Wall clock time and date at job start Tue Mar 31 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00290 * 2 1 4 4 H 1.48501 * 109.47111 * 239.99888 * 3 2 1 5 5 H 1.48499 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47417 * 119.99537 * 3 2 1 7 7 C 1.37877 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00189 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99812 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46829 * 180.02562 * 9 7 2 11 11 C 1.46842 * 111.00077 * 65.79231 * 10 9 7 12 12 C 1.53041 * 109.52407 * 185.84059 * 11 10 9 13 13 C 1.53124 * 109.27510 * 300.81747 * 12 11 10 14 14 C 1.53123 * 109.15980 * 57.65355 * 13 12 11 15 15 H 1.09006 * 109.50264 * 62.28502 * 14 13 12 16 16 C 1.50704 * 109.50254 * 182.40170 * 14 13 12 17 17 N 1.28327 * 124.90338 * 239.80461 * 16 14 13 18 18 C 1.33483 * 117.83731 * 179.97438 * 17 16 14 19 19 C 1.33875 * 113.18300 * 0.06585 * 18 17 16 20 20 S 1.70749 * 124.90035 * 59.50327 * 16 14 13 21 21 C 1.51710 * 110.89454 * 179.91833 * 19 18 17 22 22 C 1.54299 * 104.80926 * 342.80338 * 21 19 18 23 23 C 1.52620 * 137.15948 * 180.13376 * 18 17 16 24 24 C 1.46846 * 110.99717 * 189.99933 * 10 9 7 25 25 H 0.96997 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47101 * 60.00178 * 9 7 2 27 27 H 1.08994 * 109.46993 * 299.99771 * 9 7 2 28 28 H 1.09006 * 109.46447 * 305.84971 * 11 10 9 29 29 H 1.08994 * 109.46873 * 65.82005 * 11 10 9 30 30 H 1.08997 * 109.50282 * 60.75542 * 12 11 10 31 31 H 1.08999 * 109.50511 * 180.87834 * 12 11 10 32 32 H 1.09000 * 109.52368 * 297.74991 * 13 12 11 33 33 H 1.08997 * 109.52219 * 177.55867 * 13 12 11 34 34 H 1.09005 * 110.36701 * 223.97325 * 21 19 18 35 35 H 1.08998 * 110.46805 * 101.68528 * 21 19 18 36 36 H 1.09000 * 110.97488 * 268.06722 * 22 21 19 37 37 H 1.09003 * 111.00363 * 144.31839 * 22 21 19 38 38 H 1.09004 * 110.31519 * 316.27372 * 23 18 17 39 39 H 1.08995 * 110.32143 * 78.36341 * 23 18 17 40 40 H 1.08999 * 109.46089 * 54.14588 * 24 10 9 41 41 H 1.08994 * 109.45639 * 294.17306 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0018 11 6 2.9739 -3.6499 1.2527 12 6 4.0539 -4.7302 1.1603 13 6 3.3909 -6.0876 0.9095 14 6 2.5581 -6.0107 -0.3731 15 1 3.2117 -5.7990 -1.2194 16 6 1.8548 -7.3248 -0.5959 17 7 2.0062 -8.0731 -1.6274 18 6 1.3114 -9.2116 -1.6789 19 6 0.5335 -9.4033 -0.6064 20 16 0.7471 -8.0366 0.4912 21 6 -0.2323 -10.7080 -0.7196 22 6 -0.1500 -11.0853 -2.2136 23 6 1.1544 -10.3842 -2.6432 24 6 1.5215 -4.8932 -0.2362 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 3.4436 -2.6801 1.4171 29 1 2.3053 -3.8749 2.0836 30 1 4.7310 -4.4985 0.3382 31 1 4.6138 -4.7659 2.0948 32 1 2.7434 -6.3375 1.7499 33 1 4.1589 -6.8533 0.7998 34 1 -1.2709 -10.5655 -0.4210 35 1 0.2354 -11.4790 -0.1073 36 1 -1.0045 -10.6905 -2.7633 37 1 -0.0724 -12.1651 -2.3401 38 1 1.0699 -10.0226 -3.6681 39 1 2.0002 -11.0655 -2.5515 40 1 0.9363 -4.8263 -1.1534 41 1 0.8598 -5.1122 0.6017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932195755.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:53 Heat of formation + Delta-G solvation = 19.819597 kcal Electronic energy + Delta-G solvation = -20832.189552 eV Core-core repulsion = 17837.219994 eV Total energy + Delta-G solvation = -2994.969558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37942 -39.98067 -37.20145 -35.49681 -33.86281 -32.41190 -29.41391 -29.21941 -28.47823 -25.78790 -25.19779 -23.54558 -22.90353 -21.86823 -20.87769 -19.69979 -18.90295 -18.42658 -17.09159 -16.82277 -16.20991 -15.90843 -15.62865 -15.35754 -15.13476 -14.95416 -14.47847 -14.28924 -14.08990 -13.88510 -13.72849 -13.57928 -13.07484 -12.94188 -12.71177 -12.56273 -12.41744 -12.12191 -12.11985 -12.08618 -11.91644 -11.73015 -11.70813 -11.34184 -11.15143 -10.62251 -10.55646 -10.22236 -9.50770 -9.07678 -8.21287 -6.31858 -0.29573 0.22152 0.80514 1.41259 1.45004 1.52712 1.69711 2.39425 2.62958 3.11055 3.25412 3.57247 3.65426 3.76326 3.84447 4.01567 4.13229 4.19494 4.27902 4.33254 4.51840 4.56317 4.63624 4.68274 4.74588 4.75636 4.83883 4.86719 4.91495 4.99243 5.05613 5.10343 5.13439 5.18288 5.25370 5.29263 5.31166 5.42673 5.63826 6.02174 6.30906 6.57070 6.72801 6.83779 7.37877 8.90043 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029525 B = 0.003332 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.114379 B = 8401.873478 C = 8767.747484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.541 5.541 11 C 0.059 3.941 12 C -0.105 4.105 13 C -0.103 4.103 14 C -0.001 4.001 15 H 0.095 0.905 16 C 0.058 3.942 17 N -0.496 5.496 18 C 0.013 3.987 19 C -0.258 4.258 20 S 0.142 5.858 21 C -0.037 4.037 22 C -0.105 4.105 23 C -0.040 4.040 24 C 0.072 3.928 25 H 0.265 0.735 26 H -0.001 1.001 27 H -0.036 1.036 28 H 0.069 0.931 29 H 0.018 0.982 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -24.059 0.850 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.265 5.265 11 C -0.068 4.068 12 C -0.142 4.142 13 C -0.141 4.141 14 C -0.023 4.023 15 H 0.113 0.887 16 C -0.221 4.221 17 N -0.209 5.209 18 C -0.117 4.117 19 C -0.379 4.379 20 S 0.400 5.600 21 C -0.077 4.077 22 C -0.144 4.144 23 C -0.080 4.080 24 C -0.058 4.058 25 H 0.073 0.927 26 H 0.017 0.983 27 H -0.018 1.018 28 H 0.087 0.913 29 H 0.036 0.964 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.136 0.864 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.552 -23.370 1.058 23.533 hybrid contribution -0.553 0.839 -0.219 1.029 sum 1.999 -22.530 0.839 22.635 Atomic orbital electron populations 1.70089 1.07839 1.28030 1.51679 1.25949 0.95748 1.03313 0.94703 0.85403 0.78124 0.77679 0.79224 1.19378 1.20898 1.18900 1.21425 0.93748 0.90798 1.50234 0.91521 1.19354 0.90084 0.88925 0.93321 1.61906 1.26948 1.01992 1.35689 1.22062 0.95577 1.00108 0.89092 1.21572 0.96995 0.92374 1.03293 1.21661 0.99098 0.98651 0.94703 1.19779 0.95746 0.85529 1.01252 0.88651 1.26703 1.01213 1.01022 0.93194 1.65398 1.25612 1.05506 1.24419 1.22361 0.95776 0.94290 0.99278 1.27658 1.07798 1.03727 0.98744 1.83686 1.40701 1.13126 1.22511 1.20863 0.99364 0.88699 0.98804 1.22404 0.96078 1.02475 0.93442 1.21039 1.00173 0.90286 0.96477 1.21974 0.94610 0.89715 0.99486 0.92653 0.98295 1.01837 0.91279 0.96401 0.91095 0.88613 0.91463 0.89669 0.89393 0.87970 0.90163 0.86372 0.90192 0.88359 0.92951 0.95639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.52 -30.19 8.43 25.60 0.22 -29.97 16 8 H 0.07 3.72 7.12 -2.91 -0.02 3.70 16 9 C 0.21 11.57 4.72 85.56 0.40 11.97 16 10 N -0.54 -24.33 4.65 -900.94 -4.19 -28.52 16 11 C 0.06 2.29 5.29 86.33 0.46 2.75 16 12 C -0.10 -2.99 6.09 30.65 0.19 -2.80 16 13 C -0.10 -2.76 5.20 30.68 0.16 -2.60 16 14 C 0.00 -0.02 2.78 -11.49 -0.03 -0.05 16 15 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 16 C 0.06 1.81 6.02 88.62 0.53 2.35 16 17 N -0.50 -16.13 10.54 -176.79 -1.86 -17.99 16 18 C 0.01 0.33 7.70 41.93 0.32 0.66 16 19 C -0.26 -6.04 7.42 25.02 0.19 -5.86 16 20 S 0.14 3.76 22.45 -56.49 -1.27 2.49 16 21 C -0.04 -0.52 6.80 30.61 0.21 -0.31 16 22 C -0.10 -1.12 7.12 31.44 0.22 -0.90 16 23 C -0.04 -0.67 6.81 30.87 0.21 -0.46 16 24 C 0.07 2.81 4.65 86.33 0.40 3.22 16 25 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.00 -0.06 7.99 -2.39 -0.02 -0.08 16 27 H -0.04 -2.14 8.12 -2.39 -0.02 -2.16 16 28 H 0.07 2.89 6.70 -2.38 -0.02 2.87 16 29 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 1.72 7.84 -2.39 -0.02 1.71 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 2.21 8.02 -2.39 -0.02 2.19 16 41 H 0.03 0.99 7.91 -2.39 -0.02 0.97 16 Total: -1.00 -70.05 337.84 -0.06 -70.11 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.00 Total: 5.75 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 3.94 Total: -21.50 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -5.77 Total: -103.55 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.27 Total: 2.49 kcal Total: -70.05 -0.06 -70.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932195755.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.934 kcal (2) G-P(sol) polarization free energy of solvation -70.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds