Wall clock time and date at job start Tue Mar 31 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48503 * 109.47098 * 270.00655 * 3 2 1 5 5 H 1.48503 * 109.47038 * 30.00113 * 3 2 1 6 6 H 1.48500 * 109.47298 * 150.00584 * 3 2 1 7 7 C 1.37883 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99425 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00325 * 179.97438 * 7 2 1 10 10 N 1.46895 * 109.47231 * 184.87876 * 9 7 2 11 11 C 1.46846 * 111.00096 * 64.56792 * 10 9 7 12 12 C 1.53032 * 109.51724 * 174.16824 * 11 10 9 13 13 C 1.53100 * 109.29412 * 59.18566 * 12 11 10 14 14 C 1.50701 * 109.52545 * 182.43923 * 13 12 11 15 15 N 1.28328 * 124.90693 * 59.37172 * 14 13 12 16 16 C 1.33482 * 117.84079 * 179.85058 * 15 14 13 17 17 C 1.33874 * 113.17935 * 0.40133 * 16 15 14 18 18 S 1.70747 * 124.89757 * 239.67576 * 14 13 12 19 19 C 1.51709 * 110.89484 * 179.82033 * 17 16 15 20 20 C 1.54301 * 104.80472 * 17.23075 * 19 17 16 21 21 C 1.52615 * 137.16016 * 180.02562 * 16 15 14 22 22 C 1.53117 * 109.15035 * 302.34035 * 13 12 11 23 23 C 1.46850 * 110.99999 * 300.36112 * 10 9 7 24 24 H 0.97008 * 120.00320 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46934 * 64.87889 * 9 7 2 26 26 H 1.08995 * 109.47204 * 304.88149 * 9 7 2 27 27 H 1.08997 * 109.46319 * 294.17642 * 11 10 9 28 28 H 1.09000 * 109.45826 * 54.15508 * 11 10 9 29 29 H 1.09005 * 109.50793 * 179.12083 * 12 11 10 30 30 H 1.09005 * 109.50472 * 299.23137 * 12 11 10 31 31 H 1.08992 * 109.52111 * 62.23833 * 13 12 11 32 32 H 1.08998 * 110.37767 * 136.06468 * 19 17 16 33 33 H 1.09001 * 110.37339 * 258.28979 * 19 17 16 34 34 H 1.09008 * 110.97114 * 91.92393 * 20 19 17 35 35 H 1.09007 * 110.97013 * 215.64765 * 20 19 17 36 36 H 1.09000 * 110.31667 * 44.04957 * 21 16 15 37 37 H 1.09002 * 110.31950 * 281.86101 * 21 16 15 38 38 H 1.09001 * 109.50579 * 297.70986 * 22 13 12 39 39 H 1.09005 * 109.50336 * 177.59175 * 22 13 12 40 40 H 1.09003 * 109.46357 * 305.85201 * 23 10 9 41 41 H 1.09005 * 109.46647 * 65.83192 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5740 -0.1194 11 6 3.6210 -3.1583 -1.4119 12 6 4.2683 -4.5371 -1.5598 13 6 3.8031 -5.4399 -0.4141 14 6 4.4838 -6.7802 -0.5208 15 7 5.7538 -6.9628 -0.4963 16 6 6.2056 -8.2146 -0.5990 17 6 5.2270 -9.1195 -0.7245 18 16 3.6767 -8.2742 -0.6990 19 6 5.7971 -10.5205 -0.8413 20 6 7.2482 -10.3994 -0.3310 21 6 7.5602 -8.9172 -0.6200 22 6 4.1681 -4.7854 0.9211 23 6 3.5236 -3.3994 0.9974 24 1 -0.4851 0.8401 0.0004 25 1 3.8752 -0.7580 0.9294 26 1 3.8745 -0.6062 -0.8441 27 1 2.5367 -3.2592 -1.4600 28 1 3.9615 -2.5088 -2.2182 29 1 3.9734 -4.9773 -2.5124 30 1 5.3530 -4.4354 -1.5256 31 1 2.7228 -5.5732 -0.4711 32 1 5.2322 -11.2133 -0.2177 33 1 5.7847 -10.8498 -1.8803 34 1 7.3049 -10.6091 0.7372 35 1 7.9148 -11.0553 -0.8911 36 1 8.2102 -8.5093 0.1541 37 1 8.0258 -8.8125 -1.6001 38 1 5.2513 -4.6876 0.9944 39 1 3.8016 -5.4028 1.7413 40 1 3.7933 -2.9249 1.9410 41 1 2.4398 -3.4992 0.9379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932622726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:31 Heat of formation + Delta-G solvation = 41.188509 kcal Electronic energy + Delta-G solvation = -20892.259465 eV Core-core repulsion = 17898.216532 eV Total energy + Delta-G solvation = -2994.042933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43218 -38.49964 -36.28623 -33.74564 -32.03399 -30.28634 -28.73124 -28.56783 -26.97868 -24.84202 -22.69641 -22.50375 -21.48743 -20.81077 -19.58342 -18.19017 -18.01054 -16.72485 -16.13655 -15.31757 -14.60061 -14.33485 -14.16727 -14.08301 -14.06871 -13.70579 -13.18867 -12.96994 -12.90116 -12.73723 -12.36623 -12.00222 -11.84877 -11.52283 -11.40709 -11.21570 -11.16456 -11.03741 -10.65827 -10.59464 -10.39708 -10.14061 -9.95352 -9.90054 -9.51213 -9.28081 -9.20102 -8.59280 -8.53167 -7.16535 -6.10784 -4.10509 0.74437 1.20737 1.80643 2.75879 3.28216 3.36050 3.40652 3.66941 4.27823 4.40085 4.49471 4.64218 4.84122 4.96160 5.16305 5.19292 5.20825 5.24645 5.32892 5.37554 5.48203 5.51433 5.59530 5.79656 5.80308 5.81089 6.02314 6.04557 6.10605 6.20490 6.27502 6.42355 6.49684 6.62380 6.78162 6.90197 6.97393 7.10978 7.57308 7.79510 8.07815 8.14941 8.44891 8.91620 9.52618 11.02106 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.041902 B = 0.003192 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.065051 B = 8770.975710 C = 9075.737722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.154 3.846 10 N -0.534 5.534 11 C 0.063 3.937 12 C -0.100 4.100 13 C -0.010 4.010 14 C 0.086 3.914 15 N -0.462 5.462 16 C 0.048 3.952 17 C -0.265 4.265 18 S 0.119 5.881 19 C -0.035 4.035 20 C -0.116 4.116 21 C -0.040 4.040 22 C -0.100 4.100 23 C 0.064 3.936 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.025 0.975 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.949 -20.781 -1.653 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.093 0.907 9 C 0.028 3.972 10 N -0.258 5.258 11 C -0.065 4.065 12 C -0.139 4.139 13 C -0.033 4.033 14 C -0.194 4.194 15 N -0.175 5.175 16 C -0.083 4.083 17 C -0.386 4.386 18 S 0.378 5.622 19 C -0.075 4.075 20 C -0.155 4.155 21 C -0.080 4.080 22 C -0.140 4.140 23 C -0.065 4.065 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.549 -20.489 -1.650 23.578 hybrid contribution 0.089 0.785 -0.071 0.793 sum 11.638 -19.704 -1.722 22.949 Atomic orbital electron populations 1.69925 1.06385 1.27003 1.50490 1.24974 0.94686 0.99245 0.94173 0.86794 0.80447 0.83545 0.78620 1.20214 1.21355 1.18803 1.21718 0.90741 0.94667 1.51891 0.90691 1.20164 0.94520 0.85728 0.96834 1.62371 1.58732 1.03589 1.01081 1.21874 0.98506 0.93327 0.92842 1.21631 1.02017 0.94756 0.95516 1.20040 0.98112 0.86436 0.98685 1.27037 0.91022 0.99806 1.01505 1.65317 1.13433 1.22318 1.16397 1.21654 0.97745 0.86581 1.02283 1.26941 0.95531 1.02833 1.13254 1.83821 1.08054 1.01282 1.69024 1.20602 0.94936 0.90048 1.01938 1.22350 0.95480 0.95579 1.02077 1.20833 0.91130 0.92908 1.03105 1.21643 1.02294 0.96090 0.93924 1.21882 0.98021 0.91491 0.95115 0.92698 0.95364 0.95686 0.93725 0.91346 0.92371 0.90558 0.89484 0.90650 0.90037 0.90432 0.89652 0.90044 0.89691 0.90584 0.92354 0.91264 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.41 27.37 -169.99 -4.65 16.75 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.20 6.69 56.52 0.38 -5.82 16 7 C -0.55 -15.19 8.28 -34.44 -0.29 -15.48 16 8 H 0.08 2.23 6.10 -52.48 -0.32 1.91 16 9 C 0.15 3.71 4.19 -4.98 -0.02 3.69 16 10 N -0.53 -11.17 4.86 -236.11 -1.15 -12.32 16 11 C 0.06 1.21 5.12 -3.84 -0.02 1.19 16 12 C -0.10 -1.61 5.35 -26.66 -0.14 -1.75 16 13 C -0.01 -0.16 2.69 -91.66 -0.25 -0.40 16 14 C 0.09 1.27 5.90 -13.74 -0.08 1.18 16 15 N -0.46 -7.12 10.51 -7.24 -0.08 -7.20 16 16 C 0.05 0.62 7.70 -82.45 -0.63 -0.01 16 17 C -0.26 -3.10 7.42 -35.34 -0.26 -3.37 16 18 S 0.12 1.48 23.17 -107.50 -2.49 -1.01 16 19 C -0.04 -0.28 6.80 -26.70 -0.18 -0.46 16 20 C -0.12 -0.75 7.12 -25.42 -0.18 -0.93 16 21 C -0.04 -0.36 6.81 -26.30 -0.18 -0.54 16 22 C -0.10 -1.62 5.35 -26.65 -0.14 -1.76 16 23 C 0.06 1.22 5.04 -3.83 -0.02 1.21 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.03 0.69 7.54 -51.93 -0.39 0.30 16 26 H 0.03 0.60 7.25 -51.93 -0.38 0.23 16 27 H 0.04 0.94 7.04 -51.93 -0.37 0.58 16 28 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.31 8.13 -51.93 -0.42 0.88 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 41 H 0.05 0.96 6.57 -51.93 -0.34 0.62 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -31.00 332.55 -11.52 -42.52 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.44 Total: -1.79 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.49 Total: -15.48 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.45 Total: -46.00 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.65 Total: 16.75 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.49 Total: -1.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.00 -11.52 -42.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932622726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.710 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds