Wall clock time and date at job start Tue Mar 31 2020 07:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00278 * 2 1 4 4 H 1.48494 * 109.47403 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46974 * 300.00249 * 3 2 1 6 6 H 1.48497 * 109.46997 * 59.99913 * 3 2 1 7 7 C 1.37881 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99911 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00378 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47541 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00207 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00139 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99866 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46927 * 180.02562 * 13 11 10 15 15 C 1.47470 * 110.99995 * 285.97055 * 14 13 11 16 16 C 1.53509 * 87.93384 * 221.29841 * 15 14 13 17 17 C 1.47475 * 110.99688 * 189.99829 * 14 13 11 18 18 H 1.08997 * 113.47961 * 23.87780 * 17 14 13 19 19 C 1.50708 * 113.47636 * 253.46838 * 17 14 13 20 20 C 1.38242 * 119.97061 * 140.00467 * 19 17 14 21 21 C 1.38205 * 120.02001 * 180.02562 * 20 19 17 22 22 C 1.38455 * 119.97502 * 0.02562 * 21 20 19 23 23 F 1.35106 * 120.02241 * 179.97438 * 22 21 20 24 24 C 1.38458 * 119.95220 * 359.97438 * 22 21 20 25 25 C 1.38198 * 119.97324 * 0.02562 * 24 22 21 26 26 H 0.96998 * 120.00042 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46984 * 60.00000 * 9 7 2 28 28 H 1.09004 * 109.46909 * 300.00233 * 9 7 2 29 29 H 0.97006 * 119.99874 * 0.02562 * 10 9 7 30 30 H 1.08999 * 109.47305 * 60.00146 * 13 11 10 31 31 H 1.09004 * 109.47226 * 299.99987 * 13 11 10 32 32 H 1.08998 * 113.47972 * 336.06516 * 15 14 13 33 33 H 1.09008 * 113.48066 * 106.53109 * 15 14 13 34 34 H 1.09007 * 114.16512 * 272.37829 * 16 15 14 35 35 H 1.09001 * 114.17396 * 139.67424 * 16 15 14 36 36 H 1.07994 * 119.98958 * 0.27574 * 20 19 17 37 37 H 1.08007 * 120.00924 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.01541 * 179.97438 * 24 22 21 39 39 H 1.08000 * 119.98611 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 1.7537 -4.8834 0.0029 12 8 0.5613 -5.1051 0.0039 13 6 2.7330 -6.0289 0.0032 14 7 1.9985 -7.3011 0.0043 15 6 1.4067 -7.5686 1.3282 16 6 1.8322 -9.0339 1.1608 17 6 2.9086 -8.4365 0.2437 18 1 3.8220 -8.1577 0.7690 19 6 3.1741 -9.2632 -0.9882 20 6 4.4457 -9.7463 -1.2348 21 6 4.6904 -10.5041 -2.3644 22 6 3.6616 -10.7789 -3.2493 23 9 3.8999 -11.5191 -4.3541 24 6 2.3885 -10.2945 -3.0012 25 6 2.1461 -9.5369 -1.8710 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 3.1567 -3.4355 0.0010 30 1 3.3603 -5.9704 0.8927 31 1 3.3591 -5.9719 -0.8873 32 1 1.9188 -7.0582 2.1440 33 1 0.3257 -7.4308 1.3566 34 1 1.1003 -9.6549 0.6443 35 1 2.2237 -9.4917 2.0693 36 1 5.2471 -9.5349 -0.5426 37 1 5.6840 -10.8811 -2.5572 38 1 1.5853 -10.5078 -3.6910 39 1 1.1530 -9.1594 -1.6771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852468244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:34 Heat of formation + Delta-G solvation = -44.657891 kcal Electronic energy + Delta-G solvation = -22194.804069 eV Core-core repulsion = 18630.825381 eV Total energy + Delta-G solvation = -3563.978688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.87159 -41.77770 -40.16492 -39.06968 -36.10505 -34.35444 -32.57635 -32.05309 -31.39382 -29.33273 -26.53498 -26.18796 -24.23316 -23.99126 -22.78648 -21.37883 -20.52235 -19.02299 -18.63253 -17.66778 -17.60370 -17.19092 -16.93867 -16.57411 -16.50912 -16.39362 -15.66167 -15.41164 -15.15426 -14.54375 -14.39098 -14.32668 -14.10924 -14.03771 -13.87903 -13.42319 -13.16014 -12.91280 -12.79457 -12.75334 -12.33689 -12.22541 -11.98653 -11.91065 -11.50164 -11.46037 -10.82364 -10.69853 -10.00191 -9.89894 -9.77590 -9.46732 -8.30204 -6.46890 0.15893 0.35004 1.42636 1.43821 1.57290 1.79727 2.27508 2.45009 2.64864 3.04824 3.17636 3.33681 3.53035 3.79125 3.86773 3.92115 4.02238 4.07111 4.28039 4.33911 4.36846 4.41617 4.46636 4.59478 4.85242 4.96639 5.03510 5.06480 5.10617 5.19284 5.22574 5.23498 5.31556 5.36952 5.48723 5.60879 5.69773 5.84505 5.97811 6.07642 6.64904 6.94235 7.23008 7.52883 8.82306 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.002775 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.545877 B =10086.083980 C =10588.458494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.710 5.710 11 C 0.494 3.506 12 O -0.588 6.588 13 C 0.014 3.986 14 N -0.472 5.472 15 C -0.001 4.001 16 C -0.120 4.120 17 C 0.071 3.929 18 H 0.117 0.883 19 C -0.084 4.084 20 C -0.077 4.077 21 C -0.156 4.156 22 C 0.075 3.925 23 F -0.152 7.152 24 C -0.167 4.167 25 C -0.071 4.071 26 H 0.268 0.732 27 H -0.017 1.017 28 H -0.014 1.014 29 H 0.408 0.592 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.163 0.837 37 H 0.154 0.846 38 H 0.137 0.863 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.467 -22.064 0.878 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.361 5.361 11 C 0.281 3.719 12 O -0.468 6.468 13 C -0.117 4.117 14 N -0.194 5.194 15 C -0.130 4.130 16 C -0.158 4.158 17 C -0.037 4.037 18 H 0.135 0.865 19 C -0.085 4.085 20 C -0.095 4.095 21 C -0.175 4.175 22 C 0.056 3.944 23 F -0.131 7.131 24 C -0.186 4.186 25 C -0.090 4.090 26 H 0.077 0.923 27 H 0.001 0.999 28 H 0.004 0.996 29 H 0.244 0.756 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.181 0.819 37 H 0.172 0.828 38 H 0.155 0.845 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.066 -22.050 0.228 25.136 hybrid contribution 0.369 1.205 0.094 1.264 sum 12.435 -20.845 0.323 24.274 Atomic orbital electron populations 1.70148 1.08331 1.28501 1.50088 1.26091 0.95778 1.03996 0.93883 0.85101 0.79141 0.77258 0.77654 1.17491 1.20581 1.20405 1.21657 0.94324 0.90552 1.52691 0.89737 1.18487 0.88685 0.84440 0.93821 1.46196 1.11124 1.05551 1.73264 1.21324 0.89947 0.84761 0.75841 1.90641 1.19271 1.85367 1.51544 1.22585 0.94782 0.88866 1.05481 1.68857 1.20156 1.00426 1.29984 1.23702 1.01337 0.97070 0.90900 1.23226 0.97357 0.95005 1.00168 1.22477 0.97309 0.90847 0.93111 0.86535 1.19778 0.93600 0.98745 0.96371 1.21205 0.96562 0.95361 0.96404 1.21364 0.99397 1.01639 0.95081 1.18019 0.95273 0.95897 0.85240 1.91467 1.95222 1.74870 1.51530 1.21295 0.96140 1.01108 1.00017 1.20947 1.00301 0.95074 0.92677 0.92269 0.99935 0.99576 0.75645 0.88055 0.86305 0.90447 0.92009 0.89168 0.87456 0.81940 0.82831 0.84486 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.99 42.21 29.54 68.60 2.03 44.23 16 4 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -30.12 9.28 25.60 0.24 -29.89 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.27 14.83 5.43 85.63 0.46 15.30 16 10 N -0.71 -29.70 5.55 -466.79 -2.59 -32.29 16 11 C 0.49 19.52 7.67 87.66 0.67 20.20 16 12 O -0.59 -29.28 15.76 -3.02 -0.05 -29.32 16 13 C 0.01 0.36 5.31 85.56 0.45 0.81 16 14 N -0.47 -11.82 5.35 -911.33 -4.87 -16.69 16 15 C 0.00 -0.03 6.71 83.57 0.56 0.53 16 16 C -0.12 -1.88 7.91 30.94 0.24 -1.64 16 17 C 0.07 1.15 3.28 41.44 0.14 1.29 16 18 H 0.12 1.25 7.71 -2.39 -0.02 1.23 16 19 C -0.08 -1.45 5.38 -19.86 -0.11 -1.56 16 20 C -0.08 -1.03 9.70 22.26 0.22 -0.81 16 21 C -0.16 -2.39 10.03 22.31 0.22 -2.16 16 22 C 0.07 1.49 7.30 22.37 0.16 1.65 16 23 F -0.15 -3.31 17.27 44.97 0.78 -2.54 16 24 C -0.17 -3.38 10.03 22.31 0.22 -3.16 16 25 C -0.07 -1.48 8.87 22.26 0.20 -1.28 16 26 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 28 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 29 H 0.41 13.81 8.32 -92.70 -0.77 13.04 16 30 H 0.10 1.88 7.56 -2.39 -0.02 1.87 16 31 H 0.12 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.08 1.63 7.70 -2.39 -0.02 1.61 16 33 H 0.06 1.83 8.13 -2.38 -0.02 1.81 16 34 H 0.09 1.52 7.65 -2.38 -0.02 1.51 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.16 1.11 8.05 -2.91 -0.02 1.09 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 39 H 0.13 2.92 7.82 -2.91 -0.02 2.90 16 Total: -1.00 -74.99 337.95 0.02 -74.97 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.29 Total: 18.05 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 4.15 Total: -0.16 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -7.18 Total: -105.24 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.05 Total: -29.32 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -74.99 0.02 -74.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852468244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.312 kcal (2) G-P(sol) polarization free energy of solvation -74.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds