Wall clock time and date at job start Tue Mar 31 2020 06:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00290 * 2 1 4 4 H 1.48501 * 109.47111 * 239.99888 * 3 2 1 5 5 H 1.48499 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47417 * 119.99537 * 3 2 1 7 7 C 1.37877 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00189 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99812 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46829 * 180.02562 * 9 7 2 11 11 C 1.46842 * 111.00077 * 65.79231 * 10 9 7 12 12 C 1.53041 * 109.52407 * 185.84059 * 11 10 9 13 13 C 1.53124 * 109.27510 * 300.81747 * 12 11 10 14 14 C 1.53123 * 109.15980 * 57.65355 * 13 12 11 15 15 H 1.09006 * 109.50264 * 62.28502 * 14 13 12 16 16 C 1.50704 * 109.50254 * 182.40170 * 14 13 12 17 17 N 1.28327 * 124.90338 * 239.80461 * 16 14 13 18 18 C 1.33483 * 117.83731 * 179.97438 * 17 16 14 19 19 C 1.33875 * 113.18300 * 0.06585 * 18 17 16 20 20 S 1.70749 * 124.90035 * 59.50327 * 16 14 13 21 21 C 1.51710 * 110.89454 * 179.91833 * 19 18 17 22 22 C 1.54299 * 104.80926 * 342.80338 * 21 19 18 23 23 C 1.52620 * 137.15948 * 180.13376 * 18 17 16 24 24 C 1.46846 * 110.99717 * 189.99933 * 10 9 7 25 25 H 0.96997 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47101 * 60.00178 * 9 7 2 27 27 H 1.08994 * 109.46993 * 299.99771 * 9 7 2 28 28 H 1.09006 * 109.46447 * 305.84971 * 11 10 9 29 29 H 1.08994 * 109.46873 * 65.82005 * 11 10 9 30 30 H 1.08997 * 109.50282 * 60.75542 * 12 11 10 31 31 H 1.08999 * 109.50511 * 180.87834 * 12 11 10 32 32 H 1.09000 * 109.52368 * 297.74991 * 13 12 11 33 33 H 1.08997 * 109.52219 * 177.55867 * 13 12 11 34 34 H 1.09005 * 110.36701 * 223.97325 * 21 19 18 35 35 H 1.08998 * 110.46805 * 101.68528 * 21 19 18 36 36 H 1.09000 * 110.97488 * 268.06722 * 22 21 19 37 37 H 1.09003 * 111.00363 * 144.31839 * 22 21 19 38 38 H 1.09004 * 110.31519 * 316.27372 * 23 18 17 39 39 H 1.08995 * 110.32143 * 78.36341 * 23 18 17 40 40 H 1.08999 * 109.46089 * 54.14588 * 24 10 9 41 41 H 1.08994 * 109.45639 * 294.17306 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0018 11 6 2.9739 -3.6499 1.2527 12 6 4.0539 -4.7302 1.1603 13 6 3.3909 -6.0876 0.9095 14 6 2.5581 -6.0107 -0.3731 15 1 3.2117 -5.7990 -1.2194 16 6 1.8548 -7.3248 -0.5959 17 7 2.0062 -8.0731 -1.6274 18 6 1.3114 -9.2116 -1.6789 19 6 0.5335 -9.4033 -0.6064 20 16 0.7471 -8.0366 0.4912 21 6 -0.2323 -10.7080 -0.7196 22 6 -0.1500 -11.0853 -2.2136 23 6 1.1544 -10.3842 -2.6432 24 6 1.5215 -4.8932 -0.2362 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 3.4436 -2.6801 1.4171 29 1 2.3053 -3.8749 2.0836 30 1 4.7310 -4.4985 0.3382 31 1 4.6138 -4.7659 2.0948 32 1 2.7434 -6.3375 1.7499 33 1 4.1589 -6.8533 0.7998 34 1 -1.2709 -10.5655 -0.4210 35 1 0.2354 -11.4790 -0.1073 36 1 -1.0045 -10.6905 -2.7633 37 1 -0.0724 -12.1651 -2.3401 38 1 1.0699 -10.0226 -3.6681 39 1 2.0002 -11.0655 -2.5515 40 1 0.9363 -4.8263 -1.1534 41 1 0.8598 -5.1122 0.6017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932195755.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:54 Heat of formation + Delta-G solvation = 38.753523 kcal Electronic energy + Delta-G solvation = -20831.368516 eV Core-core repulsion = 17837.219994 eV Total energy + Delta-G solvation = -2994.148522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36787 -38.54519 -36.19853 -33.72985 -31.98220 -31.07628 -28.64147 -27.78437 -26.95375 -24.37493 -23.59345 -22.25191 -21.57175 -20.71256 -19.60468 -18.56619 -17.85127 -16.28743 -16.10538 -15.41511 -14.50435 -14.38052 -14.28779 -14.12347 -14.03542 -13.65502 -13.29981 -13.06674 -12.85504 -12.69829 -12.32969 -11.98108 -11.92949 -11.49182 -11.37148 -11.25885 -11.18730 -10.87606 -10.82709 -10.67067 -10.41224 -10.28184 -10.10593 -9.71875 -9.44569 -9.21114 -9.14171 -8.50402 -8.43030 -7.26735 -6.02277 -4.03809 0.76637 1.24904 1.87026 2.76366 3.34206 3.38269 3.41169 3.64782 4.30953 4.40184 4.49862 4.67585 4.81947 5.00577 5.08232 5.19165 5.21854 5.32905 5.34283 5.40890 5.45146 5.50388 5.60364 5.69372 5.74648 5.80945 5.84131 5.87644 6.11192 6.12675 6.17385 6.22945 6.31301 6.42009 6.70233 6.73490 7.29190 7.33606 7.78866 7.80328 8.08277 8.19070 8.53203 9.03408 9.60321 11.08655 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029525 B = 0.003332 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.114379 B = 8401.873478 C = 8767.747484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.533 5.533 11 C 0.061 3.939 12 C -0.115 4.115 13 C -0.109 4.109 14 C -0.012 4.012 15 H 0.109 0.891 16 C 0.083 3.917 17 N -0.470 5.470 18 C 0.045 3.955 19 C -0.266 4.266 20 S 0.137 5.863 21 C -0.036 4.036 22 C -0.116 4.116 23 C -0.039 4.039 24 C 0.067 3.933 25 H 0.262 0.738 26 H 0.031 0.969 27 H -0.008 1.008 28 H 0.087 0.913 29 H 0.020 0.980 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 -22.080 0.391 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.258 5.258 11 C -0.067 4.067 12 C -0.153 4.153 13 C -0.148 4.148 14 C -0.034 4.034 15 H 0.127 0.873 16 C -0.197 4.197 17 N -0.182 5.182 18 C -0.086 4.086 19 C -0.386 4.386 20 S 0.394 5.606 21 C -0.076 4.076 22 C -0.155 4.155 23 C -0.079 4.079 24 C -0.063 4.063 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.010 0.990 28 H 0.105 0.895 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.577 -21.369 0.598 21.435 hybrid contribution -0.180 0.317 -0.060 0.369 sum 1.397 -21.052 0.539 21.105 Atomic orbital electron populations 1.69950 1.06079 1.26907 1.50904 1.24990 0.94861 0.99313 0.95427 0.86553 0.79429 0.82720 0.78665 1.20132 1.21387 1.20264 1.21116 0.93495 0.89837 1.50206 0.91791 1.19713 0.90001 0.87132 0.96186 1.61984 1.27876 1.01989 1.33937 1.21999 0.94953 0.99259 0.90522 1.21626 0.98420 0.93654 1.01634 1.21679 0.98812 0.98644 0.95665 1.20007 0.96748 0.86084 1.00577 0.87281 1.26946 0.99742 1.00871 0.92153 1.65419 1.24561 1.04288 1.23974 1.21628 0.95551 0.93984 0.97445 1.27026 1.08422 1.03163 1.00019 1.83810 1.41488 1.12513 1.22741 1.20603 0.99163 0.90496 0.97288 1.22353 0.97494 1.00776 0.94894 1.20828 0.98225 0.91452 0.97411 1.22028 0.93799 0.89945 1.00552 0.92857 0.95137 0.99041 0.89467 0.96149 0.90982 0.91782 0.92219 0.91875 0.90533 0.90027 0.90358 0.89646 0.90060 0.89751 0.90961 0.95692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.21 8.43 -34.44 -0.29 -14.50 16 8 H 0.06 1.76 7.12 -52.49 -0.37 1.38 16 9 C 0.19 5.09 4.72 -4.97 -0.02 5.06 16 10 N -0.53 -11.51 4.65 -236.12 -1.10 -12.61 16 11 C 0.06 1.16 5.29 -3.83 -0.02 1.14 16 12 C -0.12 -1.73 6.09 -26.65 -0.16 -1.89 16 13 C -0.11 -1.54 5.20 -26.60 -0.14 -1.68 16 14 C -0.01 -0.19 2.78 -91.69 -0.25 -0.44 16 15 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 16 C 0.08 1.29 6.02 -13.74 -0.08 1.21 16 17 N -0.47 -7.63 10.54 -7.23 -0.08 -7.70 16 18 C 0.04 0.61 7.70 -82.45 -0.63 -0.02 16 19 C -0.27 -3.32 7.42 -35.34 -0.26 -3.58 16 20 S 0.14 1.84 22.45 -107.50 -2.41 -0.57 16 21 C -0.04 -0.30 6.80 -26.70 -0.18 -0.49 16 22 C -0.12 -0.82 7.12 -25.43 -0.18 -1.00 16 23 C -0.04 -0.37 6.81 -26.30 -0.18 -0.55 16 24 C 0.07 1.25 4.65 -3.83 -0.02 1.23 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.03 0.86 7.99 -51.93 -0.41 0.44 16 27 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 28 H 0.09 1.79 6.70 -51.93 -0.35 1.45 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.81 7.84 -51.93 -0.41 0.41 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.41 8.02 -51.93 -0.42 1.00 16 41 H 0.02 0.46 7.91 -51.93 -0.41 0.05 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -31.16 337.84 -11.88 -43.04 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -6.58 Total: -3.78 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.53 Total: -14.04 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.44 Total: -46.35 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.41 Total: -0.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.16 -11.88 -43.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932195755.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.795 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds