Wall clock time and date at job start Tue Mar 31 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30535 * 125.95793 * 2 1 4 4 N 1.39946 * 108.85208 * 180.28051 * 3 2 1 5 5 C 1.46504 * 125.79922 * 179.73586 * 4 3 2 6 6 C 1.34597 * 108.40694 * 359.71743 * 4 3 2 7 7 C 1.37859 * 107.40849 * 359.97438 * 6 4 3 8 8 C 1.47562 * 126.37810 * 179.97438 * 7 6 4 9 9 N 1.29142 * 125.86721 * 180.02562 * 8 7 6 10 10 O 1.41393 * 112.85905 * 180.29925 * 9 8 7 11 11 C 1.44202 * 107.59858 * 342.49941 * 10 9 8 12 12 H 1.09002 * 110.97156 * 143.53279 * 11 10 9 13 13 C 1.50702 * 110.97020 * 267.26399 * 11 10 9 14 14 O 1.21285 * 119.99668 * 0.50464 * 13 11 10 15 15 N 1.34774 * 119.99953 * 180.50614 * 13 11 10 16 16 C 1.46503 * 120.00048 * 179.97438 * 15 13 11 17 17 C 1.50698 * 109.47094 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00303 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99674 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00364 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99892 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47181 * 59.99923 * 21 19 17 23 23 H 1.48495 * 109.47248 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47010 * 299.99785 * 21 19 17 25 25 C 1.51690 * 125.87017 * 359.97438 * 8 7 6 26 26 H 1.09004 * 109.47329 * 270.19007 * 1 2 3 27 27 H 1.09001 * 109.47032 * 30.18469 * 1 2 3 28 28 H 1.08997 * 109.47230 * 150.18240 * 1 2 3 29 29 H 1.08998 * 109.47368 * 269.98186 * 5 4 3 30 30 H 1.09007 * 109.46711 * 29.97605 * 5 4 3 31 31 H 1.08991 * 109.47189 * 149.97686 * 5 4 3 32 32 H 1.08003 * 126.29694 * 179.97438 * 6 4 3 33 33 H 0.96994 * 120.00089 * 359.97438 * 15 13 11 34 34 H 1.08999 * 109.47275 * 299.99953 * 16 15 13 35 35 H 1.09007 * 109.46805 * 59.99503 * 16 15 13 36 36 H 0.96994 * 120.00037 * 180.02562 * 20 19 17 37 37 H 1.08996 * 110.79013 * 77.14888 * 25 8 7 38 38 H 1.08996 * 110.79187 * 313.68152 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0566 0.0000 4 7 3.6110 0.6450 -0.0065 5 6 4.7796 1.5286 -0.0141 6 6 3.6416 -0.7006 -0.0042 7 6 2.3359 -1.1428 0.0043 8 6 1.8881 -2.5489 0.0090 9 7 0.6613 -2.9522 0.0165 10 8 0.5465 -4.3614 0.0261 11 6 1.8160 -4.9051 -0.3887 12 1 2.0447 -5.8212 0.1559 13 6 1.8397 -5.1451 -1.8763 14 8 0.8686 -4.8731 -2.5500 15 7 2.9401 -5.6620 -2.4580 16 6 2.9630 -5.8958 -3.9041 17 6 4.2978 -6.4737 -4.2984 18 1 5.0533 -6.6497 -3.5470 19 6 4.5540 -6.7788 -5.6183 20 7 3.6339 -6.5650 -6.5333 21 14 6.2083 -7.4958 -6.1071 22 1 6.4209 -8.7810 -5.3940 23 1 6.2315 -7.7327 -7.5728 24 1 7.2877 -6.5432 -5.7430 25 6 2.7895 -3.7688 0.0048 26 1 -0.3634 0.0034 1.0277 27 1 -0.3633 0.8883 -0.5167 28 1 -0.3633 -0.8916 -0.5110 29 1 5.0641 1.7459 -1.0435 30 1 4.5351 2.4586 0.4993 31 1 5.6087 1.0389 0.4964 32 1 4.5264 -1.3200 -0.0082 33 1 3.7169 -5.8792 -1.9193 34 1 2.1707 -6.5949 -4.1717 35 1 2.8071 -4.9523 -4.4272 36 1 3.8140 -6.7800 -7.4618 37 1 3.2081 -3.9440 0.9958 38 1 3.5807 -3.6627 -0.7374 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:32 Heat of formation + Delta-G solvation = 57.855374 kcal Electronic energy + Delta-G solvation = -22736.799854 eV Core-core repulsion = 19197.186436 eV Total energy + Delta-G solvation = -3539.613418 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.50760 -40.24085 -37.98622 -34.58247 -34.25010 -33.02112 -32.46014 -30.83611 -30.27654 -29.25414 -27.31323 -25.92168 -24.43444 -22.50719 -22.27063 -20.39378 -19.93814 -19.27233 -17.76132 -17.06773 -16.31918 -15.93659 -15.81875 -15.36146 -15.03699 -14.74387 -14.27857 -14.10466 -13.89405 -13.64057 -13.43670 -13.05729 -12.85032 -12.63465 -12.44190 -12.28684 -12.21766 -12.08252 -11.92876 -11.60796 -11.05478 -10.99758 -10.89740 -10.51872 -10.39265 -10.21099 -9.50256 -9.46854 -8.97273 -8.78718 -8.28644 -7.96935 -6.20625 -4.28623 1.14850 1.86094 2.12472 2.88876 3.03736 3.21048 3.26049 3.27768 3.38162 3.84199 4.01135 4.14814 4.30254 4.46672 4.56540 4.61276 4.78398 4.82004 5.04649 5.06928 5.10610 5.15225 5.27752 5.36749 5.51730 5.59132 5.63184 5.80495 5.91850 5.96849 6.45953 6.59233 7.23606 7.32846 7.39663 7.46238 7.53146 7.61385 7.91557 8.51537 8.71349 8.99319 9.37911 10.89463 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.003806 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.650717 B = 7354.554230 C = 8415.524001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.119 3.881 3 N -0.301 5.301 4 N -0.365 5.365 5 C 0.099 3.901 6 C 0.101 3.899 7 C -0.193 4.193 8 C 0.164 3.836 9 N -0.285 5.285 10 O -0.170 6.170 11 C 0.025 3.975 12 H 0.135 0.865 13 C 0.481 3.519 14 O -0.529 6.529 15 N -0.708 5.708 16 C 0.251 3.749 17 C -0.546 4.546 18 H 0.063 0.937 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.138 4.138 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.390 0.610 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.267 0.733 37 H 0.111 0.889 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 12.775 17.046 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 N -0.123 5.123 4 N -0.143 5.143 5 C -0.042 4.042 6 C -0.052 4.052 7 C -0.206 4.206 8 C -0.026 4.026 9 N -0.027 5.027 10 O -0.188 6.188 11 C -0.038 4.038 12 H 0.152 0.848 13 C 0.264 3.736 14 O -0.405 6.405 15 N -0.358 5.358 16 C 0.130 3.870 17 C -0.584 4.584 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.201 1.201 25 C -0.177 4.177 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.203 0.797 33 H 0.222 0.778 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.096 14.457 16.377 22.064 hybrid contribution 2.388 -1.844 -0.280 3.031 sum 5.484 12.613 16.097 21.173 Atomic orbital electron populations 1.20360 0.85654 1.04324 1.03482 1.22570 0.97347 0.89000 0.95993 1.77210 0.85987 1.22544 1.26536 1.48277 1.06118 1.04645 1.55304 1.21973 0.83602 0.94573 1.04013 1.22895 0.98618 0.85119 0.98551 1.17863 0.91914 0.89444 1.21412 1.23184 0.91994 0.92690 0.94775 1.78405 1.18113 0.91957 1.14218 1.91293 1.30459 1.11526 1.85474 1.23666 0.85562 0.99269 0.95283 0.84764 1.20614 0.84375 0.79541 0.89065 1.90720 1.34485 1.51006 1.64326 1.46426 1.14836 1.62460 1.12119 1.19131 0.97533 0.97006 0.73316 1.21156 0.99271 1.44308 0.93653 0.91901 1.24956 0.97461 0.95332 0.96203 1.69965 1.33638 1.46638 1.01870 0.86469 0.83251 0.79535 0.77609 1.20014 1.21036 1.20096 1.22970 1.00101 0.89669 1.04999 0.90115 0.90793 0.88738 0.90144 0.88950 0.89031 0.79666 0.77755 0.95403 0.95526 0.92307 0.87106 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.03 36.01 0.36 -0.60 16 2 C 0.12 1.60 7.26 -82.03 -0.60 1.00 16 3 N -0.30 -3.91 12.51 33.89 0.42 -3.49 16 4 N -0.37 -3.64 3.99 -67.56 -0.27 -3.91 16 5 C 0.10 0.51 11.45 59.85 0.69 1.19 16 6 C 0.10 0.98 11.35 -16.48 -0.19 0.79 16 7 C -0.19 -2.50 6.12 -105.12 -0.64 -3.14 16 8 C 0.16 2.34 7.27 -79.43 -0.58 1.76 16 9 N -0.28 -4.88 10.71 35.29 0.38 -4.50 16 10 O -0.17 -3.10 11.82 -30.24 -0.36 -3.46 16 11 C 0.02 0.38 4.23 -26.98 -0.11 0.27 16 12 H 0.13 1.56 8.14 -51.93 -0.42 1.13 16 13 C 0.48 9.88 7.15 -10.99 -0.08 9.80 16 14 O -0.53 -13.68 16.58 -13.32 -0.22 -13.90 16 15 N -0.71 -14.43 5.50 -61.47 -0.34 -14.77 16 16 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 17 C -0.55 -14.42 9.28 -34.44 -0.32 -14.74 16 18 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.85 13.29 55.43 0.74 -25.11 16 21 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 C -0.14 -1.60 6.42 -26.49 -0.17 -1.77 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.31 6.70 -51.93 -0.35 0.96 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.42 8.14 -51.92 -0.42 -0.01 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.19 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.39 6.45 8.32 -40.82 -0.34 6.11 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.11 1.16 7.87 -51.93 -0.41 0.75 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -37.60 336.83 -6.22 -43.81 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.86 Total: 2.16 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.76 Total: 2.77 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.93 Total: -51.78 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.58 Total: -17.36 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.60 -6.22 -43.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.667 kcal (2) G-P(sol) polarization free energy of solvation -37.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds