Wall clock time and date at job start Tue Mar 31 2020 06:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.64472 * 36.68318 * 10 9 7 12 12 C 1.55163 * 110.71993 * 273.54103 * 10 9 7 13 13 C 1.54904 * 101.58089 * 206.13410 * 12 10 9 14 14 N 1.47422 * 104.83588 * 37.01349 * 13 12 10 15 15 C 1.34774 * 125.65574 * 155.83543 * 14 13 12 16 16 O 1.21276 * 120.00443 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99540 * 0.02562 * 15 14 13 18 18 C 1.50698 * 109.47177 * 180.02562 * 17 15 14 19 19 C 1.38215 * 120.01573 * 99.99727 * 18 17 15 20 20 C 1.38218 * 120.02556 * 179.97438 * 19 18 17 21 21 C 1.38271 * 120.05523 * 0.02562 * 20 19 18 22 22 C 1.38173 * 120.02203 * 0.02562 * 21 20 19 23 23 C 1.38443 * 120.01238 * 279.72404 * 18 17 15 24 24 F 1.35106 * 120.02321 * 359.97438 * 23 18 17 25 25 C 1.47030 * 108.69904 * 335.86406 * 14 13 12 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.08994 * 111.00262 * 324.21376 * 12 10 9 29 29 H 1.09004 * 111.00356 * 88.06197 * 12 10 9 30 30 H 1.09000 * 110.36524 * 155.84807 * 13 12 10 31 31 H 1.09002 * 110.36909 * 278.16619 * 13 12 10 32 32 H 1.08997 * 109.47360 * 300.00395 * 17 15 14 33 33 H 1.08997 * 109.47261 * 60.00088 * 17 15 14 34 34 H 1.08003 * 119.98607 * 0.02562 * 19 18 17 35 35 H 1.08008 * 119.97014 * 180.02562 * 20 19 18 36 36 H 1.07995 * 119.98686 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.01071 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.88565 * 241.64209 * 25 14 13 39 39 H 1.08999 * 109.87582 * 120.47963 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9581 -3.5809 0.6085 12 6 2.4112 -4.0867 -1.4500 13 6 2.5152 -5.6251 -1.3011 14 7 1.4566 -5.9837 -0.3398 15 6 0.8624 -7.1892 -0.2390 16 8 -0.0012 -7.3720 0.5925 17 6 1.2713 -8.3100 -1.1598 18 6 0.4614 -9.5409 -0.8433 19 6 -0.6299 -9.8702 -1.6249 20 6 -1.3726 -10.9993 -1.3352 21 6 -1.0252 -11.8004 -0.2631 22 6 0.0647 -11.4726 0.5203 23 6 0.8136 -10.3453 0.2270 24 9 1.8837 -10.0276 0.9880 25 6 1.1558 -4.8081 0.4904 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 1.6157 -3.8141 -2.1434 29 1 3.3638 -3.6593 -1.7632 30 1 2.3375 -6.1119 -2.2601 31 1 3.4936 -5.9031 -0.9093 32 1 1.0933 -8.0143 -2.1936 33 1 2.3306 -8.5261 -1.0210 34 1 -0.9019 -9.2455 -2.4629 35 1 -2.2250 -11.2561 -1.9469 36 1 -1.6065 -12.6822 -0.0375 37 1 0.3356 -12.0982 1.3579 38 1 1.3719 -5.0276 1.5360 39 1 0.1075 -4.5323 0.3764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970621798.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:32 Heat of formation + Delta-G solvation = -60.917689 kcal Electronic energy + Delta-G solvation = -22658.540892 eV Core-core repulsion = 19093.857126 eV Total energy + Delta-G solvation = -3564.683766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.94282 -41.29757 -39.88455 -38.70585 -36.27122 -34.12984 -33.23628 -31.47805 -30.98672 -29.85081 -28.13124 -25.53287 -24.34980 -23.75278 -22.81224 -21.76611 -20.37419 -19.54817 -18.55535 -18.32810 -17.64590 -17.29065 -16.89715 -16.69106 -16.51036 -16.04620 -15.83700 -15.45482 -15.12342 -14.77368 -14.49624 -14.27552 -14.09385 -13.86482 -13.56763 -13.34536 -13.14207 -13.10401 -12.76581 -12.50642 -12.44899 -12.39859 -11.99512 -11.88359 -11.82746 -11.31782 -11.11236 -10.94437 -9.93626 -9.78901 -9.62531 -9.17864 -8.40832 -5.36943 0.15718 0.25516 1.50302 1.59702 1.69801 1.84759 1.86501 2.64745 2.72048 3.31335 3.34873 3.44736 3.53369 3.60311 3.73340 3.81707 3.96729 4.05587 4.14146 4.24166 4.30548 4.37222 4.39021 4.44708 4.52062 4.58709 4.75026 4.88751 4.93029 5.07288 5.10375 5.16690 5.19932 5.34225 5.36117 5.45685 5.59241 5.94888 6.43102 6.46276 7.01188 7.04168 7.92429 8.05467 9.10491 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.038632 B = 0.002870 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.607425 B = 9754.828279 C = 9906.255164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.106 4.106 3 Si 1.129 2.871 4 H -0.297 1.297 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.329 4.329 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.169 3.831 11 H 0.066 0.934 12 C -0.143 4.143 13 C 0.104 3.896 14 N -0.614 5.614 15 C 0.522 3.478 16 O -0.586 6.586 17 C -0.088 4.088 18 C -0.120 4.120 19 C -0.090 4.090 20 C -0.130 4.130 21 C -0.091 4.091 22 C -0.166 4.166 23 C 0.081 3.919 24 F -0.154 7.154 25 C 0.110 3.890 26 H 0.242 0.758 27 H 0.358 0.642 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.121 0.879 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.146 0.854 38 H 0.056 0.944 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 -25.227 -6.954 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.296 4.296 3 Si 0.954 3.046 4 H -0.223 1.223 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.460 4.460 8 H 0.093 0.907 9 N -0.386 5.386 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.184 4.184 13 C -0.017 4.017 14 N -0.348 5.348 15 C 0.313 3.687 16 O -0.466 6.466 17 C -0.127 4.127 18 C -0.121 4.121 19 C -0.108 4.108 20 C -0.148 4.148 21 C -0.109 4.109 22 C -0.185 4.185 23 C 0.062 3.938 24 F -0.132 7.132 25 C -0.014 4.014 26 H 0.053 0.947 27 H 0.190 0.810 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.158 0.842 33 H 0.139 0.861 34 H 0.168 0.832 35 H 0.176 0.824 36 H 0.180 0.820 37 H 0.164 0.836 38 H 0.074 0.926 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.579 -23.727 -6.468 24.852 hybrid contribution -0.237 -1.219 0.660 1.406 sum 3.342 -24.946 -5.808 25.830 Atomic orbital electron populations 1.71001 1.07394 1.27832 1.56237 1.27269 0.97036 1.04876 1.00461 0.82612 0.73333 0.71372 0.77304 1.22299 1.20397 1.19863 1.20374 0.92563 0.86438 1.46626 0.90714 1.42567 1.04537 1.01600 1.89851 1.21322 0.93533 0.83510 0.95655 0.91638 1.23332 1.02587 0.94371 0.98084 1.22609 0.90734 0.95021 0.93382 1.48564 1.39534 1.09982 1.36681 1.20913 0.80631 0.82665 0.84534 1.90692 1.33912 1.82637 1.39354 1.20616 1.01990 0.89018 1.01082 1.19588 0.99335 0.96330 0.96828 1.21279 0.92651 0.97518 0.99372 1.21599 1.00512 0.94471 0.98191 1.21422 0.95236 1.00416 0.93820 1.21418 0.97378 0.96908 1.02755 1.17955 0.86966 0.97086 0.91823 1.91441 1.53948 1.92972 1.74882 1.21937 0.98951 0.85958 0.94565 0.94725 0.80981 0.92414 0.89212 0.87254 0.88854 0.84201 0.86066 0.83210 0.82361 0.82025 0.83605 0.92587 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.54 13.70 21.65 0.30 -61.24 16 2 C -0.11 -6.07 5.50 84.86 0.47 -5.60 16 3 Si 1.13 51.13 29.92 68.60 2.05 53.18 16 4 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.33 -18.03 9.98 84.03 0.84 -17.19 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -37.19 5.25 -317.34 -1.67 -38.85 16 10 C 0.17 6.54 3.59 46.18 0.17 6.70 16 11 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 12 C -0.14 -4.35 6.77 31.99 0.22 -4.14 16 13 C 0.10 2.31 6.69 86.85 0.58 2.89 16 14 N -0.61 -18.46 3.33 -811.80 -2.70 -21.16 16 15 C 0.52 16.08 7.84 87.66 0.69 16.77 16 16 O -0.59 -23.61 16.28 -3.02 -0.05 -23.66 16 17 C -0.09 -1.79 4.57 29.10 0.13 -1.66 16 18 C -0.12 -2.69 4.43 -19.82 -0.09 -2.77 16 19 C -0.09 -1.61 9.67 22.26 0.22 -1.39 16 20 C -0.13 -1.89 10.04 22.27 0.22 -1.66 16 21 C -0.09 -1.34 10.04 22.26 0.22 -1.12 16 22 C -0.17 -3.24 10.03 22.31 0.22 -3.01 16 23 C 0.08 2.00 7.14 22.38 0.16 2.16 16 24 F -0.15 -4.32 16.66 44.97 0.75 -3.57 16 25 C 0.11 4.10 6.62 86.73 0.57 4.67 16 26 H 0.24 15.34 6.77 -92.71 -0.63 14.71 16 27 H 0.36 19.21 6.34 -92.71 -0.59 18.62 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.11 1.67 7.48 -2.39 -0.02 1.65 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.14 1.87 7.71 -2.39 -0.02 1.85 16 33 H 0.12 2.06 7.94 -2.39 -0.02 2.04 16 34 H 0.15 1.98 8.04 -2.91 -0.02 1.96 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.04 1.81 7.69 -2.39 -0.02 1.79 16 Total: -1.00 -77.25 333.99 3.92 -73.33 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.62 Total: 27.33 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 4.62 Total: -5.36 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -4.07 Total: -121.25 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.05 Total: -23.66 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.75 Total: -3.57 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Total: -77.25 3.92 -73.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970621798.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.415 kcal (2) G-P(sol) polarization free energy of solvation -77.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds