Wall clock time and date at job start Tue Mar 31 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30535 * 125.95793 * 2 1 4 4 N 1.39946 * 108.85208 * 180.28051 * 3 2 1 5 5 C 1.46504 * 125.79922 * 179.73586 * 4 3 2 6 6 C 1.34597 * 108.40694 * 359.71743 * 4 3 2 7 7 C 1.37859 * 107.40849 * 359.97438 * 6 4 3 8 8 C 1.47562 * 126.37810 * 179.97438 * 7 6 4 9 9 N 1.29142 * 125.86721 * 180.02562 * 8 7 6 10 10 O 1.41393 * 112.85905 * 180.29925 * 9 8 7 11 11 C 1.44202 * 107.59858 * 342.49941 * 10 9 8 12 12 H 1.09002 * 110.97156 * 143.53279 * 11 10 9 13 13 C 1.50702 * 110.97020 * 267.26399 * 11 10 9 14 14 O 1.21285 * 119.99668 * 0.50464 * 13 11 10 15 15 N 1.34774 * 119.99953 * 180.50614 * 13 11 10 16 16 C 1.46503 * 120.00048 * 179.97438 * 15 13 11 17 17 C 1.50698 * 109.47094 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00303 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99674 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00364 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99892 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47181 * 59.99923 * 21 19 17 23 23 H 1.48495 * 109.47248 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47010 * 299.99785 * 21 19 17 25 25 C 1.51690 * 125.87017 * 359.97438 * 8 7 6 26 26 H 1.09004 * 109.47329 * 270.19007 * 1 2 3 27 27 H 1.09001 * 109.47032 * 30.18469 * 1 2 3 28 28 H 1.08997 * 109.47230 * 150.18240 * 1 2 3 29 29 H 1.08998 * 109.47368 * 269.98186 * 5 4 3 30 30 H 1.09007 * 109.46711 * 29.97605 * 5 4 3 31 31 H 1.08991 * 109.47189 * 149.97686 * 5 4 3 32 32 H 1.08003 * 126.29694 * 179.97438 * 6 4 3 33 33 H 0.96994 * 120.00089 * 359.97438 * 15 13 11 34 34 H 1.08999 * 109.47275 * 299.99953 * 16 15 13 35 35 H 1.09007 * 109.46805 * 59.99503 * 16 15 13 36 36 H 0.96994 * 120.00037 * 180.02562 * 20 19 17 37 37 H 1.08996 * 110.79013 * 77.14888 * 25 8 7 38 38 H 1.08996 * 110.79187 * 313.68152 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0566 0.0000 4 7 3.6110 0.6450 -0.0065 5 6 4.7796 1.5286 -0.0141 6 6 3.6416 -0.7006 -0.0042 7 6 2.3359 -1.1428 0.0043 8 6 1.8881 -2.5489 0.0090 9 7 0.6613 -2.9522 0.0165 10 8 0.5465 -4.3614 0.0261 11 6 1.8160 -4.9051 -0.3887 12 1 2.0447 -5.8212 0.1559 13 6 1.8397 -5.1451 -1.8763 14 8 0.8686 -4.8731 -2.5500 15 7 2.9401 -5.6620 -2.4580 16 6 2.9630 -5.8958 -3.9041 17 6 4.2978 -6.4737 -4.2984 18 1 5.0533 -6.6497 -3.5470 19 6 4.5540 -6.7788 -5.6183 20 7 3.6339 -6.5650 -6.5333 21 14 6.2083 -7.4958 -6.1071 22 1 6.4209 -8.7810 -5.3940 23 1 6.2315 -7.7327 -7.5728 24 1 7.2877 -6.5432 -5.7430 25 6 2.7895 -3.7688 0.0048 26 1 -0.3634 0.0034 1.0277 27 1 -0.3633 0.8883 -0.5167 28 1 -0.3633 -0.8916 -0.5110 29 1 5.0641 1.7459 -1.0435 30 1 4.5351 2.4586 0.4993 31 1 5.6087 1.0389 0.4964 32 1 4.5264 -1.3200 -0.0082 33 1 3.7169 -5.8792 -1.9193 34 1 2.1707 -6.5949 -4.1717 35 1 2.8071 -4.9523 -4.4272 36 1 3.8140 -6.7800 -7.4618 37 1 3.2081 -3.9440 0.9958 38 1 3.5807 -3.6627 -0.7374 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935694409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:32 Heat of formation + Delta-G solvation = 29.179633 kcal Electronic energy + Delta-G solvation = -22738.043327 eV Core-core repulsion = 19197.186436 eV Total energy + Delta-G solvation = -3540.856891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.36998 -41.51933 -39.56522 -36.22047 -35.38687 -34.46840 -34.00612 -32.07074 -31.12420 -30.13783 -29.21790 -26.66584 -25.89848 -24.16684 -23.28111 -21.64481 -21.18196 -20.32336 -19.29329 -18.06522 -17.94486 -17.13968 -16.93631 -16.67183 -16.35194 -16.32955 -15.70185 -15.34066 -14.97173 -14.55248 -14.40923 -14.20336 -14.13794 -13.98323 -13.91063 -13.37410 -13.23521 -13.12063 -13.02741 -12.95659 -12.91748 -12.65403 -12.23794 -11.96384 -11.65880 -11.51885 -11.34030 -10.79299 -10.48655 -10.31254 -9.91142 -9.28475 -8.28017 -6.45761 0.27206 0.93426 1.45015 1.45747 1.49401 1.55369 1.57706 1.92775 2.15829 2.29512 2.47688 3.03016 3.07184 3.29503 3.45529 3.73668 3.79630 3.91154 4.10048 4.17679 4.39820 4.46644 4.50786 4.56728 4.67772 4.70799 4.74527 4.89467 4.94616 5.00569 5.09649 5.20514 5.44369 5.51529 5.65336 5.82705 5.93315 6.40913 6.58046 6.64416 6.83064 7.23027 7.42015 8.84146 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.003806 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.650717 B = 7354.554230 C = 8415.524001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.098 3.902 3 N -0.329 5.329 4 N -0.361 5.361 5 C 0.088 3.912 6 C 0.128 3.872 7 C -0.234 4.234 8 C 0.174 3.826 9 N -0.333 5.333 10 O -0.204 6.204 11 C 0.030 3.970 12 H 0.179 0.821 13 C 0.476 3.524 14 O -0.594 6.594 15 N -0.693 5.693 16 C 0.267 3.733 17 C -0.553 4.553 18 H 0.092 0.908 19 C 0.002 3.998 20 N -0.934 5.934 21 Si 0.987 3.013 22 H -0.261 1.261 23 H -0.290 1.290 24 H -0.257 1.257 25 C -0.126 4.126 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.235 0.765 33 H 0.414 0.586 34 H -0.017 1.017 35 H -0.016 1.016 36 H 0.268 0.732 37 H 0.165 0.835 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.456 12.710 19.172 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 N -0.152 5.152 4 N -0.139 5.139 5 C -0.051 4.051 6 C -0.026 4.026 7 C -0.248 4.248 8 C -0.015 4.015 9 N -0.079 5.079 10 O -0.218 6.218 11 C -0.033 4.033 12 H 0.196 0.804 13 C 0.262 3.738 14 O -0.474 6.474 15 N -0.345 5.345 16 C 0.144 3.856 17 C -0.591 4.591 18 H 0.110 0.890 19 C -0.197 4.197 20 N -0.573 5.573 21 Si 0.810 3.190 22 H -0.185 1.185 23 H -0.216 1.216 24 H -0.182 1.182 25 C -0.165 4.165 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.148 0.852 32 H 0.251 0.749 33 H 0.251 0.749 34 H 0.001 0.999 35 H 0.002 0.998 36 H 0.077 0.923 37 H 0.183 0.817 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.655 14.401 18.571 24.716 hybrid contribution 1.018 -1.668 -0.938 2.168 sum 8.674 12.733 17.633 23.416 Atomic orbital electron populations 1.20284 0.85958 1.03378 1.03871 1.22754 0.97793 0.89812 0.96500 1.77143 0.87710 1.22856 1.27514 1.48747 1.06060 1.05582 1.53501 1.22426 0.82820 0.94676 1.05202 1.23587 0.98771 0.85240 0.94980 1.18096 0.93433 0.88677 1.24544 1.23684 0.91972 0.94153 0.91697 1.78466 1.20062 0.91142 1.18191 1.91264 1.32298 1.12761 1.85515 1.23852 0.86169 1.02519 0.90717 0.80374 1.21789 0.82882 0.77483 0.91633 1.90690 1.36796 1.53380 1.66567 1.46058 1.16141 1.62332 1.09962 1.18556 0.96758 0.93781 0.76517 1.21582 0.99369 1.43610 0.94528 0.89000 1.26118 1.01886 0.95520 0.96206 1.70154 1.36536 1.48233 1.02373 0.85178 0.77815 0.79261 0.76786 1.18527 1.21602 1.18158 1.23111 0.98757 0.86343 1.08239 0.89122 0.90154 0.91096 0.89352 0.88577 0.85243 0.74893 0.74933 0.99888 0.99790 0.92330 0.81722 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 10.03 71.24 0.71 -1.24 16 2 C 0.10 2.65 7.26 43.47 0.32 2.97 16 3 N -0.33 -8.28 12.51 -46.70 -0.58 -8.86 16 4 N -0.36 -6.17 3.99 -367.66 -1.47 -7.63 16 5 C 0.09 0.57 11.45 127.77 1.46 2.04 16 6 C 0.13 2.01 11.35 84.18 0.96 2.97 16 7 C -0.23 -5.70 6.12 -20.19 -0.12 -5.83 16 8 C 0.17 4.75 7.27 45.73 0.33 5.08 16 9 N -0.33 -11.65 10.71 -42.26 -0.45 -12.11 16 10 O -0.20 -7.49 11.82 -20.28 -0.24 -7.73 16 11 C 0.03 0.85 4.23 30.44 0.13 0.97 16 12 H 0.18 3.45 8.14 -2.39 -0.02 3.43 16 13 C 0.48 19.71 7.15 87.66 0.63 20.33 16 14 O -0.59 -32.46 16.58 15.00 0.25 -32.21 16 15 N -0.69 -27.92 5.50 -466.78 -2.57 -30.49 16 16 C 0.27 14.47 5.43 85.63 0.46 14.93 16 17 C -0.55 -28.89 9.28 25.60 0.24 -28.65 16 18 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 19 C 0.00 0.12 5.46 84.65 0.46 0.58 16 20 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 21 Si 0.99 40.72 29.54 68.60 2.03 42.75 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 25 C -0.13 -2.44 6.42 30.75 0.20 -2.25 16 26 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 2.15 6.70 -2.39 -0.02 2.13 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.23 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.41 12.53 8.32 -92.71 -0.77 11.75 16 34 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 35 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 36 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.17 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.12 2.07 7.87 -2.39 -0.02 2.05 16 Total: -1.00 -90.32 336.83 3.34 -86.97 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.32 Total: 13.25 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 5.77 Total: 11.91 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -4.79 Total: -114.94 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: 0.01 Total: -39.94 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -90.32 3.34 -86.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.154 kcal (2) G-P(sol) polarization free energy of solvation -90.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds