Wall clock time and date at job start Tue Mar 31 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38161 * 120.02647 * 2 1 4 4 C 1.38253 * 120.05703 * 180.02562 * 3 2 1 5 5 C 1.38292 * 120.10477 * 359.97438 * 4 3 2 6 6 C 1.38119 * 120.06147 * 359.97438 * 5 4 3 7 7 C 1.38708 * 120.03017 * 180.25105 * 2 1 3 8 8 O 1.35909 * 120.05395 * 0.02562 * 7 2 1 9 9 C 1.42895 * 116.99861 * 180.25485 * 8 7 2 10 10 C 1.53003 * 109.46990 * 180.02562 * 9 8 7 11 11 S 1.81405 * 109.47098 * 180.02562 * 10 9 8 12 12 C 1.81396 * 102.99817 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47151 * 179.97438 * 12 11 10 14 14 C 1.50697 * 115.54947 * 65.33068 * 13 12 11 15 15 H 1.08002 * 120.00265 * 265.65565 * 14 13 12 16 16 C 1.37879 * 120.00121 * 85.65750 * 14 13 12 17 17 N 1.31507 * 119.99912 * 353.69589 * 16 14 13 18 18 Si 1.86798 * 120.00033 * 173.69305 * 16 14 13 19 19 H 1.48499 * 109.47074 * 60.00242 * 18 16 14 20 20 H 1.48507 * 109.47087 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47311 * 300.00051 * 18 16 14 22 22 C 1.53000 * 117.49705 * 279.66570 * 13 12 11 23 23 C 1.53002 * 117.49982 * 211.00221 * 13 12 11 24 24 H 1.09003 * 109.46952 * 90.00298 * 1 2 3 25 25 H 1.08996 * 109.47394 * 210.00303 * 1 2 3 26 26 H 1.09005 * 109.46831 * 330.00088 * 1 2 3 27 27 H 1.07998 * 119.97336 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.94576 * 179.97438 * 4 3 2 29 29 H 1.07997 * 119.96884 * 180.02562 * 5 4 3 30 30 H 1.07994 * 120.02879 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47253 * 299.99576 * 9 8 7 32 32 H 1.08999 * 109.47725 * 60.00079 * 9 8 7 33 33 H 1.09006 * 109.46949 * 299.99258 * 10 9 8 34 34 H 1.08998 * 109.47453 * 59.99747 * 10 9 8 35 35 H 1.09007 * 109.47334 * 299.99928 * 12 11 10 36 36 H 1.08997 * 109.47429 * 60.00104 * 12 11 10 37 37 H 0.97001 * 120.00308 * 174.96624 * 17 16 14 38 38 H 1.08997 * 117.50074 * 359.97438 * 22 13 12 39 39 H 1.08998 * 117.50165 * 145.01971 * 22 13 12 40 40 H 1.08997 * 117.49878 * 214.97770 * 23 13 12 41 41 H 1.09000 * 117.50024 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.2752 0.0009 -0.0005 6 6 3.5887 -1.1976 0.0005 7 6 2.2012 -1.2009 -0.0053 8 8 1.5234 -2.3789 -0.0109 9 6 2.3034 -3.5761 -0.0105 10 6 1.3732 -4.7909 -0.0180 11 16 2.3634 -6.3108 -0.0167 12 6 1.1052 -7.6175 -0.0252 13 6 1.7905 -8.9854 -0.0256 14 6 2.5837 -9.3153 1.2125 15 1 3.6447 -9.1158 1.2433 16 6 1.9550 -9.8719 2.3061 17 7 0.6463 -10.0007 2.3172 18 14 2.9622 -10.4432 3.7719 19 1 3.7116 -9.2922 4.3364 20 1 2.0560 -11.0006 4.8081 21 1 3.9195 -11.4916 3.3364 22 6 2.3164 -9.5117 -1.3625 23 6 1.0699 -10.1364 -0.7305 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6584 2.1315 -0.0004 28 1 4.1195 2.1330 -0.0010 29 1 5.3552 0.0041 -0.0005 30 1 4.1314 -2.1313 0.0009 31 1 2.9360 -3.5980 -0.8979 32 1 2.9285 -3.6023 0.8820 33 1 0.7403 -4.7693 0.8693 34 1 0.7484 -4.7646 -0.9107 35 1 0.4789 -7.5247 0.8622 36 1 0.4872 -7.5209 -0.9178 37 1 0.2101 -10.4578 3.0532 38 1 2.1738 -8.8836 -2.2419 39 1 3.2358 -10.0969 -1.3465 40 1 1.1699 -11.1323 -0.2989 41 1 0.1074 -9.9192 -1.1936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853762315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:49 Heat of formation + Delta-G solvation = -13.976494 kcal Electronic energy + Delta-G solvation = -19903.118499 eV Core-core repulsion = 16874.390681 eV Total energy + Delta-G solvation = -3028.727818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20503 -38.53584 -38.41956 -33.99875 -33.89716 -32.73119 -30.68095 -29.47800 -27.65446 -27.39574 -25.19648 -22.92808 -22.72961 -22.27556 -21.06548 -19.16370 -18.17066 -17.33457 -17.04443 -16.80317 -16.62220 -16.45776 -15.69577 -15.32964 -15.17616 -14.94488 -14.85728 -14.21610 -14.07317 -14.01985 -13.66845 -13.21977 -13.16425 -12.97485 -12.96008 -12.82966 -12.76848 -12.36719 -12.22854 -12.01950 -11.85349 -11.75189 -11.53551 -10.99841 -10.73170 -10.45893 -9.87448 -9.77543 -9.09697 -8.48588 -8.11485 -6.21798 0.37079 0.48142 0.59210 1.42473 1.43279 1.50178 1.80622 2.38247 2.43919 2.80756 3.17522 3.53301 3.67034 3.75137 3.85117 3.96915 4.16648 4.19348 4.22243 4.38944 4.40302 4.42018 4.53561 4.59791 4.62825 4.68115 4.73001 4.78341 4.81574 4.93169 4.98176 5.00474 5.23283 5.31454 5.41770 5.52356 5.57671 5.59885 5.62760 5.77391 5.87887 6.38044 6.39365 6.82613 7.46603 8.96594 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.022424 B = 0.002937 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.369797 B = 9530.548114 C = 9879.007949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.136 4.136 3 C -0.087 4.087 4 C -0.157 4.157 5 C -0.093 4.093 6 C -0.219 4.219 7 C 0.103 3.897 8 O -0.323 6.323 9 C 0.090 3.910 10 C -0.091 4.091 11 S -0.248 6.248 12 C -0.015 4.015 13 C 0.027 3.973 14 C -0.499 4.499 15 H 0.049 0.951 16 C 0.030 3.970 17 N -0.906 5.906 18 Si 0.942 3.058 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.182 4.182 23 C -0.150 4.150 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.260 0.740 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 20.870 -5.890 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.137 4.137 3 C -0.105 4.105 4 C -0.175 4.175 5 C -0.111 4.111 6 C -0.238 4.238 7 C 0.058 3.942 8 O -0.238 6.238 9 C 0.014 3.986 10 C -0.240 4.240 11 S -0.021 6.021 12 C -0.163 4.163 13 C 0.025 3.975 14 C -0.537 4.537 15 H 0.067 0.933 16 C -0.170 4.170 17 N -0.544 5.544 18 Si 0.768 3.232 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.219 4.219 23 C -0.190 4.190 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.171 0.829 28 H 0.168 0.832 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.854 20.742 -5.729 21.707 hybrid contribution -0.844 -0.907 0.990 1.586 sum 2.009 19.835 -4.739 20.492 Atomic orbital electron populations 1.20620 0.89796 1.02978 1.02621 1.19636 0.97475 0.90560 1.06010 1.21237 0.94610 0.97041 0.97632 1.21429 0.94349 0.98900 1.02795 1.21272 1.01041 0.91579 0.97217 1.21496 0.92885 1.00651 1.08738 1.19183 0.91210 0.85604 0.98224 1.85989 1.36442 1.12491 1.88867 1.22249 0.92773 0.80805 1.02761 1.23133 1.00992 0.93894 1.05957 1.86689 1.17883 0.99495 1.98028 1.22850 0.96403 0.95122 1.01970 1.18529 0.98683 0.88897 0.91355 1.20567 0.93855 1.41610 0.97670 0.93290 1.25560 0.95582 0.95876 1.00021 1.70080 1.08815 1.42194 1.33269 0.85861 0.78893 0.78760 0.79665 1.19921 1.21016 1.19802 1.23016 0.97296 1.04566 0.97015 1.22515 0.94613 0.97992 1.03894 0.90978 0.92659 0.89770 0.82869 0.83226 0.83791 0.85231 0.90422 0.91253 0.90081 0.88818 0.92523 0.91419 0.93120 0.88943 0.90411 0.91864 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 9.79 71.24 0.70 -1.23 16 2 C -0.14 -2.96 5.89 -19.77 -0.12 -3.08 16 3 C -0.09 -1.48 9.70 22.26 0.22 -1.26 16 4 C -0.16 -2.49 10.04 22.29 0.22 -2.27 16 5 C -0.09 -1.71 10.04 22.25 0.22 -1.48 16 6 C -0.22 -5.01 9.04 22.36 0.20 -4.81 16 7 C 0.10 2.63 6.66 22.51 0.15 2.78 16 8 O -0.32 -9.02 9.19 -92.53 -0.85 -9.87 16 9 C 0.09 2.45 4.75 71.98 0.34 2.80 16 10 C -0.09 -2.80 6.31 71.98 0.45 -2.35 16 11 S -0.25 -9.58 21.43 -56.49 -1.21 -10.79 16 12 C -0.01 -0.65 5.80 71.98 0.42 -0.24 16 13 C 0.03 1.29 1.34 -52.93 -0.07 1.22 16 14 C -0.50 -27.01 8.49 25.60 0.22 -26.79 16 15 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 16 C 0.03 1.63 5.39 84.66 0.46 2.09 16 17 N -0.91 -50.91 12.90 21.45 0.28 -50.63 16 18 Si 0.94 43.46 29.55 68.60 2.03 45.48 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 C -0.18 -7.60 9.96 30.62 0.30 -7.30 16 23 C -0.15 -6.83 9.40 30.62 0.29 -6.54 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.19 7.54 -2.39 -0.02 1.18 16 26 H 0.08 1.16 8.09 -2.38 -0.02 1.15 16 27 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 28 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.13 2.84 6.30 -2.91 -0.02 2.82 16 31 H 0.08 1.97 7.66 -2.39 -0.02 1.95 16 32 H 0.07 1.90 7.66 -2.39 -0.02 1.88 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 37 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 38 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 39 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -60.37 357.76 5.24 -55.13 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.99 Total: 19.15 kcal Atomic # 6 Polarization: -52.47 SS G_CDS: 4.00 Total: -48.46 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.28 Total: -50.63 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.85 Total: -9.87 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -9.58 SS G_CDS: -1.21 Total: -10.79 kcal Total: -60.37 5.24 -55.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853762315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.153 kcal (2) G-P(sol) polarization free energy of solvation -60.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds