Wall clock time and date at job start Tue Mar 31 2020 07:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48493 * 109.47397 * 269.99910 * 3 2 1 5 5 H 1.48510 * 109.46813 * 29.99739 * 3 2 1 6 6 H 1.48495 * 109.47179 * 149.99357 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.88555 * 31.12292 * 10 9 7 12 12 C 1.55150 * 111.00377 * 267.19861 * 10 9 7 13 13 C 1.54330 * 102.94047 * 206.42771 * 12 10 9 14 14 N 1.47017 * 107.27078 * 22.18877 * 13 12 10 15 15 C 1.34780 * 125.64788 * 181.02366 * 14 13 12 16 16 O 1.21279 * 120.00302 * 180.02562 * 15 14 13 17 17 C 1.50696 * 119.99942 * 0.04726 * 15 14 13 18 18 H 1.09005 * 109.47310 * 344.99590 * 17 15 14 19 19 F 1.39898 * 109.47397 * 104.99791 * 17 15 14 20 20 C 1.50707 * 109.47323 * 224.99938 * 17 15 14 21 21 C 1.38232 * 119.99794 * 294.72919 * 20 17 15 22 22 C 1.38234 * 120.00246 * 179.78990 * 21 20 17 23 23 C 1.38237 * 119.99514 * 0.43170 * 22 21 20 24 24 C 1.38235 * 120.00205 * 359.81979 * 23 22 21 25 25 C 1.38233 * 119.99846 * 114.99809 * 20 17 15 26 26 C 1.47420 * 108.70382 * 1.06412 * 14 13 12 27 27 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 29 29 H 1.08999 * 110.72214 * 324.78437 * 12 10 9 30 30 H 1.08995 * 110.72248 * 88.06590 * 12 10 9 31 31 H 1.09004 * 109.88181 * 262.77550 * 13 12 10 32 32 H 1.09002 * 110.01208 * 141.68624 * 13 12 10 33 33 H 1.07999 * 120.00126 * 359.97438 * 21 20 17 34 34 H 1.07998 * 120.00326 * 180.27489 * 22 21 20 35 35 H 1.08002 * 119.99883 * 179.83307 * 23 22 21 36 36 H 1.07999 * 120.00061 * 179.97438 * 24 23 22 37 37 H 1.08001 * 120.00407 * 359.97438 * 25 20 17 38 38 H 1.08997 * 110.36864 * 217.02567 * 26 14 13 39 39 H 1.08999 * 110.36847 * 94.70954 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0074 -3.5574 0.5269 12 6 2.2749 -4.1738 -1.4461 13 6 2.3933 -5.7004 -1.2535 14 7 1.7390 -6.0316 0.0207 15 6 1.6459 -7.2637 0.5589 16 8 1.0804 -7.4208 1.6203 17 6 2.2449 -8.4463 -0.1578 18 1 2.4665 -8.1720 -1.1892 19 9 3.4254 -8.8327 0.4859 20 6 1.2659 -9.5920 -0.1420 21 6 0.9173 -10.1867 1.0561 22 6 0.0161 -11.2347 1.0712 23 6 -0.5297 -11.6939 -0.1130 24 6 -0.1771 -11.1026 -1.3117 25 6 0.7210 -10.0517 -1.3263 26 6 1.2007 -4.7929 0.6117 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0039 29 1 1.4188 -3.9298 -2.0752 30 1 3.1935 -3.7659 -1.8679 31 1 3.4438 -5.9890 -1.2167 32 1 1.8949 -6.2195 -2.0722 33 1 1.3467 -9.8306 1.9809 34 1 -0.2597 -11.6965 2.0077 35 1 -1.2318 -12.5145 -0.1016 36 1 -0.6032 -11.4616 -2.2369 37 1 0.9964 -9.5897 -2.2628 38 1 1.3114 -4.8106 1.6959 39 1 0.1530 -4.6664 0.3386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970107672.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:05 Heat of formation + Delta-G solvation = -37.365828 kcal Electronic energy + Delta-G solvation = -22743.040158 eV Core-core repulsion = 19179.377678 eV Total energy + Delta-G solvation = -3563.662481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.07325 -40.03891 -39.11434 -37.35405 -34.25035 -32.66758 -31.57634 -31.11342 -29.67196 -28.55235 -26.77756 -23.85196 -23.00753 -22.82313 -21.83497 -20.20488 -19.41267 -17.70015 -17.44510 -17.35251 -16.61464 -16.12703 -15.70634 -15.40751 -14.71650 -14.50285 -14.41844 -14.06796 -13.62432 -13.53560 -13.33710 -13.17861 -12.94432 -12.67960 -12.46935 -12.18243 -12.05925 -11.71854 -11.33931 -11.23713 -11.16408 -10.89004 -10.76089 -10.36267 -10.12725 -9.86972 -9.78439 -9.11884 -9.08718 -9.01629 -8.57564 -7.11287 -5.87214 -3.18303 0.97900 1.20234 2.41834 2.81999 3.38139 3.43878 3.45475 3.54663 4.10176 4.18265 4.35032 4.50280 4.72757 4.78402 4.90504 4.93117 5.04172 5.16599 5.23601 5.26781 5.41029 5.47704 5.52005 5.64445 5.67335 5.83443 5.87933 6.06297 6.13057 6.17633 6.27081 6.29061 6.30212 6.41429 6.52958 6.73149 6.81808 7.48769 7.60944 8.00856 8.29872 9.41742 9.94588 10.29552 11.34841 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.034657 B = 0.002984 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.719955 B = 9380.180092 C = 9502.090033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.713 5.713 10 C 0.172 3.828 11 H 0.069 0.931 12 C -0.155 4.155 13 C 0.093 3.907 14 N -0.604 5.604 15 C 0.509 3.491 16 O -0.521 6.521 17 C 0.131 3.869 18 H 0.107 0.893 19 F -0.184 7.184 20 C -0.126 4.126 21 C -0.068 4.068 22 C -0.126 4.126 23 C -0.107 4.107 24 C -0.128 4.128 25 C -0.096 4.096 26 C 0.096 3.904 27 H 0.257 0.743 28 H 0.387 0.613 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -22.072 -4.396 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.060 3.940 11 H 0.087 0.913 12 C -0.196 4.196 13 C -0.030 4.030 14 N -0.338 5.338 15 C 0.294 3.706 16 O -0.396 6.396 17 C 0.091 3.909 18 H 0.124 0.876 19 F -0.164 7.164 20 C -0.127 4.127 21 C -0.086 4.086 22 C -0.144 4.144 23 C -0.125 4.125 24 C -0.146 4.146 25 C -0.114 4.114 26 C -0.027 4.027 27 H 0.067 0.933 28 H 0.221 0.779 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.232 -22.043 -3.742 22.470 hybrid contribution 0.198 0.936 -0.154 0.969 sum 2.429 -21.107 -3.896 21.601 Atomic orbital electron populations 1.69661 1.05179 1.25977 1.56868 1.24782 0.95540 0.97865 1.02376 0.86159 0.78692 0.83562 0.77558 1.21595 1.21682 1.20640 1.19225 0.91080 0.83736 1.43753 0.90902 1.42261 1.05850 0.99300 1.87879 1.21300 0.94880 0.85656 0.92184 0.91329 1.23438 1.03149 0.90913 1.02099 1.22249 0.97046 0.98752 0.84928 1.48479 1.55549 1.06647 1.23089 1.20284 0.81272 0.83094 0.85994 1.90715 1.42870 1.84189 1.21842 1.20263 0.81579 0.91736 0.97305 0.87555 1.92906 1.47482 1.92016 1.84016 1.19761 1.00281 0.97801 0.94888 1.21129 0.95591 0.94028 0.97814 1.21192 0.97529 0.97227 0.98442 1.21259 0.99114 0.99497 0.92678 1.21089 0.98404 0.96781 0.98308 1.20993 0.96780 0.96643 0.96982 1.22691 0.98530 0.82407 0.99029 0.93293 0.77898 0.90399 0.90401 0.91447 0.91712 0.84983 0.85637 0.85853 0.85631 0.85595 0.90311 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.24 13.06 55.49 0.72 -26.51 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.55 9.96 -15.06 -0.15 -6.70 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -16.96 5.24 -51.35 -0.27 -17.23 16 10 C 0.17 3.22 3.71 -65.78 -0.24 2.98 16 11 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 12 C -0.15 -2.37 6.65 -24.90 -0.17 -2.53 16 13 C 0.09 1.15 5.90 -3.06 -0.02 1.14 16 14 N -0.60 -9.14 3.33 -170.53 -0.57 -9.71 16 15 C 0.51 7.94 7.18 -10.99 -0.08 7.86 16 16 O -0.52 -9.76 15.47 5.56 0.09 -9.68 16 17 C 0.13 1.62 3.78 -29.03 -0.11 1.51 16 18 H 0.11 0.99 6.47 -51.93 -0.34 0.66 16 19 F -0.18 -2.51 16.91 2.25 0.04 -2.47 16 20 C -0.13 -1.53 5.00 -104.62 -0.52 -2.05 16 21 C -0.07 -0.84 8.56 -39.59 -0.34 -1.18 16 22 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 23 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 24 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.10 -0.95 9.67 -39.58 -0.38 -1.33 16 26 C 0.10 1.68 6.55 -2.53 -0.02 1.66 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.39 9.82 7.76 -40.82 -0.32 9.51 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.65 7.91 -51.93 -0.41 0.24 16 33 H 0.13 1.77 7.43 -52.49 -0.39 1.38 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.13 0.93 7.95 -52.49 -0.42 0.51 16 38 H 0.08 1.45 8.04 -51.93 -0.42 1.04 16 39 H 0.07 1.28 8.00 -51.93 -0.42 0.87 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -31.44 333.90 -8.50 -39.95 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.21 Total: 7.52 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -3.32 Total: -3.59 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.11 Total: -53.45 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.44 -8.50 -39.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970107672.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.581 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds