.048 0.952 15 C 0.046 3.954 16 N -0.891 5.891 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.274 1.274 20 H -0.270 1.270 21 C -0.197 4.197 22 C -0.139 4.139 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.108 0.892 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.424 0.576 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.266 0.734 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 -13.580 0.608 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.288 6.288 3 N -0.140 5.140 4 C -0.152 4.152 5 C -0.088 4.088 6 C -0.011 4.011 7 N -0.875 5.875 8 S 2.724 3.276 9 O -0.983 6.983 10 O -0.982 6.982 11 C -0.684 4.684 12 C 0.008 3.992 13 C -0.574 4.574 14 H 0.066 0.934 15 C -0.158 4.158 16 N -0.527 5.527 17 Si 0.758 3.242 18 H -0.202 1.202 19 H -0.199 1.199 20 H -0.195 1.195 21 C -0.234 4.234 22 C -0.178 4.178 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.126 0.874 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.260 0.740 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.228 -13.232 0.377 15.586 hybrid contribution 0.532 0.112 -0.614 0.820 sum -7.696 -13.119 -0.237 15.212 Atomic orbital electron populations 1.22816 0.79102 1.03073 1.01025 1.90662 1.22592 1.18496 1.97015 1.67547 1.34399 1.08568 1.03516 1.22934 0.97597 1.02467 0.92166 1.22462 0.96683 0.95142 0.94513 1.21305 0.94889 0.97355 0.87536 1.55387 1.62517 1.40885 1.28725 1.04279 0.75413 0.75046 0.72853 1.93472 1.73184 1.86053 1.45624 1.93484 1.70141 1.86434 1.48095 1.29867 1.14074 1.13634 1.10851 1.18416 0.98255 0.92193 0.90324 1.20678 0.94198 1.36193 1.06305 0.93350 1.25478 0.96512 0.94970 0.98805 1.70007 1.13056 1.41784 1.27807 0.85998 0.79976 0.78868 0.79331 1.20205 1.19869 1.19499 1.23253 0.99558 1.04539 0.96098 1.22516 0.95379 0.96371 1.03503 0.93296 0.93453 0.87359 0.94149 0.89370 0.88503 0.92983 0.87758 0.89298 0.90906 0.73963 0.85583 0.84582 0.92488 0.88196 0.90039 0.91633 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 11.51 113.37 1.30 1.87 16 2 O -0.28 -6.27 10.96 -50.16 -0.55 -6.81 16 3 N -0.37 -8.20 5.14 -537.15 -2.76 -10.97 16 4 C 0.00 -0.07 9.77 127.69 1.25 1.18 16 5 C 0.04 0.88 5.66 86.30 0.49 1.37 16 6 C 0.12 2.84 5.92 86.38 0.51 3.36 16 7 N -1.11 -29.89 5.89 -187.51 -1.10 -30.99 16 8 S 2.63 100.97 5.19 -56.49 -0.29 100.68 16 9 O -0.99 -41.60 18.08 -127.65 -2.31 -43.90 16 10 O -0.99 -46.54 17.18 -127.65 -2.19 -48.74 16 11 C -0.55 -21.69 5.92 71.98 0.43 -21.26 16 12 C 0.01 0.49 1.32 -52.93 -0.07 0.42 16 13 C -0.54 -29.24 8.18 25.60 0.21 -29.03 16 14 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 15 C 0.05 2.45 5.38 84.65 0.46 2.91 16 16 N -0.89 -48.03 12.98 21.45 0.28 -47.75 16 17 Si 0.93 43.33 29.55 68.60 2.03 45.36 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 C -0.20 -8.30 9.96 30.62 0.30 -7.99 16 22 C -0.14 -6.07 9.49 30.62 0.29 -5.78 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.10 2.01 6.33 -2.38 -0.02 1.99 16 29 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 1.99 5.99 -2.39 -0.01 1.97 16 33 H 0.42 9.01 8.62 -96.74 -0.83 8.18 16 34 H 0.13 5.18 8.14 -2.39 -0.02 5.16 16 35 H 0.14 4.25 8.09 -2.39 -0.02 4.23 16 36 H 0.27 13.66 8.32 -92.71 -0.77 12.89 16 37 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 38 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -69.26 350.41 -1.54 -70.80 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.19 Total: 25.29 kcal Atomic # 6 Polarization: -58.15 SS G_CDS: 5.17 Total: -52.98 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -3.59 Total: -89.70 kcal Atomic # 8 Polarization: -94.40 SS G_CDS: -5.05 Total: -99.46 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 100.97 SS G_CDS: -0.29 Total: 100.68 kcal Total: -69.26 -1.54 -70.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849409295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.859 kcal (2) G-P(sol) polarization free energy of solvation -69.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds