Wall clock time and date at job start Tue Mar 31 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48508 * 109.47011 * 270.00108 * 3 2 1 5 5 H 1.48501 * 109.47025 * 30.00085 * 3 2 1 6 6 H 1.48501 * 109.47314 * 150.00418 * 3 2 1 7 7 C 1.38814 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00176 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99585 * 359.97438 * 7 2 1 10 10 C 1.49296 * 127.10574 * 0.02562 * 9 7 2 11 11 C 1.56233 * 106.50740 * 188.65761 * 10 9 7 12 12 C 1.52130 * 100.81289 * 23.44898 * 11 10 9 13 13 N 1.46500 * 111.09018 * 73.95455 * 12 11 10 14 14 C 1.34777 * 119.99414 * 71.69622 * 13 12 11 15 15 O 1.21500 * 120.00421 * 0.02562 * 14 13 12 16 16 C 1.48280 * 119.99652 * 179.97438 * 14 13 12 17 17 C 1.47494 * 128.71200 * 179.69483 * 16 14 13 18 18 N 1.30648 * 102.71758 * 179.91094 * 17 16 14 19 19 O 1.20846 * 109.61588 * 0.37373 * 18 17 16 20 20 N 1.20903 * 115.90842 * 359.73551 * 19 18 17 21 21 C 1.51370 * 122.13637 * 208.74291 * 12 11 10 22 22 C 1.55699 * 104.53434 * 141.24327 * 21 12 11 23 23 C 1.56276 * 105.99651 * 352.81222 * 22 21 12 24 24 C 1.42707 * 127.10091 * 180.02562 * 9 7 2 25 25 H 1.08998 * 107.79492 * 256.39823 * 24 9 7 26 26 H 0.97006 * 120.00196 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.04878 * 69.39508 * 10 9 7 28 28 H 1.08997 * 110.04231 * 307.91959 * 10 9 7 29 29 H 1.08994 * 111.14960 * 265.55692 * 11 10 9 30 30 H 1.09003 * 111.14213 * 141.33310 * 11 10 9 31 31 H 0.96998 * 120.00361 * 251.70701 * 13 12 11 32 32 H 1.07994 * 128.63677 * 0.05056 * 17 16 14 33 33 H 1.09002 * 110.41935 * 22.49967 * 21 12 11 34 34 H 1.09003 * 110.46981 * 260.01342 * 21 12 11 35 35 H 1.09002 * 110.16021 * 233.65869 * 22 21 12 36 36 H 1.08995 * 110.15555 * 111.96513 * 22 21 12 37 37 H 1.09004 * 110.97489 * 93.82210 * 23 22 21 38 38 H 1.09002 * 110.97170 * 217.58946 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1560 -2.5727 -0.0005 11 6 -0.4133 -4.0971 0.2249 12 6 0.8805 -4.5063 0.9126 13 7 0.9156 -4.0285 2.2971 14 6 0.1240 -4.5987 3.2269 15 8 -0.6184 -5.5092 2.9171 16 6 0.1599 -4.1155 4.6283 17 6 -0.6188 -4.5895 5.7878 18 7 -0.1904 -3.8227 6.7549 19 8 0.6377 -3.0539 6.3265 20 7 0.8903 -3.1521 5.1483 21 6 1.4467 -5.9053 0.7962 22 6 2.9857 -5.6961 0.6866 23 6 3.2027 -4.1537 0.5604 24 6 1.8808 -3.7027 -0.0005 25 1 1.7856 -4.1045 -1.0093 26 1 -0.4851 0.8401 -0.0004 27 1 -0.5713 -2.2613 -0.9590 28 1 -0.6045 -1.9944 0.8072 29 1 -0.5369 -4.6196 -0.7236 30 1 -1.2727 -4.2587 0.8757 31 1 1.5085 -3.3017 2.5445 32 1 -1.3575 -5.3763 5.8277 33 1 1.0652 -6.3966 -0.0989 34 1 1.2047 -6.4896 1.6840 35 1 3.3717 -6.2034 -0.1976 36 1 3.4806 -6.0731 1.5815 37 1 3.3859 -3.7043 1.5365 38 1 4.0163 -3.9293 -0.1295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992368399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:31 Heat of formation + Delta-G solvation = 125.238382 kcal Electronic energy + Delta-G solvation = -24488.976454 eV Core-core repulsion = 20952.284983 eV Total energy + Delta-G solvation = -3536.691471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.90078 -40.62906 -38.32252 -34.79636 -34.52098 -34.43025 -33.15392 -31.76364 -29.99468 -27.03092 -26.52870 -25.40836 -24.15077 -23.97241 -21.35760 -20.56600 -19.73864 -19.02314 -18.89923 -18.45114 -17.46077 -16.54944 -15.88715 -15.09777 -15.05472 -14.68349 -14.49369 -14.12568 -13.96900 -13.63998 -12.81911 -12.69906 -12.41429 -12.03678 -11.89560 -11.52350 -11.50191 -11.34599 -11.06452 -10.99142 -10.90752 -10.74272 -10.63219 -10.37278 -10.13414 -10.11536 -9.96737 -9.76331 -9.36500 -8.74799 -8.71320 -6.94487 -5.80634 -3.16005 0.83206 1.30180 2.82271 3.14858 3.35597 3.41171 3.42898 3.44236 3.54620 4.05370 4.38686 4.52260 4.78039 4.94531 5.13015 5.16926 5.29766 5.41605 5.51242 5.62360 5.70578 5.83253 5.89218 6.04763 6.12660 6.19344 6.27860 6.31745 6.40099 6.52969 6.71405 6.78551 6.95090 7.42815 7.52166 7.69295 7.71028 8.12253 8.26055 8.41956 9.06618 9.73307 10.40566 11.31511 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.006616 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.980202 B = 4231.379402 C = 5395.049546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.585 5.585 10 C 0.176 3.824 11 C -0.139 4.139 12 C 0.127 3.873 13 N -0.664 5.664 14 C 0.601 3.399 15 O -0.525 6.525 16 C -0.037 4.037 17 C 0.034 3.966 18 N -0.360 5.360 19 O 0.338 5.662 20 N -0.314 5.314 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.117 4.117 24 C 0.161 3.839 25 H 0.027 0.973 26 H 0.253 0.747 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.412 0.588 32 H 0.225 0.775 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -10.999 6.774 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.199 4.199 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.308 5.308 10 C 0.053 3.947 11 C -0.178 4.178 12 C 0.040 3.960 13 N -0.315 5.315 14 C 0.383 3.617 15 O -0.400 6.400 16 C -0.203 4.203 17 C -0.152 4.152 18 N -0.084 5.084 19 O 0.113 5.887 20 N -0.034 5.034 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.155 4.155 24 C 0.050 3.950 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.249 0.751 32 H 0.242 0.758 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.618 -10.537 7.142 12.832 hybrid contribution 0.135 0.693 -0.409 0.816 sum 1.754 -9.844 6.734 12.055 Atomic orbital electron populations 1.69907 1.04949 1.25273 1.56309 1.24800 0.95635 0.97730 1.01783 0.86154 0.78677 0.83531 0.77591 1.21569 1.21690 1.20592 1.19004 0.90301 0.82163 1.44696 0.90209 1.43699 1.01675 0.99269 1.86148 1.22041 0.83272 0.88453 1.00972 1.22823 0.96017 0.99680 0.99317 1.21734 0.99369 0.94479 0.80455 1.45611 1.40890 1.36711 1.08254 1.16469 0.81429 0.82746 0.81073 1.90787 1.40026 1.29435 1.79777 1.26484 0.97960 0.96383 0.99441 1.27691 1.01210 1.00987 0.85323 1.75033 1.04991 1.03929 1.24493 1.85093 1.41722 1.43997 1.17932 1.75482 1.18461 1.15750 0.93723 1.21912 0.94999 0.95665 1.02468 1.22830 0.95615 0.95946 1.01175 1.21866 0.97931 0.94487 1.01237 1.20863 0.91439 0.87383 0.95270 0.95599 0.93621 0.94404 0.91714 0.91166 0.91314 0.75113 0.75805 0.90664 0.91186 0.91720 0.92217 0.91638 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.04 10.55 55.49 0.59 -25.46 16 2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.16 16 3 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.09 10.29 -15.06 -0.15 -6.25 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.58 -13.76 3.12 -162.68 -0.51 -14.27 16 10 C 0.18 4.10 5.33 -0.75 0.00 4.10 16 11 C -0.14 -2.63 6.20 -25.44 -0.16 -2.79 16 12 C 0.13 2.21 0.40 -130.64 -0.05 2.16 16 13 N -0.66 -11.56 4.39 -47.31 -0.21 -11.77 16 14 C 0.60 10.00 7.17 -12.13 -0.09 9.91 16 15 O -0.52 -9.35 15.20 5.37 0.08 -9.27 16 16 C -0.04 -0.54 7.56 -80.07 -0.61 -1.14 16 17 C 0.03 0.40 12.63 -14.28 -0.18 0.22 16 18 N -0.36 -4.54 12.22 30.72 0.38 -4.16 16 19 O 0.34 4.57 11.65 27.26 0.32 4.89 16 20 N -0.31 -4.73 12.13 33.50 0.41 -4.32 16 21 C -0.11 -1.64 6.06 -26.12 -0.16 -1.80 16 22 C -0.12 -1.56 6.93 -23.53 -0.16 -1.73 16 23 C -0.12 -1.87 6.47 -26.21 -0.17 -2.04 16 24 C 0.16 3.08 2.61 -68.72 -0.18 2.90 16 25 H 0.03 0.52 7.98 -51.93 -0.41 0.11 16 26 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.04 0.96 7.98 -51.93 -0.41 0.55 16 28 H 0.06 1.70 7.05 -51.93 -0.37 1.33 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.32 7.17 -51.93 -0.37 0.95 16 31 H 0.41 7.58 7.66 -40.82 -0.31 7.27 16 32 H 0.23 1.85 8.06 -52.49 -0.42 1.42 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.06 6.86 -51.93 -0.36 0.70 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.08 7.38 -51.93 -0.38 0.70 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -28.90 314.26 -5.95 -34.85 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.70 Total: 4.93 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.01 Total: 3.37 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.65 Total: -59.98 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: 0.40 Total: -4.38 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.90 -5.95 -34.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992368399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.088 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds