Wall clock time and date at job start Tue Mar 31 2020 06:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48503 * 109.47098 * 270.00655 * 3 2 1 5 5 H 1.48503 * 109.47038 * 30.00113 * 3 2 1 6 6 H 1.48500 * 109.47298 * 150.00584 * 3 2 1 7 7 C 1.37883 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99425 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00325 * 179.97438 * 7 2 1 10 10 N 1.46895 * 109.47231 * 184.87876 * 9 7 2 11 11 C 1.46846 * 111.00096 * 64.56792 * 10 9 7 12 12 C 1.53032 * 109.51724 * 174.16824 * 11 10 9 13 13 C 1.53100 * 109.29412 * 59.18566 * 12 11 10 14 14 C 1.50701 * 109.52545 * 182.43923 * 13 12 11 15 15 N 1.28328 * 124.90693 * 59.37172 * 14 13 12 16 16 C 1.33482 * 117.84079 * 179.85058 * 15 14 13 17 17 C 1.33874 * 113.17935 * 0.40133 * 16 15 14 18 18 S 1.70747 * 124.89757 * 239.67576 * 14 13 12 19 19 C 1.51709 * 110.89484 * 179.82033 * 17 16 15 20 20 C 1.54301 * 104.80472 * 17.23075 * 19 17 16 21 21 C 1.52615 * 137.16016 * 180.02562 * 16 15 14 22 22 C 1.53117 * 109.15035 * 302.34035 * 13 12 11 23 23 C 1.46850 * 110.99999 * 300.36112 * 10 9 7 24 24 H 0.97008 * 120.00320 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46934 * 64.87889 * 9 7 2 26 26 H 1.08995 * 109.47204 * 304.88149 * 9 7 2 27 27 H 1.08997 * 109.46319 * 294.17642 * 11 10 9 28 28 H 1.09000 * 109.45826 * 54.15508 * 11 10 9 29 29 H 1.09005 * 109.50793 * 179.12083 * 12 11 10 30 30 H 1.09005 * 109.50472 * 299.23137 * 12 11 10 31 31 H 1.08992 * 109.52111 * 62.23833 * 13 12 11 32 32 H 1.08998 * 110.37767 * 136.06468 * 19 17 16 33 33 H 1.09001 * 110.37339 * 258.28979 * 19 17 16 34 34 H 1.09008 * 110.97114 * 91.92393 * 20 19 17 35 35 H 1.09007 * 110.97013 * 215.64765 * 20 19 17 36 36 H 1.09000 * 110.31667 * 44.04957 * 21 16 15 37 37 H 1.09002 * 110.31950 * 281.86101 * 21 16 15 38 38 H 1.09001 * 109.50579 * 297.70986 * 22 13 12 39 39 H 1.09005 * 109.50336 * 177.59175 * 22 13 12 40 40 H 1.09003 * 109.46357 * 305.85201 * 23 10 9 41 41 H 1.09005 * 109.46647 * 65.83192 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5740 -0.1194 11 6 3.6210 -3.1583 -1.4119 12 6 4.2683 -4.5371 -1.5598 13 6 3.8031 -5.4399 -0.4141 14 6 4.4838 -6.7802 -0.5208 15 7 5.7538 -6.9628 -0.4963 16 6 6.2056 -8.2146 -0.5990 17 6 5.2270 -9.1195 -0.7245 18 16 3.6767 -8.2742 -0.6990 19 6 5.7971 -10.5205 -0.8413 20 6 7.2482 -10.3994 -0.3310 21 6 7.5602 -8.9172 -0.6200 22 6 4.1681 -4.7854 0.9211 23 6 3.5236 -3.3994 0.9974 24 1 -0.4851 0.8401 0.0004 25 1 3.8752 -0.7580 0.9294 26 1 3.8745 -0.6062 -0.8441 27 1 2.5367 -3.2592 -1.4600 28 1 3.9615 -2.5088 -2.2182 29 1 3.9734 -4.9773 -2.5124 30 1 5.3530 -4.4354 -1.5256 31 1 2.7228 -5.5732 -0.4711 32 1 5.2322 -11.2133 -0.2177 33 1 5.7847 -10.8498 -1.8803 34 1 7.3049 -10.6091 0.7372 35 1 7.9148 -11.0553 -0.8911 36 1 8.2102 -8.5093 0.1541 37 1 8.0258 -8.8125 -1.6001 38 1 5.2513 -4.6876 0.9944 39 1 3.8016 -5.4028 1.7413 40 1 3.7933 -2.9249 1.9410 41 1 2.4398 -3.4992 0.9379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932622726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:30 Heat of formation + Delta-G solvation = 21.843324 kcal Electronic energy + Delta-G solvation = -20893.098335 eV Core-core repulsion = 17898.216532 eV Total energy + Delta-G solvation = -2994.881803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38943 -39.94001 -37.29159 -35.37150 -33.95912 -31.77882 -30.09811 -29.35834 -28.32866 -26.25528 -24.13721 -23.99591 -22.67932 -21.84520 -21.04704 -19.47484 -18.94100 -18.67249 -17.00569 -16.78413 -16.09244 -15.93125 -15.75795 -15.23191 -15.10586 -14.94134 -14.51154 -14.29609 -14.19210 -13.86547 -13.70015 -13.46103 -13.02774 -12.94957 -12.79549 -12.28676 -12.24137 -12.11572 -12.09342 -12.08898 -11.86500 -11.79931 -11.70954 -11.41791 -11.36613 -10.78372 -10.39797 -10.18136 -9.46458 -8.97996 -8.31315 -6.36230 -0.24132 0.25515 0.82472 1.36001 1.37536 1.49832 1.76426 2.34352 2.75864 3.04109 3.28186 3.57876 3.62443 3.85415 3.86356 4.01310 4.15317 4.31613 4.32118 4.54205 4.54920 4.62511 4.67037 4.72493 4.76977 4.79657 4.84142 4.89319 4.97918 5.01011 5.02550 5.12231 5.12762 5.17259 5.24259 5.28309 5.31059 5.39085 5.54938 6.10829 6.35401 6.43899 6.70538 6.79665 7.31069 8.84706 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.041902 B = 0.003192 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.065051 B = 8770.975710 C = 9075.737722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.012 3.988 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.550 4.550 8 H 0.038 0.962 9 C 0.160 3.840 10 N -0.532 5.532 11 C 0.066 3.934 12 C -0.086 4.086 13 C -0.007 4.007 14 C 0.062 3.938 15 N -0.485 5.485 16 C 0.016 3.984 17 C -0.258 4.258 18 S 0.134 5.866 19 C -0.037 4.037 20 C -0.104 4.104 21 C -0.041 4.041 22 C -0.086 4.086 23 C 0.067 3.933 24 H 0.266 0.734 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.018 0.982 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.206 -22.470 -1.937 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.589 4.589 8 H 0.057 0.943 9 C 0.033 3.967 10 N -0.256 5.256 11 C -0.063 4.063 12 C -0.125 4.125 13 C -0.030 4.030 14 C -0.218 4.218 15 N -0.199 5.199 16 C -0.114 4.114 17 C -0.379 4.379 18 S 0.393 5.607 19 C -0.077 4.077 20 C -0.143 4.143 21 C -0.081 4.081 22 C -0.126 4.126 23 C -0.062 4.062 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 13.825 -22.193 -1.934 26.219 hybrid contribution -0.650 1.164 0.008 1.333 sum 13.175 -21.029 -1.926 24.890 Atomic orbital electron populations 1.70070 1.08289 1.28140 1.52232 1.25898 0.95498 1.03349 0.93878 0.85700 0.79522 0.78471 0.79195 1.19204 1.21059 1.17067 1.21923 0.92637 0.93345 1.50960 0.94331 1.20039 0.91947 0.87841 0.96887 1.62407 1.58199 1.02676 1.02291 1.21885 0.97134 0.95243 0.92041 1.21477 1.01243 0.93002 0.96823 1.19876 0.98182 0.87259 0.97656 1.26661 0.91362 1.00104 1.03644 1.65298 1.13887 1.24186 1.16487 1.22326 0.99961 0.86005 1.03100 1.27567 0.94565 1.04719 1.11022 1.83701 1.08406 1.00111 1.68458 1.20845 0.95655 0.87865 1.03348 1.22391 0.94879 0.94132 1.02921 1.21025 0.89291 0.94089 1.03673 1.21484 1.01532 0.94260 0.95284 1.21876 0.96620 0.93185 0.94527 0.92531 0.95269 0.95188 0.96356 0.91217 0.90786 0.90950 0.89624 0.89257 0.88442 0.89888 0.86739 0.90065 0.88837 0.90983 0.90840 0.91391 0.96306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 2 C 0.01 0.68 5.47 84.66 0.46 1.15 16 3 Si 0.95 44.13 27.37 68.60 1.88 46.00 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.77 6.69 99.48 0.67 -10.11 16 7 C -0.55 -31.19 8.28 25.60 0.21 -30.98 16 8 H 0.04 2.42 6.10 -2.91 -0.02 2.40 16 9 C 0.16 7.73 4.19 85.56 0.36 8.09 16 10 N -0.53 -22.55 4.86 -900.93 -4.38 -26.92 16 11 C 0.07 2.57 5.12 86.32 0.44 3.01 16 12 C -0.09 -2.78 5.35 30.64 0.16 -2.61 16 13 C -0.01 -0.23 2.69 -11.47 -0.03 -0.26 16 14 C 0.06 1.77 5.90 88.62 0.52 2.29 16 15 N -0.49 -14.56 10.51 -176.81 -1.86 -16.42 16 16 C 0.02 0.39 7.70 41.93 0.32 0.71 16 17 C -0.26 -5.48 7.42 25.01 0.19 -5.30 16 18 S 0.13 3.19 23.17 -56.49 -1.31 1.88 16 19 C -0.04 -0.46 6.80 30.61 0.21 -0.25 16 20 C -0.10 -0.97 7.12 31.44 0.22 -0.74 16 21 C -0.04 -0.64 6.81 30.87 0.21 -0.43 16 22 C -0.09 -2.80 5.35 30.65 0.16 -2.63 16 23 C 0.07 2.63 5.04 86.33 0.43 3.06 16 24 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 25 H 0.03 1.41 7.54 -2.38 -0.02 1.39 16 26 H 0.03 1.42 7.25 -2.39 -0.02 1.40 16 27 H 0.02 0.81 7.04 -2.39 -0.02 0.79 16 28 H 0.07 2.67 8.08 -2.39 -0.02 2.65 16 29 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.09 2.64 8.13 -2.39 -0.02 2.62 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.07 2.66 8.12 -2.39 -0.02 2.64 16 41 H 0.02 0.84 6.57 -2.38 -0.02 0.82 16 Total: -1.00 -68.37 332.55 -0.52 -68.89 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.97 Total: 10.17 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 3.88 Total: -24.90 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -5.94 Total: -102.04 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.31 Total: 1.88 kcal Total: -68.37 -0.52 -68.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932622726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.730 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds