Wall clock time and date at job start Tue Mar 31 2020 07:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00278 * 2 1 4 4 H 1.48494 * 109.47403 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46974 * 300.00249 * 3 2 1 6 6 H 1.48497 * 109.46997 * 59.99913 * 3 2 1 7 7 C 1.37881 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99911 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00378 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47541 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00207 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00139 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99866 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46927 * 180.02562 * 13 11 10 15 15 C 1.47470 * 110.99995 * 285.97055 * 14 13 11 16 16 C 1.53509 * 87.93384 * 221.29841 * 15 14 13 17 17 C 1.47475 * 110.99688 * 189.99829 * 14 13 11 18 18 H 1.08997 * 113.47961 * 23.87780 * 17 14 13 19 19 C 1.50708 * 113.47636 * 253.46838 * 17 14 13 20 20 C 1.38242 * 119.97061 * 140.00467 * 19 17 14 21 21 C 1.38205 * 120.02001 * 180.02562 * 20 19 17 22 22 C 1.38455 * 119.97502 * 0.02562 * 21 20 19 23 23 F 1.35106 * 120.02241 * 179.97438 * 22 21 20 24 24 C 1.38458 * 119.95220 * 359.97438 * 22 21 20 25 25 C 1.38198 * 119.97324 * 0.02562 * 24 22 21 26 26 H 0.96998 * 120.00042 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46984 * 60.00000 * 9 7 2 28 28 H 1.09004 * 109.46909 * 300.00233 * 9 7 2 29 29 H 0.97006 * 119.99874 * 0.02562 * 10 9 7 30 30 H 1.08999 * 109.47305 * 60.00146 * 13 11 10 31 31 H 1.09004 * 109.47226 * 299.99987 * 13 11 10 32 32 H 1.08998 * 113.47972 * 336.06516 * 15 14 13 33 33 H 1.09008 * 113.48066 * 106.53109 * 15 14 13 34 34 H 1.09007 * 114.16512 * 272.37829 * 16 15 14 35 35 H 1.09001 * 114.17396 * 139.67424 * 16 15 14 36 36 H 1.07994 * 119.98958 * 0.27574 * 20 19 17 37 37 H 1.08007 * 120.00924 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.01541 * 179.97438 * 24 22 21 39 39 H 1.08000 * 119.98611 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 1.7537 -4.8834 0.0029 12 8 0.5613 -5.1051 0.0039 13 6 2.7330 -6.0289 0.0032 14 7 1.9985 -7.3011 0.0043 15 6 1.4067 -7.5686 1.3282 16 6 1.8322 -9.0339 1.1608 17 6 2.9086 -8.4365 0.2437 18 1 3.8220 -8.1577 0.7690 19 6 3.1741 -9.2632 -0.9882 20 6 4.4457 -9.7463 -1.2348 21 6 4.6904 -10.5041 -2.3644 22 6 3.6616 -10.7789 -3.2493 23 9 3.8999 -11.5191 -4.3541 24 6 2.3885 -10.2945 -3.0012 25 6 2.1461 -9.5369 -1.8710 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 3.1567 -3.4355 0.0010 30 1 3.3603 -5.9704 0.8927 31 1 3.3591 -5.9719 -0.8873 32 1 1.9188 -7.0582 2.1440 33 1 0.3257 -7.4308 1.3566 34 1 1.1003 -9.6549 0.6443 35 1 2.2237 -9.4917 2.0693 36 1 5.2471 -9.5349 -0.5426 37 1 5.6840 -10.8811 -2.5572 38 1 1.5853 -10.5078 -3.6910 39 1 1.1530 -9.1594 -1.6771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852468244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:35 Heat of formation + Delta-G solvation = -21.646915 kcal Electronic energy + Delta-G solvation = -22193.806238 eV Core-core repulsion = 18630.825381 eV Total energy + Delta-G solvation = -3562.980857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.06160 -40.85042 -38.86783 -37.99363 -34.16114 -32.36935 -31.59530 -31.33300 -30.44354 -27.44870 -25.64828 -24.90590 -23.28991 -22.36019 -21.97365 -19.75417 -19.67331 -17.90571 -17.27624 -16.66847 -16.41835 -15.84646 -15.77800 -15.64990 -15.05299 -14.87516 -14.58831 -14.13885 -13.76806 -13.71578 -13.54701 -13.27444 -12.85567 -12.69760 -12.36701 -12.04774 -11.89311 -11.74918 -11.47522 -11.22180 -11.08218 -10.94784 -10.91265 -10.64080 -10.33056 -9.39595 -9.28712 -9.16171 -8.89164 -8.75104 -8.65167 -7.88311 -6.18259 -4.25184 0.91210 1.06242 3.22083 3.28566 3.30035 3.32354 3.36873 3.76187 4.07518 4.17123 4.30952 4.43062 4.53122 4.61336 4.69980 4.77661 5.09261 5.13498 5.15573 5.17964 5.22499 5.29881 5.42294 5.55964 5.60221 5.72052 5.78839 5.85773 5.92496 5.99327 6.11084 6.21268 6.40231 6.70540 6.92499 7.30342 7.43430 7.50743 7.65835 7.95674 8.61848 8.77469 9.10479 9.41697 10.92010 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.002775 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.545877 B =10086.083980 C =10588.458494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.500 3.500 12 O -0.539 6.539 13 C -0.002 4.002 14 N -0.439 5.439 15 C 0.006 3.994 16 C -0.136 4.136 17 C 0.061 3.939 18 H 0.087 0.913 19 C -0.078 4.078 20 C -0.086 4.086 21 C -0.158 4.158 22 C 0.093 3.907 23 F -0.144 7.144 24 C -0.157 4.157 25 C -0.058 4.058 26 H 0.265 0.735 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.389 0.611 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.698 -21.638 0.072 23.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.364 5.364 11 C 0.284 3.716 12 O -0.417 6.417 13 C -0.133 4.133 14 N -0.161 5.161 15 C -0.122 4.122 16 C -0.174 4.174 17 C -0.048 4.048 18 H 0.105 0.895 19 C -0.079 4.079 20 C -0.104 4.104 21 C -0.177 4.177 22 C 0.074 3.926 23 F -0.122 7.122 24 C -0.175 4.175 25 C -0.076 4.076 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.221 0.779 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.246 -21.585 -0.577 23.113 hybrid contribution 1.614 1.151 0.360 2.015 sum 9.860 -20.434 -0.217 22.689 Atomic orbital electron populations 1.69984 1.06111 1.27203 1.48960 1.24960 0.94918 0.99476 0.94708 0.86361 0.79817 0.82965 0.77770 1.19641 1.20774 1.20792 1.21264 0.93276 0.90469 1.53113 0.91889 1.19082 0.88272 0.81913 0.97673 1.46458 1.11058 1.06108 1.72826 1.20181 0.89436 0.84024 0.78006 1.90661 1.16515 1.84663 1.49830 1.22657 0.96446 0.91257 1.02988 1.68861 1.18362 0.99855 1.29062 1.23683 1.03174 0.94417 0.90945 1.23290 0.97855 0.97058 0.99212 1.22400 0.96663 0.92711 0.93041 0.89520 1.19656 0.93206 0.98559 0.96455 1.20894 0.96494 0.96651 0.96395 1.21060 0.98912 1.02219 0.95519 1.17772 0.94677 0.95298 0.84868 1.91491 1.95179 1.74570 1.50996 1.21210 0.95688 1.00842 0.99807 1.20975 1.00338 0.94366 0.91935 0.92487 0.95570 0.95633 0.77852 0.91641 0.88212 0.91367 0.88637 0.88615 0.90343 0.85206 0.84945 0.84775 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.69 9.28 -34.44 -0.32 -15.01 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.25 6.65 5.43 -5.20 -0.03 6.62 16 10 N -0.72 -14.89 5.55 -61.47 -0.34 -15.23 16 11 C 0.50 9.81 7.67 -10.98 -0.08 9.73 16 12 O -0.54 -12.81 15.76 5.56 0.09 -12.73 16 13 C 0.00 -0.02 5.31 -4.97 -0.03 -0.05 16 14 N -0.44 -5.81 5.35 -239.40 -1.28 -7.09 16 15 C 0.01 0.08 6.71 -7.56 -0.05 0.03 16 16 C -0.14 -1.23 7.91 -26.20 -0.21 -1.43 16 17 C 0.06 0.60 3.28 -72.59 -0.24 0.36 16 18 H 0.09 0.71 7.71 -51.93 -0.40 0.31 16 19 C -0.08 -0.77 5.38 -104.61 -0.56 -1.34 16 20 C -0.09 -0.74 9.70 -39.59 -0.38 -1.12 16 21 C -0.16 -1.44 10.03 -39.51 -0.40 -1.83 16 22 C 0.09 0.98 7.30 -39.42 -0.29 0.69 16 23 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 24 C -0.16 -1.60 10.03 -39.51 -0.40 -2.00 16 25 C -0.06 -0.61 8.87 -39.59 -0.35 -0.96 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 30 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 31 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.07 0.78 7.70 -51.93 -0.40 0.38 16 33 H 0.10 1.34 8.13 -51.92 -0.42 0.91 16 34 H 0.10 0.86 7.65 -51.93 -0.40 0.46 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.13 0.82 8.05 -52.49 -0.42 0.40 16 37 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.14 1.55 7.82 -52.49 -0.41 1.14 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -32.53 337.95 -9.37 -41.90 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.26 Total: 3.88 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -3.43 Total: -4.68 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.88 Total: -47.67 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.53 -9.37 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852468244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.257 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds