Wall clock time and date at job start Tue Mar 31 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47420 * 2 1 4 4 C 1.50700 * 109.47161 * 239.99929 * 2 1 3 5 5 H 1.08007 * 120.00136 * 245.47018 * 4 2 1 6 6 C 1.37876 * 119.99904 * 65.46408 * 4 2 1 7 7 N 1.31513 * 120.00174 * 9.65683 * 6 4 2 8 8 Si 1.86801 * 119.99820 * 189.64761 * 6 4 2 9 9 H 1.48503 * 109.46923 * 84.99850 * 8 6 4 10 10 H 1.48496 * 109.47261 * 204.99757 * 8 6 4 11 11 H 1.48501 * 109.47645 * 325.00188 * 8 6 4 12 12 C 1.50701 * 109.47041 * 120.00105 * 2 1 3 13 13 O 1.20826 * 120.00176 * 119.99920 * 12 2 1 14 14 O 1.34229 * 119.99730 * 299.99689 * 12 2 1 15 15 C 1.45204 * 116.99954 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.24930 * 29.99886 * 15 14 12 17 17 C 1.50629 * 109.22323 * 270.55218 * 15 14 12 18 18 C 1.38913 * 117.74715 * 42.24198 * 17 15 14 19 19 C 1.37933 * 120.54817 * 179.75936 * 18 17 15 20 20 C 1.38268 * 119.76581 * 0.02562 * 19 18 17 21 21 C 1.37933 * 119.77819 * 0.11291 * 20 19 18 22 22 C 1.37669 * 122.56977 * 222.18372 * 17 15 14 23 23 C 1.50634 * 122.56804 * 0.36875 * 22 17 15 24 24 C 1.52731 * 110.58665 * 342.46784 * 23 22 17 25 25 C 1.52730 * 109.25520 * 149.47274 * 15 14 12 26 26 H 1.08997 * 109.68461 * 51.60090 * 25 15 14 27 27 F 1.39901 * 109.68252 * 291.07777 * 25 15 14 28 28 H 1.09001 * 109.47627 * 63.61448 * 1 2 3 29 29 H 1.09009 * 109.47243 * 183.61337 * 1 2 3 30 30 H 1.09002 * 109.47341 * 303.61492 * 1 2 3 31 31 H 0.96997 * 120.00076 * 180.02562 * 7 6 4 32 32 H 1.07998 * 119.73013 * 359.80246 * 18 17 15 33 33 H 1.07999 * 120.11772 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.11193 * 180.12638 * 20 19 18 35 35 H 1.07993 * 119.72999 * 179.97438 * 21 20 19 36 36 H 1.08997 * 109.25415 * 222.18312 * 23 22 17 37 37 H 1.08996 * 109.25436 * 102.75240 * 23 22 17 38 38 H 1.09000 * 109.68525 * 291.33346 * 24 23 22 39 39 H 1.09004 * 109.68302 * 170.77920 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5784 -1.6372 -1.1338 6 6 1.7946 -0.1773 -2.4796 7 7 1.3012 1.0364 -2.5936 8 14 2.1737 -1.1790 -4.0101 9 1 1.0201 -2.0603 -4.3231 10 1 2.4211 -0.2631 -5.1524 11 1 3.3809 -2.0101 -3.7714 12 6 2.0322 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7080 -0.2518 2.4496 15 6 2.2276 -0.9857 3.5897 16 1 3.1803 -1.4414 3.3198 17 6 1.2503 -2.0667 3.9709 18 6 0.6611 -2.7965 2.9463 19 6 -0.2383 -3.8031 3.2300 20 6 -0.5570 -4.0883 4.5448 21 6 0.0247 -3.3629 5.5636 22 6 0.9304 -2.3485 5.2799 23 6 1.5247 -1.5941 6.4404 24 6 2.7801 -0.8410 6.0050 25 6 2.4425 -0.0210 4.7541 26 1 1.5330 0.5544 4.9268 27 9 3.4999 0.8461 4.4587 28 1 -0.3634 0.4567 -0.9206 29 1 -0.3634 -1.0257 0.0648 30 1 -0.3634 0.5689 0.8558 31 1 1.1336 1.4112 -3.4723 32 1 0.9098 -2.5745 1.9190 33 1 -0.6919 -4.3664 2.4279 34 1 -1.2590 -4.8766 4.7734 35 1 -0.2252 -3.5860 6.5902 36 1 1.7838 -2.2976 7.2315 37 1 0.7917 -0.8820 6.8194 38 1 3.5735 -1.5521 5.7748 39 1 3.1042 -0.1746 6.8044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893729927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:26 Heat of formation + Delta-G solvation = -127.086193 kcal Electronic energy + Delta-G solvation = -23858.359578 eV Core-core repulsion = 20258.513779 eV Total energy + Delta-G solvation = -3599.845799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.60667 -40.52403 -39.07165 -36.20295 -35.22818 -33.88432 -31.85958 -30.65734 -30.03931 -28.47559 -25.19979 -24.24974 -22.99764 -22.78762 -21.89768 -19.90254 -19.83559 -17.07883 -17.03535 -16.38768 -16.20340 -15.89554 -15.40518 -15.10278 -14.86877 -14.57894 -14.34996 -14.15369 -13.75042 -13.16578 -13.00087 -12.71440 -12.68007 -12.43575 -12.17980 -11.77808 -11.67673 -11.42845 -11.18650 -11.06377 -10.97038 -10.80707 -10.72686 -10.60831 -10.41823 -10.07810 -10.01430 -9.17361 -9.09866 -8.73794 -8.62042 -8.46357 -6.14885 -4.16344 1.28433 1.40581 3.20110 3.25055 3.30314 3.35887 3.43269 3.80842 4.25486 4.30092 4.40162 4.54736 4.67492 4.80108 4.86901 5.00743 5.11106 5.20559 5.23718 5.30485 5.38779 5.47866 5.59130 5.72453 5.76602 5.88798 6.00815 6.04949 6.16186 6.45171 6.55701 6.57066 6.62843 6.77689 6.78201 7.00894 7.11705 7.38101 7.59447 7.87486 8.07933 8.76230 8.91841 9.47906 10.95360 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.004886 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.908678 B = 5729.051500 C = 6616.363684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.056 3.944 3 H 0.072 0.928 4 C -0.516 4.516 5 H 0.076 0.924 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.466 3.534 13 O -0.511 6.511 14 O -0.351 6.351 15 C 0.099 3.901 16 H 0.102 0.898 17 C -0.092 4.092 18 C -0.095 4.095 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.127 4.127 22 C -0.075 4.075 23 C -0.077 4.077 24 C -0.142 4.142 25 C 0.101 3.899 26 H 0.098 0.902 27 F -0.203 7.203 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 -5.224 18.159 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.037 3.963 3 H 0.090 0.910 4 C -0.554 4.554 5 H 0.094 0.906 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.728 3.272 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.311 3.689 13 O -0.398 6.398 14 O -0.269 6.269 15 C 0.043 3.957 16 H 0.119 0.881 17 C -0.092 4.092 18 C -0.113 4.113 19 C -0.139 4.139 20 C -0.133 4.133 21 C -0.145 4.145 22 C -0.075 4.075 23 C -0.114 4.114 24 C -0.180 4.180 25 C 0.065 3.935 26 H 0.116 0.884 27 F -0.184 7.184 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.830 -5.369 17.999 18.994 hybrid contribution 0.269 -0.594 -0.977 1.175 sum -2.561 -5.963 17.021 18.216 Atomic orbital electron populations 1.21668 0.95911 0.99441 1.01442 1.18798 0.94404 0.97665 0.85391 0.91036 1.21065 1.36543 1.08998 0.88789 0.90606 1.24927 0.94973 0.94704 0.99117 1.69963 1.44599 1.13816 1.24266 0.86451 0.78972 0.79938 0.81807 1.20394 1.21199 1.19705 1.25444 0.76349 0.83166 0.83975 1.90511 1.36193 1.26687 1.86381 1.86786 1.70083 1.55062 1.14985 1.21784 0.97564 0.90753 0.85553 0.88063 1.19627 0.98910 0.97609 0.93084 1.21507 0.95196 0.94444 1.00123 1.21125 0.98135 0.97877 0.96763 1.21096 0.99719 0.99557 0.92915 1.21022 0.97827 0.96417 0.99184 1.19519 0.97722 0.97219 0.93073 1.20437 0.96334 0.98787 0.95851 1.22152 0.99165 0.99842 0.96795 1.21552 0.88878 0.89574 0.93507 0.88361 1.92849 1.59474 1.71447 1.94607 0.90200 0.94849 0.95283 0.92626 0.85042 0.85759 0.86032 0.86057 0.89747 0.89879 0.90089 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.00 37.15 0.33 -2.60 16 2 C 0.06 1.43 2.60 -92.93 -0.24 1.19 16 3 H 0.07 1.93 8.09 -51.93 -0.42 1.51 16 4 C -0.52 -14.40 8.28 -34.44 -0.29 -14.69 16 5 H 0.08 2.20 6.79 -52.48 -0.36 1.84 16 6 C 0.07 1.79 5.17 -17.82 -0.09 1.70 16 7 N -0.89 -24.90 12.17 55.43 0.67 -24.22 16 8 Si 0.90 21.41 29.55 -169.99 -5.02 16.39 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 C 0.47 10.92 5.62 36.01 0.20 11.13 16 13 O -0.51 -12.78 13.30 -18.75 -0.25 -13.03 16 14 O -0.35 -7.20 9.55 -39.25 -0.37 -7.57 16 15 C 0.10 1.70 2.33 -28.06 -0.07 1.63 16 16 H 0.10 1.87 7.14 -51.93 -0.37 1.50 16 17 C -0.09 -1.45 5.57 -104.61 -0.58 -2.03 16 18 C -0.09 -1.62 9.05 -39.44 -0.36 -1.98 16 19 C -0.12 -1.71 10.05 -39.68 -0.40 -2.11 16 20 C -0.11 -1.34 10.05 -39.68 -0.40 -1.74 16 21 C -0.13 -1.40 9.61 -39.44 -0.38 -1.78 16 22 C -0.08 -0.93 5.74 -104.61 -0.60 -1.53 16 23 C -0.08 -0.69 5.67 -28.05 -0.16 -0.85 16 24 C -0.14 -1.42 5.73 -26.70 -0.15 -1.57 16 25 C 0.10 1.39 3.55 -26.70 -0.09 1.30 16 26 H 0.10 1.25 8.10 -51.93 -0.42 0.82 16 27 F -0.20 -3.27 17.10 2.25 0.04 -3.23 16 28 H 0.08 1.98 6.84 -51.93 -0.35 1.62 16 29 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.13 2.64 4.90 -52.49 -0.26 2.39 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 0.99 8.05 -52.49 -0.42 0.56 16 36 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -30.47 324.14 -8.44 -38.91 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.12 Total: 1.82 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -3.27 Total: -13.95 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.67 Total: -24.22 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.62 Total: -20.60 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.47 -8.44 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893729927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.176 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds