Wall clock time and date at job start Tue Mar 31 2020 07:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48493 * 109.47397 * 269.99910 * 3 2 1 5 5 H 1.48510 * 109.46813 * 29.99739 * 3 2 1 6 6 H 1.48495 * 109.47179 * 149.99357 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.88555 * 31.12292 * 10 9 7 12 12 C 1.55150 * 111.00377 * 267.19861 * 10 9 7 13 13 C 1.54330 * 102.94047 * 206.42771 * 12 10 9 14 14 N 1.47017 * 107.27078 * 22.18877 * 13 12 10 15 15 C 1.34780 * 125.64788 * 181.02366 * 14 13 12 16 16 O 1.21279 * 120.00302 * 180.02562 * 15 14 13 17 17 C 1.50696 * 119.99942 * 0.04726 * 15 14 13 18 18 H 1.09005 * 109.47310 * 344.99590 * 17 15 14 19 19 F 1.39898 * 109.47397 * 104.99791 * 17 15 14 20 20 C 1.50707 * 109.47323 * 224.99938 * 17 15 14 21 21 C 1.38232 * 119.99794 * 294.72919 * 20 17 15 22 22 C 1.38234 * 120.00246 * 179.78990 * 21 20 17 23 23 C 1.38237 * 119.99514 * 0.43170 * 22 21 20 24 24 C 1.38235 * 120.00205 * 359.81979 * 23 22 21 25 25 C 1.38233 * 119.99846 * 114.99809 * 20 17 15 26 26 C 1.47420 * 108.70382 * 1.06412 * 14 13 12 27 27 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 29 29 H 1.08999 * 110.72214 * 324.78437 * 12 10 9 30 30 H 1.08995 * 110.72248 * 88.06590 * 12 10 9 31 31 H 1.09004 * 109.88181 * 262.77550 * 13 12 10 32 32 H 1.09002 * 110.01208 * 141.68624 * 13 12 10 33 33 H 1.07999 * 120.00126 * 359.97438 * 21 20 17 34 34 H 1.07998 * 120.00326 * 180.27489 * 22 21 20 35 35 H 1.08002 * 119.99883 * 179.83307 * 23 22 21 36 36 H 1.07999 * 120.00061 * 179.97438 * 24 23 22 37 37 H 1.08001 * 120.00407 * 359.97438 * 25 20 17 38 38 H 1.08997 * 110.36864 * 217.02567 * 26 14 13 39 39 H 1.08999 * 110.36847 * 94.70954 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0074 -3.5574 0.5269 12 6 2.2749 -4.1738 -1.4461 13 6 2.3933 -5.7004 -1.2535 14 7 1.7390 -6.0316 0.0207 15 6 1.6459 -7.2637 0.5589 16 8 1.0804 -7.4208 1.6203 17 6 2.2449 -8.4463 -0.1578 18 1 2.4665 -8.1720 -1.1892 19 9 3.4254 -8.8327 0.4859 20 6 1.2659 -9.5920 -0.1420 21 6 0.9173 -10.1867 1.0561 22 6 0.0161 -11.2347 1.0712 23 6 -0.5297 -11.6939 -0.1130 24 6 -0.1771 -11.1026 -1.3117 25 6 0.7210 -10.0517 -1.3263 26 6 1.2007 -4.7929 0.6117 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0039 29 1 1.4188 -3.9298 -2.0752 30 1 3.1935 -3.7659 -1.8679 31 1 3.4438 -5.9890 -1.2167 32 1 1.8949 -6.2195 -2.0722 33 1 1.3467 -9.8306 1.9809 34 1 -0.2597 -11.6965 2.0077 35 1 -1.2318 -12.5145 -0.1016 36 1 -0.6032 -11.4616 -2.2369 37 1 0.9964 -9.5897 -2.2628 38 1 1.3114 -4.8106 1.6959 39 1 0.1530 -4.6664 0.3386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970107672.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:05 Heat of formation + Delta-G solvation = -56.422918 kcal Electronic energy + Delta-G solvation = -22743.866536 eV Core-core repulsion = 19179.377678 eV Total energy + Delta-G solvation = -3564.488858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.08350 -41.21682 -39.97180 -38.69869 -36.00235 -33.72277 -33.13139 -31.84954 -31.12928 -29.86108 -27.96977 -25.61782 -24.31267 -23.59529 -22.71586 -21.68565 -20.54320 -19.35050 -18.80394 -18.23200 -17.78388 -17.12631 -16.95793 -16.49889 -16.20881 -15.70218 -15.46299 -15.29405 -15.00772 -14.69826 -14.58304 -14.34807 -14.19488 -13.68792 -13.55669 -13.41612 -13.21030 -13.09415 -13.00148 -12.68554 -12.38823 -12.15419 -12.07548 -11.95036 -11.75504 -11.63554 -11.02263 -10.95568 -9.88333 -9.86715 -9.81723 -9.06757 -7.96233 -5.26565 0.20197 0.45506 1.22451 1.49270 1.50704 1.58752 1.65354 2.55991 2.77033 3.11143 3.23766 3.37089 3.51586 3.66489 3.83651 3.96835 4.01043 4.12095 4.19515 4.23155 4.26442 4.29693 4.46908 4.55614 4.64322 4.66999 4.78253 4.92731 4.95409 5.06507 5.11060 5.23646 5.40311 5.46383 5.52192 5.52942 5.55914 6.01828 6.24384 6.29550 6.79948 7.31504 8.02123 8.26268 9.26978 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.034657 B = 0.002984 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.719955 B = 9380.180092 C = 9502.090033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.269 1.269 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.728 5.728 10 C 0.165 3.835 11 H 0.064 0.936 12 C -0.143 4.143 13 C 0.096 3.904 14 N -0.603 5.603 15 C 0.502 3.498 16 O -0.563 6.563 17 C 0.139 3.861 18 H 0.147 0.853 19 F -0.193 7.193 20 C -0.149 4.149 21 C -0.097 4.097 22 C -0.138 4.138 23 C -0.107 4.107 24 C -0.128 4.128 25 C -0.097 4.097 26 C 0.105 3.895 27 H 0.251 0.749 28 H 0.375 0.625 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.058 0.942 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.395 -23.792 -6.815 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.367 5.367 10 C 0.055 3.945 11 H 0.082 0.918 12 C -0.183 4.183 13 C -0.026 4.026 14 N -0.336 5.336 15 C 0.289 3.711 16 O -0.441 6.441 17 C 0.100 3.900 18 H 0.164 0.836 19 F -0.174 7.174 20 C -0.150 4.150 21 C -0.115 4.115 22 C -0.156 4.156 23 C -0.125 4.125 24 C -0.146 4.146 25 C -0.115 4.115 26 C -0.019 4.019 27 H 0.060 0.940 28 H 0.207 0.793 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.155 0.845 35 H 0.169 0.831 36 H 0.175 0.825 37 H 0.174 0.826 38 H 0.077 0.923 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.287 -23.812 -6.187 24.821 hybrid contribution -0.124 1.352 0.634 1.498 sum 3.163 -22.460 -5.553 23.351 Atomic orbital electron populations 1.69817 1.06686 1.26176 1.59215 1.25572 0.96327 1.01147 1.03490 0.85141 0.77659 0.79441 0.77500 1.21131 1.22604 1.19430 1.19616 0.91589 0.84722 1.41397 0.90087 1.42398 1.05467 1.00497 1.88337 1.21457 0.94149 0.84140 0.94800 0.91763 1.23214 1.03302 0.93088 0.98735 1.22449 0.99017 0.96654 0.84469 1.48537 1.55379 1.05762 1.23900 1.21019 0.80642 0.83795 0.85632 1.90696 1.44681 1.84865 1.23856 1.20373 0.81126 0.90274 0.98229 0.83554 1.92886 1.48007 1.91984 1.84505 1.19894 1.01244 0.98244 0.95645 1.21133 0.97227 0.95682 0.97459 1.21419 0.97299 0.96899 0.99958 1.21647 0.98860 0.99839 0.92171 1.21540 0.97577 0.96023 0.99455 1.21360 0.96249 0.96727 0.97147 1.22354 0.97983 0.83575 0.97983 0.93973 0.79304 0.91336 0.89246 0.88639 0.87992 0.87503 0.84482 0.83100 0.82539 0.82629 0.92299 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.08 13.06 21.65 0.28 -57.79 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.97 44.87 29.55 68.60 2.03 46.90 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.24 -12.83 9.96 84.03 0.84 -11.99 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -35.08 5.24 -316.38 -1.66 -36.74 16 10 C 0.16 6.11 3.71 46.38 0.17 6.28 16 11 H 0.06 2.43 8.09 -2.39 -0.02 2.41 16 12 C -0.14 -4.05 6.65 31.78 0.21 -3.84 16 13 C 0.10 2.02 5.90 86.73 0.51 2.53 16 14 N -0.60 -17.41 3.33 -811.81 -2.70 -20.11 16 15 C 0.50 15.35 7.18 87.66 0.63 15.98 16 16 O -0.56 -21.82 15.47 -3.03 -0.05 -21.87 16 17 C 0.14 3.16 3.78 29.10 0.11 3.27 16 18 H 0.15 2.08 6.47 -2.38 -0.02 2.07 16 19 F -0.19 -5.06 16.91 44.97 0.76 -4.30 16 20 C -0.15 -3.40 5.00 -19.86 -0.10 -3.50 16 21 C -0.10 -2.45 8.56 22.27 0.19 -2.26 16 22 C -0.14 -2.75 10.05 22.27 0.22 -2.53 16 23 C -0.11 -1.65 10.05 22.27 0.22 -1.43 16 24 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 25 C -0.10 -1.59 9.67 22.27 0.22 -1.38 16 26 C 0.11 3.71 6.55 86.86 0.57 4.28 16 27 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.37 19.63 7.76 -92.71 -0.72 18.91 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.10 1.50 7.91 -2.39 -0.02 1.49 16 33 H 0.11 3.12 7.43 -2.91 -0.02 3.10 16 34 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 36 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.16 1.53 7.95 -2.91 -0.02 1.50 16 38 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 39 H 0.06 2.30 8.00 -2.39 -0.02 2.28 16 Total: -1.00 -70.91 333.90 3.49 -67.41 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.34 Total: 26.26 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 4.49 Total: 0.25 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.08 Total: -114.65 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.76 Total: -4.30 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.91 3.49 -67.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970107672.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.989 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds